View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9045_low_4 (Length: 544)
Name: NF9045_low_4
Description: NF9045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9045_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 37448143 - 37447846
Alignment:
| Q |
9 |
agaagcagagaagaaacacattgtttggataaacaacttaattaagcgttataagcacc--acatttactacctatgtctctaaaataaaggaccctctt |
106 |
Q |
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| T |
37448143 |
agaatcagaaaagaaacgcattgtttggataaacaacttaattaagcgttataagcacctaacatttactacctatgtctctaaaataaaggaccctctt |
37448044 |
T |
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| Q |
107 |
ctatgtctatatatgagtgatacatacagctcaacaattaacaacatgaacaataaaataaaaaagaattggtgtgatggaacataaacaaatgatataa |
206 |
Q |
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| T |
37448043 |
ctatgtctatatatgagtgatacatacagctcaacaattaaaaacatgaacaataaaataaaaaagaattggtgtgatggaacataaacaaatgatataa |
37447944 |
T |
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| Q |
207 |
tgaataaaatcatcaccttttccaagttggtcatcatgtttgacagtgatgtcattgcagtgccttgaagagaaaatgttttgataatattcctgcat |
304 |
Q |
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| T |
37447943 |
tgaataaaatcatcaccttttccaagttggtcatcatgtttgacagtgatgtcattgcagtgccttgaagagaaaatcttttgataatattcctgcat |
37447846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 380 - 525
Target Start/End: Complemental strand, 37447770 - 37447625
Alignment:
| Q |
380 |
ttggtgaggtgagggaggagagagaagtgtggtaatttcattggcacaacgcgaggtaatacagcaaattggtggttccattgaaacaaaagttggaact |
479 |
Q |
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| T |
37447770 |
ttggtgaggtgagggaggagagagaagtgtggtaatttcattggcacaacgcgaggtaatacaacaaattggtggttccattgaaacaaaagttggaact |
37447671 |
T |
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| Q |
480 |
ttggaagagagtgtcaacgacacaacacaaacgtgacggcgccaat |
525 |
Q |
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| T |
37447670 |
ttggaagagagtgtcaacaacacaacacaaacgtgacggcgccaat |
37447625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 18852891 - 18852923
Alignment:
| Q |
24 |
acacattgtttggataaacaacttaattaagcg |
56 |
Q |
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| T |
18852891 |
acaccttgtttggataaacaacttaattaagcg |
18852923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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