View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9045_low_5 (Length: 492)
Name: NF9045_low_5
Description: NF9045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9045_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 13766181 - 13765748
Alignment:
| Q |
19 |
aaatccgtccggtatagggatctcgttaccatccacactagaaaccaccaattccatttttgaaaccaagactagagctaacaacaggacattatccaaa |
118 |
Q |
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| T |
13766181 |
aaatccgtccggcctagggctctcgttaccatccagactagaaaccaccaattccatttttgaaaccaagaattgagctgacaacagaacattatccaaa |
13766082 |
T |
|
| Q |
119 |
ttagaaatatgaatgaaatcaatatcgaccatggtcggtctataggtctatgggtctgagaaatgatgcgtaaagaaattcacaatcgcttgtttgatct |
218 |
Q |
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| T |
13766081 |
ttagaaatatgaaagaaatcaatatcgcccatggtcggtctataggtctatgggtctgagaaatgatgcgtaaagaaattcacaatcgcttgtttgttct |
13765982 |
T |
|
| Q |
219 |
ttgcaacatcctccatccacctttccaccctaggtgccgagatggaattcctcatacctctattcttcacacaggcgtggaaataagttgtattatgtcc |
318 |
Q |
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| T |
13765981 |
ttgcaacatcatccatccacctttccaccctaggagccgagatggaattcctcatacctctattcttcacacaggcgaggaaataagttgtattatgtcc |
13765882 |
T |
|
| Q |
319 |
ttctctctctcaaccattttgctcttgaccattggaacatctacgagtcttagatcttcaaaatagtccacaaatacgccaaacactggttcttattagc |
418 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||| |||| |||||| ||| ||||||| ||||||||||||||||||| ||| |
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| T |
13765881 |
ttctctctctcaaccactttgctcttgaccattggaacatctgcgagtcttggatcgtcaaaacagtttacaaataggccaaacactggttcttatcagc |
13765782 |
T |
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| Q |
419 |
tacctccaccacaacaagatcccttcccttagcc |
452 |
Q |
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| T |
13765781 |
tacctccacaaaaacaagatccctccccttagcc |
13765748 |
T |
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