View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9045_low_1 (Length: 620)
Name: NF9045_low_1
Description: NF9045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9045_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 19 - 615
Target Start/End: Original strand, 35978529 - 35979129
Alignment:
| Q |
19 |
aggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttggagctgccaaaccacaaaagtgtccagttccatcacaatttcttgatatttta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35978529 |
aggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttggagctgccaaaccacaaaagtgtccagttccatcacaatttcctgatatttta |
35978628 |
T |
|
| Q |
119 |
agtggaaaacaatttctttcactttattcactaatgtgtttttaaatcttagataattttgctactattcttcttcaagatatccctttannnnnnnnnn |
218 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35978629 |
agtggtaaacaatttcttttactttattcactaatgtgtttttaaatcttagataattttgctactattcttcttcaagatatccctttatttttccttt |
35978728 |
T |
|
| Q |
219 |
nnnngtatttcaaaatctatctaacaactttaatcaactcattcttccagatacggatcgtttgaataaacttcagcatcaaaactacgctcctaagaac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
35978729 |
ttttgtatttcaaaatctatctaacaactttaatcaactcattcttccagatacggatcgtttgaataaacttcagcatcaaaactacgcaagtaagaac |
35978828 |
T |
|
| Q |
319 |
aatcttgattcacctgtttttacaattgaagctgaggggccacctcatgacattcgctataaggctacagttgttgttgatgggaaatcgtttaaaagcc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
35978829 |
aatcttgattcacctgtttttacaattgaagctgaggggccacctcgtgacattcgctataatgctacagttgttgttgatgggaaatcgtttaaaagcc |
35978928 |
T |
|
| Q |
419 |
ctacatctttcgatactagaaaagaggcagagcaggctgctctacaaattgttgacatgtttcaggcaagatcagcccttgtaatttttcttgtgattct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35978929 |
ctacatctttcgatactagaaaagaggcagagcaggctgctctacaaattgttgacatgtttcaggcaagatcagcccttgtaatttttcttgtgattct |
35979028 |
T |
|
| Q |
519 |
aacttgac----ttttatttttggatattttatgatcataaatccataaccagatgttggagttggaggttacatatcaaaatagaacttaatctctttg |
614 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35979029 |
aacttgacttttttttttttttggatattttatgatcataaatccataaccagatgttggagttggaggttacatatcaaaatagaacttaatctctttg |
35979128 |
T |
|
| Q |
615 |
a |
615 |
Q |
| |
|
| |
|
|
| T |
35979129 |
a |
35979129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 19 - 454
Target Start/End: Original strand, 35968456 - 35968886
Alignment:
| Q |
19 |
aggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttggagctgccaaaccacaaaagtgtccagttccatcacaatttcttgatatttta |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||| | ||| |||||||||||| ||||||||||| ||||||| ||||||||||||| |||||| ||||| || |
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|
| T |
35968456 |
aggctcttcaataccaacaaatgaatatagttcagaagagaaagttgatgctgccaaacctcaaaagtatccagttccatcagaatttccacatattata |
35968555 |
T |
|
| Q |
119 |
agtggaaaacaatttctttcactttattcactaatgtgtttttaaatcttagataattttgctactattcttcttcaagatatccctttannnnnnnnnn |
218 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||| ||| ||||||| |||||||| | |||||||||||||||||||||| |||| |
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|
| T |
35968556 |
agtggtaaaca-tttctttcactttagtcactaatgtttttgcaaatcttcgataatttggttactattcttcttcaagatatcactttttttatccttt |
35968654 |
T |
|
| Q |
219 |
nnnngtatttcaaaatctatctaacaactttaatcaactcattcttccagatacggatcgtttgaataaacttcagcatcaaaactacgctcctaagaac |
318 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| || ||| |
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|
| T |
35968655 |
c----tatttcaacatctatctaacaacgttaatcaactcattcttccagatacggattgtttgagcaaacttcagcatcaaaactatgctcaaaataac |
35968750 |
T |
|
| Q |
319 |
aatcttgattcacctgtttttacaattgaagctgaggggccacctcatgacattcgctataaggctacagttgttgttgatgggaaatcgtttaaaagcc |
418 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| ||||||||| |||||||| ||| |||||||||| |||||| |||||| |||||| || |||||| |
|
|
| T |
35968751 |
aatcttgattcacctgttttgacaactgaagccgaggggccatctcatgacgttcattataaggctagtgttgttattgatgcgaaatcattcgaaagcc |
35968850 |
T |
|
| Q |
419 |
ctacatctttcgatactagaaaagaggcagagcagg |
454 |
Q |
| |
|
||| || |||| | |||| |||||||| |||||||| |
|
|
| T |
35968851 |
ctatatttttcaacactaaaaaagaggaagagcagg |
35968886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 295 - 483
Target Start/End: Original strand, 35956121 - 35956309
Alignment:
| Q |
295 |
catcaaaactacgctcctaagaacaatcttgattcacctgtttttacaattgaagctgaggggccacctcatgacattcgctataaggctacagttgttg |
394 |
Q |
| |
|
|||||||||| |||| |||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
35956121 |
catcaaaactgtgctcgaaagaacgatcttgatcaacctgtttttacaattaaaactgaggggccacctcatgacattcgctataaagctattgttgtta |
35956220 |
T |
|
| Q |
395 |
