View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9045_low_14 (Length: 321)
Name: NF9045_low_14
Description: NF9045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9045_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 8103395 - 8103693
Alignment:
| Q |
9 |
tggtgttgtcttcatggtctgttatttctaaacggcctgcaagtagtgggaaaaaggcaagagtagatgatagagattgttttagctgtcgaatttggtt |
108 |
Q |
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| T |
8103395 |
tggtgttgtcttcatggtctgttatttctagacggcctgcaagtagtgggaaaaaagcaagagtagatgatagagattgttttagctgtggaatttggtt |
8103494 |
T |
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| Q |
109 |
tgactcaagaggatggtggtaaaggagacccttatgggtgggttcaacaagtataaccttgagatcccatggagtaagatcaaatttttcatcagttgaa |
208 |
Q |
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| T |
8103495 |
tgactctagaggatggtggtaaaggagacccttatgggtgggttcaacaagtagaaccttgagatcccatggagtaagatcaattttttcatcagttgaa |
8103594 |
T |
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| Q |
209 |
tttggtgcctttattgtatctgtagagaggactcggatggcagccatgtattcattgcagccttagtcgatgcttagacatatctttatatacagaagc |
307 |
Q |
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| T |
8103595 |
tttggtgcctttattgtatctgtagagaggactcggatggcagccatgttttcattgcagccttagtcgatgcttagacatatctttatatacagaagc |
8103693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 260
Target Start/End: Complemental strand, 40146572 - 40146338
Alignment:
| Q |
26 |
tctgttatttctaaacggcctgcaagtagtgggaaaaaggcaagagtagatgatagagattgttttagctgtcgaatttggtttgactcaagaggatggt |
125 |
Q |
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| T |
40146572 |
tctgttatttctagacggcctgcaagtggtgggaaaaaggcaagggtagaagatagagagtgtttcagatgttgaatttggtttggcactagaggatggt |
40146473 |
T |
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| Q |
126 |
ggtaaaggagacccttatgggtgggttcaacaagtataaccttgagatcccatggagtaagatcaaatttttcatcagttgaatttggtgcctttattgt |
225 |
Q |
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| T |
40146472 |
gataaagaagaccctttttggtgggtgcaattagtaggtaccggagatcccatggagttaaatcaattttttgatcacttgaatttggtgacttgattgt |
40146373 |
T |
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| Q |
226 |
atctgtagagaggactcggatggcagccatgtatt |
260 |
Q |
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| T |
40146372 |
atgggtagagaggacttggaatgcagccatgtatt |
40146338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 40409580 - 40409341
Alignment:
| Q |
9 |
tggtgttgtcttcatggtctgttatttctaaacggcctgcaagtagtgggaaaaaggcaagagtagatgatagagattgttttagctgtcgaatttggtt |
108 |
Q |
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| T |
40409580 |
tggtgttgtctttatggtctgttctctctagacggcctgcaagtggtgggaaaaaggcaagggcagaggatagagagtgtttcagatgttgaatttggtt |
40409481 |
T |
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| Q |
109 |
tgactcaagaggatggtggtaaaggagacccttatgggtgggttcaacaagtataaccttgagatcccatggagtaagatcaaatttttcatcagttgaa |
208 |
Q |
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| T |
40409480 |
tggcactagaggatggtgatgaagaaga--ctttttggtgcgtgcaactagtaggaactggagatcccatggagtcaaatgattattttgatttgttgaa |
40409383 |
T |
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| Q |
209 |
tttggtgcctttattgtatctgtagagaggactcggatggca |
250 |
Q |
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| T |
40409382 |
tttggtgcctttattgtatcggtagagagaacttggatggca |
40409341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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