View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9045_low_18 (Length: 253)
Name: NF9045_low_18
Description: NF9045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9045_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 48 - 253
Target Start/End: Complemental strand, 47908356 - 47908150
Alignment:
| Q |
48 |
cgtgttccttatcaaaaagacaattcactcctctccttctctctctatttgcacacatgtttttctttcatttgataccagaaaggcataaactgttcca |
147 |
Q |
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| T |
47908356 |
cgtgttccttatcaaaaagacaattcactcctctccttctctctctatttgcacacatgtttttctttcatttgataccagaaaggcataaactgttcca |
47908257 |
T |
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| Q |
148 |
aaca-aaaacacttatgaaaataaaatcatttcttcaccgttaattaattcattcttannnnnnngctttatcgccgcatagccacagatatagcttaac |
246 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47908256 |
aacaaaaaacacttatgaaaataaaatcatttcttcaccgttaattaattaattcttatttttttgctttatcgccgcatagccacagatatagcttaac |
47908157 |
T |
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| Q |
247 |
ccttcca |
253 |
Q |
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| T |
47908156 |
ccttcca |
47908150 |
T |
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