ttgatgggaaatcgtttaaaagccctacatctttcgatactagaaaagaggcagagcaggctgctctacaaattgttgacatgtttcag |
483 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||||| | |||| |||||||||||||||||||||| | || |||||| |||||||||| |
|
|
| T |
35956221 |
ttgatgggaaatcatttgaaagcccaacatctttcaacactataaaagaggcagagcaggctgctgcaaaatttgttggcatgtttcag |
35956309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 236 - 456
Target Start/End: Original strand, 35971622 - 35971842
Alignment:
| Q |
236 |
tatctaacaactttaatcaactcattcttccagatacggatcgtttgaataaacttcagcatcaaaactacgctcctaagaacaatcttgattcacctgt |
335 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||| ||| |||| |||||||| |||| || |||||||||||| ||||||| |
|
|
| T |
35971622 |
tatctaacaacaataatcaacacattcttccagatatggatcgtttgagcaaaaaacagctacaaaactatgctcgaaaaaacaatcttgatccacctgt |
35971721 |
T |
|
| Q |
336 |
ttttacaattgaagctgaggggccacctcatgacattcgctataaggctacagttgttgttgatgggaaatcgtttaaaagccctacatctttcgatact |
435 |
Q |
| |
|
||||||| || || ||||||||| |||||||||| |||| ||||| |||| |||||| ||||||| ||||| ||| ||||||| |||| ||| ||||| |
|
|
| T |
35971722 |
ttttacatttaaaactgaggggctacctcatgactttcgttataaagctattgttgttattgatggaaaatcatttgaaagcccaacatttttaaatact |
35971821 |
T |
|
| Q |
436 |
agaaaagaggcagagcaggct |
456 |
Q |
| |
|
| | ||||||||||||||||| |
|
|
| T |
35971822 |
atagaagaggcagagcaggct |
35971842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 35951357 - 35951497
Alignment:
| Q |
19 |
aggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttggagctgccaaaccacaaaagtgtccagttccatcacaatttcttgatatttta |
118 |
Q |
| |
|
||||| |||||| |||||| |||||||||| |||||||||||||||| |||| ||||||| ||| || ||||| |||| |||||| || | |||| | |
|
|
| T |
35951357 |
aggcttttcaataccaacagatgaatatggttcaaaagagaaagttgaagctaccaaacctcaagagagtccacttcctgcacaatctccggttattaga |
35951456 |
T |
|
| Q |
119 |
agtggaaaacaatttctttcactttattcactaatgtgttt |
159 |
Q |
| |
|
| ||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
35951457 |
actggtaaacaacttctttcactttattcactaatgtgttt |
35951497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 236 - 459
Target Start/End: Original strand, 35951561 - 35951772
Alignment:
| Q |
236 |
tatctaacaactttaatcaactcattcttccagatacggatcgtttgaataaacttcagcatcaaaactacgctcctaagaacaatcttgattcacctgt |
335 |
Q |
| |
|
|||||||||| ||||||||| | ||||||||||||| ||||||||| ||| || | ||||| || |||| ||||||||||||||| ||||||| |
|
|
| T |
35951561 |
tatctaacaagaataatcaacttactcttccagatacgaatcgtttgagcaaaaaacatctgcaaaattatgctcgaaagaacaatcttgatccacctgt |
35951660 |
T |
|
| Q |
336 |
ttttacaattgaagctgaggggccacctcatgacattcgctataaggctacagttgttgttgatgggaaatcgtttaaaagccctacatctttcgatact |
435 |
Q |
| |
|
||||||||| || ||||| ||| ||| |||||| ||||| |||||| |||||| |||||| ||| |||||||||||| |||| | || |
|
|
| T |
35951661 |
ttttacaatcaaaactgagaggc------------ttcactataaagctactgttgttattgatgagaaatcatttgaaagccctacatttttcaactct |
35951748 |
T |
|
| Q |
436 |
agaaaagaggcagagcaggctgct |
459 |
Q |
| |
|
| |||||||||||| ||||||||| |
|
|
| T |
35951749 |
ataaaagaggcagaacaggctgct |
35951772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 35971524 - 35971558
Alignment:
| Q |
125 |
aaacaatttctttcactttattcactaatgtgttt |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35971524 |
aaacaatttctttcactttattcactaatgtgttt |
35971558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 35955873 - 35956034
Alignment:
| Q |
23 |
tcttcaatgccaacaaatgaatatgggtcaaaagagaaagttggagctgccaaaccacaaaagtgtccagttccatcacaatttcttgatattttaagtg |
122 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||| ||||| ||||| |||||| || || ||||||||| | ||||| || | |||| ||||| |
|
|
| T |
35955873 |
tcttcaaaaccaacaaatgagcatggttcaaaagaggaagttaaagctgtcaaacctcaggagagtccagttctacaacaatctccagttattaaaagtg |
35955972 |
T |
|
| Q |
123 |
gaaaacaatttctttcactttattcactaatgtgtttttaaatcttagataattttgctact |
184 |
Q |
| |
|
| |||||||||||||| |||| | |||||| ||||| ||||||| |||| ||||||||| |
|
|
| T |
35955973 |
gtaaacaatttctttccctttgcttactaatatgtttgcaaatctttgatacgtttgctact |
35956034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 35956080 - 35956121
Alignment:
| Q |
236 |
tatctaacaactttaatcaactcattcttccagatacggatc |
277 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
35956080 |
tatctaacaacaataatcaactcattctttcagatacggatc |
35956121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 35958424 - 35958493
Alignment:
| Q |
236 |
tatctaacaactttaatcaactcattcttccagatacggatcgtttgaataaacttcagcatcaaaacta |
305 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||| | ||| |||||| ||||||||||| || ||||| |
|
|
| T |
35958424 |
tatctaacaacaataatcaacacattcttccaaataagaatcatttgaacaaacttcagcagcataacta |
35958493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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