View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9045_low_7 (Length: 444)

Name: NF9045_low_7
Description: NF9045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9045_low_7
NF9045_low_7
[»] chr1 (10 HSPs)
chr1 (20-430)||(3851597-3852035)
chr1 (112-213)||(622911-623014)
chr1 (121-212)||(21322539-21322632)
chr1 (204-255)||(43908994-43909045)
chr1 (222-253)||(50899052-50899083)
chr1 (133-180)||(52186916-52186963)
chr1 (201-251)||(622841-622891)
chr1 (190-256)||(9978898-9978964)
chr1 (121-196)||(32827729-32827806)
chr1 (122-178)||(9873756-9873812)
[»] chr5 (4 HSPs)
chr5 (115-256)||(32303607-32303750)
chr5 (117-213)||(37442577-37442674)
chr5 (115-213)||(9828179-9828277)
chr5 (114-211)||(8254696-8254794)
[»] chr8 (11 HSPs)
chr8 (115-197)||(12750154-12750238)
chr8 (115-180)||(22842147-22842212)
chr8 (117-195)||(33102092-33102172)
chr8 (201-256)||(12750274-12750329)
chr8 (168-256)||(5995179-5995270)
chr8 (201-256)||(157473-157528)
chr8 (203-256)||(15020037-15020090)
chr8 (122-177)||(38006564-38006619)
chr8 (201-256)||(44255301-44255356)
chr8 (220-253)||(33102138-33102171)
chr8 (220-256)||(8150094-8150130)
[»] chr2 (7 HSPs)
chr2 (117-256)||(13387318-13387459)
chr2 (185-256)||(39555913-39555984)
chr2 (121-212)||(6620008-6620101)
chr2 (115-180)||(33833455-33833519)
chr2 (220-256)||(2393897-2393933)
chr2 (220-256)||(14994746-14994782)
chr2 (152-180)||(45156441-45156469)
[»] chr4 (11 HSPs)
chr4 (115-255)||(959081-959222)
chr4 (201-256)||(42096814-42096869)
chr4 (115-180)||(52450177-52450242)
chr4 (119-262)||(50197759-50197911)
chr4 (191-255)||(30863265-30863329)
chr4 (201-256)||(36139052-36139107)
chr4 (113-195)||(8434220-8434303)
chr4 (119-193)||(17399607-17399683)
chr4 (123-180)||(29405139-29405196)
chr4 (123-212)||(1845830-1845921)
chr4 (220-256)||(24393686-24393722)
[»] chr6 (11 HSPs)
chr6 (121-180)||(2725848-2725907)
chr6 (114-180)||(23252894-23252960)
chr6 (190-256)||(30841213-30841279)
chr6 (201-253)||(2904798-2904850)
chr6 (201-239)||(3764594-3764632)
chr6 (202-252)||(7477028-7477078)
chr6 (202-252)||(7477394-7477444)
chr6 (202-252)||(7477760-7477810)
chr6 (114-213)||(28992435-28992536)
chr6 (199-256)||(33699431-33699488)
chr6 (228-256)||(6381151-6381179)
[»] chr3 (5 HSPs)
chr3 (122-212)||(35310400-35310492)
chr3 (115-253)||(18360068-18360206)
chr3 (122-178)||(20991558-20991614)
chr3 (203-256)||(36703028-36703081)
chr3 (152-180)||(40355898-40355926)
[»] chr7 (10 HSPs)
chr7 (115-180)||(33818958-33819023)
chr7 (117-181)||(3756376-3756440)
chr7 (222-253)||(46080930-46080961)
chr7 (219-253)||(30755759-30755793)
chr7 (219-256)||(3756512-3756549)
chr7 (220-249)||(10084618-10084647)
chr7 (220-253)||(41909392-41909425)
chr7 (220-256)||(16862826-16862862)
chr7 (216-256)||(21455420-21455460)
chr7 (220-256)||(31756771-31756807)
[»] scaffold0004 (1 HSPs)
scaffold0004 (115-256)||(130667-130810)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 430
Target Start/End: Original strand, 3851597 - 3852035
Alignment:
Q  20 gtatattcattaagtatgcgtctaccctttaaaattcatatttaagttactattgatacataacagagcccacta------------atgatattagagt 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||            |||||||||||||    
T  3851597 gtatactcattaagtatgcgtctaccctttaaaattcatatttaagttactgttgatacataacagagcccactatagagcccgctaatgatattagagt 3851696  T
Q  108 gtttcttgataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactcgcaagtgtattttcagtataagttaac 207  Q
    ||||||| ||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  3851697 gtttctt-ataattgttcttctgtcgtctgtttttcctcatccccgtcaaaatagccgagcgtgagttaactcgcaagtgtattttcagtgtgagttaac 3851795  T
Q  208 tcacgt------------tggataggaatgagcaaaaacagatgagagaagagcaattctcgtgtttcttttcataaattgtttagtat--cttttatta 293  Q
    ||| ||            |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  3851796 tcatgtaggaactcacgctggacaggaatgagcaaaaacagatgagagaagagcaattctcatgtttcttttcataaattgtttagtatttcttttatta 3851895  T
Q  294 gccaatatcagattcttgaaatgaatgatattggagtgtttcttttaatttttctggtcaacatgcag---tcttatagtttgtgtttccaggaaacaaa 390  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  3851896 gccaatatcagattcttgaaacaaatgatattggagtgtttcttttaatttttctggtcaacatgcagcttaattatagtttgtgtttccaggaaacaaa 3851995  T
Q  391 tgtaaaccagataacgttccataagtttttcgagaataat 430  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  3851996 tgtaaaccatttaacgttccataagtttttcgagaataat 3852035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 623014 - 622911
Alignment:
Q  112 cttgataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaact--cgcaagtgtattttcagtataagttaactc 209  Q
