View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9045_low_3 (Length: 600)
Name: NF9045_low_3
Description: NF9045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9045_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Original strand, 1903073 - 1903658
Alignment:
| Q |
1 |
tagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccagatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1903073 |
tagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccatatat |
1903172 |
T |
|
| Q |
101 |
aacactgacactaggacatagacgccaatattaatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaac |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1903173 |
aacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaac |
1903272 |
T |
|
| Q |
201 |
actaatgcctgttgaacactgaacacgccttcaatgtgaagtatcggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1903273 |
actaatgcctgttgaacactgaacacgccttcaatgtgaagta----tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatg |
1903368 |
T |
|
| Q |
301 |
aaatattttttca-------ttatttaatgagatcatcaaaattttagtactgaaaagtttaagttcgtttattcatttcacaggtacatatcttgaaag |
393 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1903369 |
aaatattttttcatttcttgttatttaatgagatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcacaggtacatatcttgaaag |
1903468 |
T |
|
| Q |
394 |
agttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttg |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1903469 |
agttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaaagcaagtgcttg |
1903568 |
T |
|
| Q |
494 |
gaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagatagtcagcaaaactatatattttgacatcaaaattgatatc |
583 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1903569 |
gaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagatagtcagcaaaactatatattttgacatcaaaattgatatc |
1903658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Original strand, 1907306 - 1907891
Alignment:
| Q |
1 |
tagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccagatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1907306 |
tagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccatatat |
1907405 |
T |
|
| Q |
101 |
aacactgacactaggacatagacgccaatattaatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaac |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1907406 |
aacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaac |
1907505 |
T |
|
| Q |
201 |
actaatgcctgttgaacactgaacacgccttcaatgtgaagtatcggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1907506 |
actaatgcctgttgaacactgaacacgccttcaatgtgaagta----tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatg |
1907601 |
T |
|
| Q |
301 |
aaatattttttca-------ttatttaatgagatcatcaaaattttagtactgaaaagtttaagttcgtttattcatttcacaggtacatatcttgaaag |
393 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1907602 |
aaatattttttcatttcttgttatttaatgagatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcacaggtacatatcttgaaag |
1907701 |
T |
|
| Q |
394 |
agttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttg |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1907702 |
agttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaaagcaagtgcttg |
1907801 |
T |
|
| Q |
494 |
gaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagatagtcagcaaaactatatattttgacatcaaaattgatatc |
583 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1907802 |
gaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagatagtcagcaaaactatatattttgacatcaaaattgatatc |
1907891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 314 - 557
Target Start/End: Original strand, 1898089 - 1898331
Alignment:
| Q |
314 |
ttatttaatgagatcatcaaaattttagtactgaaaagtttaagttcgtttattcatttcacaggtacatatcttgaaagagttcccagatgaactaact |
413 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1898089 |
ttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcacaggtacatatcatgaaagagttcccagatgaactaact |
1898188 |
T |
|
| Q |
414 |
ataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctct |
513 |
Q |
| |
|
||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1898189 |
ctaaccttgctttacaccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctct |
1898288 |
T |
|
| Q |
514 |
cactcgtctccgttgtttgttcggtaagatagtcagcaaaacta |
557 |
Q |
| |
|
|||| ||||| |||||| ||| |||||||| || ||||||||| |
|
|
| T |
1898289 |
cacttatctccattgtttcttctgtaagatactc-gcaaaacta |
1898331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 366 - 557
