View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9045_low_17 (Length: 278)
Name: NF9045_low_17
Description: NF9045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9045_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 24147229 - 24146971
Alignment:
| Q |
1 |
tggcaactagcacaagacaacgccactagctagaaggtgagcaacattgtttgtttgtctccgaagaaaacttatctgaaagtttggtaaagaatataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
24147229 |
tggcaactagcacaagacaacgccactagctagaaggtgagcaacattgtttgtttgtctccgaagaaaacttatccgtaagtttggtaaagaatataaa |
24147130 |
T |
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| Q |
101 |
aatgttttgcaagcacataaaatactaccccactctgttgtatgacttggtctccccgccatgccgtccacgagtagtttggaatctagttcaataaaca |
200 |
Q |
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| T |
24147129 |
aatgttttgcaagcacataaaatactaccccactttgttgtatgacttggtct-cccgccatgccgtccacgagtagtttggaatctagttcaataaaca |
24147031 |
T |
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| Q |
201 |
ctttgcagaagcctaaattcataagaacacagtagagcttgctttagaccccatgcttcc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24147030 |
ctttgcagaagcctaaattcataagaacacagtagagcttgctttagaccccatgcttcc |
24146971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 24152668 - 24152413
Alignment:
| Q |
1 |
tggcaactagcacaagacaacgccactagctagaaggtgagcaacattgtttgtttgtctccgaagaaaacttatctgaaagtttggtaaagaatataaa |
100 |
Q |
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|||||||||||| ||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24152668 |
tggcaactagcataagacaatgcgactagctagaaggtgaacaatattgtttgtttgtctccgaagaaaacttatccgaaagtttggtaaagaatataaa |
24152569 |
T |
|
| Q |
101 |
aatgttttgcaagcacataaaatactaccccactctgttgtatgacttggtctccccgccatgccgtccacgagtagtttggaatctagttcaataaaca |
200 |
Q |
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| T |
24152568 |
aatgttttgcaagcacataaaatactaccccactatgttgtatgacttggtct-cccgccatgccgtccacgagtagtttggaatctagttcaataaaca |
24152470 |
T |
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| Q |
201 |
ctttgcagaagcctaaattcataagaacacagtagagcttgctttagaccccatgcttcc |
260 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
24152469 |
ctttgcagaagcctaaattcataagaacac---agagcttgctttagaccctatgcttcc |
24152413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 251
Target Start/End: Original strand, 44006577 - 44006786
Alignment:
| Q |
40 |
agcaacattgtttgtttgtctccgaagaaaacttatctgaaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactctgtt |
139 |
Q |
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|||||||||||| ||||||||||||| ||||| | || |||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| ||||||| |
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| T |
44006577 |
agcaacattgttggtttgtctccgaataaaacctctccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatccc-ctctgtt |
44006675 |
T |
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| Q |
140 |
gtatgacttggtctccccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataagaacacagtagagct |
239 |
Q |
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||||||| ||||| ||||||||||| || | || ||||||||||||||||||||| || ||||| |||||| || ||||||||| |||| || |||| |
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| T |
44006676 |
ctatgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag-ccacattaaagct |
44006774 |
T |
|
| Q |
240 |
tgctttagaccc |
251 |
Q |
| |
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||||||| |||| |
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| T |
44006775 |
tgctttaaaccc |
44006786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 21330785 - 21330832
Alignment:
| Q |
38 |
tgagcaacattgtttgtttgtctccgaagaaaacttatctgaaagttt |
85 |
Q |
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||||||||||| ||| |||||||||||| ||||||||||| ||||||| |
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| T |
21330785 |
tgagcaacattatttatttgtctccgaataaaacttatcttaaagttt |
21330832 |
T |
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