View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9045_high_3 (Length: 391)
Name: NF9045_high_3
Description: NF9045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9045_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 47372917 - 47373275
Alignment:
| Q |
18 |
cattttgtatttctccaccaatcatttcattttcagaaaattcatcttcattttgtagttgttcgttttcatctatgacatcgtcagcatcaacttcacc |
117 |
Q |
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| T |
47372917 |
cattttgtatttctccaccaatcatttcattttcagaaaattcatcttcattttgtagttgttcgttttcatc---------gtcagcatcaacttcacc |
47373007 |
T |
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| Q |
118 |
atcttcttcttgttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacggccatggcttctatcagcttgaaagcaagaa |
217 |
Q |
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| T |
47373008 |
atcttcttcttgttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacagccatggcttctatcagcttgaaagcaagaa |
47373107 |
T |
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| Q |
218 |
gtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaagagattctgatcctcttatggttgtcaaaggtg |
317 |
Q |
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| T |
47373108 |
gtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaaaagattctgatcctcttatggttgtcaaaggtg |
47373207 |
T |
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| Q |
318 |
gtggaaaattctgagttttcactttcttagtagctgctaaaacttgagaacaaggttgtctctgctcc |
385 |
Q |
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| T |
47373208 |
gtggaaaattctgagttttcactttcttagtagctgctaaaacttgagaacaaggttgtctttgctcc |
47373275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 33 - 388
Target Start/End: Complemental strand, 47386006 - 47385654
Alignment:
| Q |
33 |
caccaatcatttcattttcagaaaattcatcttc---attttgtagttgttcgttttcatctatgacatcgtcagcatcaacttcaccatcttcttcttg |
129 |
Q |
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| T |
47386006 |
caccaaccatttcattttcatataattcttcttctttattatgtggtttttcattttcatctatgacatcatcatcatcaacatcaacatcctcttcttg |
47385907 |
T |
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| Q |
130 |
ttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacggccatggcttctatcagcttgaaagcaagaagtacttggtggg |
229 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||||||| |
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| T |
47385906 |
ttc------cgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgatgtacttggtggg |
47385813 |
T |
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| Q |
230 |
accttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaagagattctgatcctcttatggttgtcaaaggtggtggaaaattct |
329 |
Q |
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| T |
47385812 |
acctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattat |
47385713 |
T |
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| Q |
330 |
gagttttcactttcttagtagctgctaaaacttgagaacaaggttgtctctgctcctcc |
388 |
Q |
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| T |
47385712 |
ggatttttggtttcttagtagctattaatactggactacaaggttctctttgctcctcc |
47385654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
196 |
tctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacg |
267 |
Q |
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||||||||||||||| || || ||||||||||||||||| | |||||||| |||||||||||||| |||| |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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