Target Start/End: Original strand, 1913516 - 1913707
Alignment:
| Q |
366 |
ttcatttcacaggtacatatcttgaaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctt |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||| | || |||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
1913516 |
ttcatttcacaggtacatatcttgaaagagttcccagatgaactaactttagtcttgatatattccataactgccacaatcatatctacagttgtagctt |
1913615 |
T |
|
| Q |
466 |
tgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagatagtcagcaaaacta |
557 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||| |||||| ||| |||||||| | ||||||||| |
|
|
| T |
1913616 |
tgttatcagttccaaattcaagtgcttggataataggactaaatctctcacttatctccattgtttcttctgtaagatacactgcaaaacta |
1913707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 314 - 544
Target Start/End: Original strand, 1887912 - 1888142
Alignment:
| Q |
314 |
ttatttaatgagatcatcaaaattttagtactgaaaagtttaagttcgtttattcatttcacaggtacatatcttgaaagagttcccagatgaactaact |
413 |
Q |
| |
|
||||||||||||| | | | ||||||||| || || ||||| |||| | ||||||||||| |||||||| | |||||||||||||||||||||| ||| |
|
|
| T |
1887912 |
ttatttaatgagagcttaataattttagttctaaagagttttagtttctatattcatttcataggtacatgttttgaaagagttcccagatgaaccaaca |
1888011 |
T |
|
| Q |
414 |
ataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctct |
513 |
Q |
| |
|
|| | ||| ||||||||| |||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1888012 |
ttagtcttgctttactccattactgccaccatcttatcaacagttgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctct |
1888111 |
T |
|
| Q |
514 |
cactcgtctccgttgtttgttcggtaagata |
544 |
Q |
| |
|
||||| ||||| |||||| ||| |||||||| |
|
|
| T |
1888112 |
cactcatctccattgtttcttccgtaagata |
1888142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 364 - 544
Target Start/End: Original strand, 1892810 - 1892990
Alignment:
| Q |
364 |
tattcatttcacaggtacatatcttgaaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagc |
463 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || ||| ||||| || | ||||| ||| ||| ||||||||||||||||| | ||||||||| |
|
|
| T |
1892810 |
tattcatttcacaggtgcatatcttgaaagagttccctgacgaagtaactttagtcttgttatacaccattactgccaccatcatatcaacagttgtagc |
1892909 |
T |
|
| Q |
464 |
tttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagata |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||| |||||||| |
|
|
| T |
1892910 |
attgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagata |
1892990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 364 - 544
Target Start/End: Original strand, 1880666 - 1880846
Alignment:
| Q |
364 |
tattcatttcacaggtacatatcttgaaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagc |
463 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||| ||||| || | ||||| ||| ||| |||||| ||||||||||| | ||||||||| |
|
|
| T |
1880666 |
tattcatttcacaggtgcatatcttgaaagagttctcagatgaagtaactttagtcttgttatacaccataactgctaccatcatatcaacagttgtagc |
1880765 |
T |
|
| Q |
464 |
tttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagata |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||| ||| |||||||| |
|
|
| T |
1880766 |
attgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctctatagtttcttctgtaagata |
1880846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 1897876 - 1898006
Alignment:
| Q |
142 |
aaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtgaag |
241 |
Q |
| |
|
||||||||| ||||| || ||||| ||||||||||||| ||||||||||||||||| ||| || | ||||| |||||||||||| |||||| ||||| |
|
|
| T |
1897876 |
aaatggaaatgattgaatttaacatgcatgtctatgtccgacaccagcacgtgccagacatcgatacatgttggacactgaacacgttttcaatatgaag |
1897975 |
T |
|
| Q |
242 |
tatcggtcggtgctgcatagtatttactagaatgt |
276 |
Q |
| |
|
|| || ||||| |||||||||||||||||||| |
|
|
| T |
1897976 |
ta----tcagtgctacatagtatttactagaatgt |
1898006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 1897627 - 1897676
Alignment:
| Q |
74 |
attgacacagtcacgaacaccagatataacactgacactaggacatagac |
123 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||| || ||||| |
|
|
| T |
1897627 |
attgacacagtcacgaacaccagacataatactgacactagcacgtagac |
1897676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 1892137 - 1892189
Alignment:
| Q |
4 |
ggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagt |
56 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||| |||| |||| |||| |
|
|
| T |
1892137 |
ggtaggattagtattatgcaaaatgagagacgttatactttaagaattgaagt |
1892189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University