    ||||||||||||| |||| |||||||||||| || ||| ||||||||||||| |||| ||||||||||  |||| ||||||||||||  | |||||||||    
T  623014 cttgataattgctattctcccatctgtttttgcttatccccgtcaaaatagctgagcctgagttaactcgcgcatgtgtattttcagcgtgagttaactc 622915  T
Q  210 acgt 213  Q
    ||||    
T  622914 acgt 622911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 21322632 - 21322539
Alignment:
Q  121 tgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaact--cgcaagtgtattttcagtataagttaactcacg 212  Q
    ||||||||| |||||||||||| ||||   ||||||||||||||||| |||||||||||  |||| ||||||| |||   ||||||||||||||    
T  21322632 tgctcttctcccatctgtttttgctcaatcccgtcaaaatagccgagggtgagttaactcacgcaggtgtattctcaacgtaagttaactcacg 21322539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 43909045 - 43908994
Alignment:
Q  204 taactcacgttggataggaatgagcaaaaacagatgagagaagagcaattct 255  Q
    |||||||||| | | |||||||||||||||| |||| |||||||||||||||    
T  43909045 taactcacgtagaacaggaatgagcaaaaactgatgggagaagagcaattct 43908994  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 253
Target Start/End: Complemental strand, 50899083 - 50899052
Alignment:
Q  222 aatgagcaaaaacagatgagagaagagcaatt 253  Q
    ||||||||||||||||||||||||||||||||    
T  50899083 aatgagcaaaaacagatgagagaagagcaatt 50899052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 52186963 - 52186916
Alignment:
Q  133 atctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc 180  Q
    |||||||||| ||||  ||| |||||||||||||||||||||||||||    
T  52186963 atctgtttttgctcacttccatcaaaatagccgagcgtgagttaactc 52186916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 622891 - 622841
Alignment:
Q  201 agttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaa 251  Q
    ||||||||||||| |||  |||||||||||||||| ||| |||||||||||    
T  622891 agttaactcacgtaggacgggaatgagcaaaaacaaatgggagaagagcaa 622841  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 9978898 - 9978964
Alignment:
Q  190 ttttcagtataagttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||||||| | ||||||||||||| | || |||||||||||||| | |||  |||||||||||||||    
T  9978898 ttttcagtgtgagttaactcacgtagtatgggaatgagcaaaaataaatggaagaagagcaattctc 9978964  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 32827729 - 32827806
Alignment:
Q  121 tgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc--gcaagtgtattttcag 196  Q
    ||||||||| |||||||||||| |||||  | ||||||||||||||| ||  ||||||||  ||| ||||||||||||    
T  32827729 tgctcttctcccatctgtttttgctcattcctgtcaaaatagccgagtgtaggttaactcatgcatgtgtattttcag 32827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 9873812 - 9873756
Alignment:
Q  122 gctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaac 178  Q
    |||||||| |||||||||||| || ||  |||||||||||||||| ||| |||||||    
T  9873812 gctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtaagttaac 9873756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 32303607 - 32303750
Alignment:
Q  115 gataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaact--cgcaagtgtattttcagtataagttaactcacg 212  Q
    ||||||||||||||| ||||||| |||| ||||| | ||||||||||| ||||||||||||||||  |||| ||||||||||||  | |||||||||||     
T  32303607 gataattgctcttcttccatctgattttgctcattttcgtcaaaatagtcgagcgtgagttaactcacgcatgtgtattttcagcgtgagttaactcaca 32303706  T
Q  213 ttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    | |||  | ||||||||||||| |||| ||||||||||||||||    
T  32303707 taggacggaaatgagcaaaaacggatgggagaagagcaattctc 32303750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 37442674 - 37442577
Alignment:
Q  117 taattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc--gcaagtgtattttcagtataagttaactcacgt 213  Q
    ||||||||||||| |||||||||||| |||||  ||||| ||||||||||||||||||||||||  |||  ||||||||||  || |||||||||||||    
T  37442674 taattgctcttcttccatctgtttttgctcattcccgtc-aaatagccgagcgtgagttaactcatgcagatgtattttcaacatgagttaactcacgt 37442577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 9828179 - 9828277
Alignment:
Q  115 gataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaa--ctcgcaagtgtattttcagtataagttaactcacg 212  Q
    ||||||||||||||| ||||||| |||| |||||  ||||| ||||||  |||||||||||||  | | ||||||||||||||| || ||||||||||||    
T  9828179 gataattgctcttctcccatctggttttgctcattcccgtc-aaatagtagagcgtgagttaacccacacaagtgtattttcag-atgagttaactcacg 9828276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 8254696 - 8254794
Alignment:
Q  114 tgataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaact--cgcaagtgtattttcagtataagttaactcac 211  Q
    |||||||||||||||| |||| ||||||| ||| | ||||| |||| |||||| ||| | ||||||  |||| ||| ||||||||| | |||||||||||    
T  8254696 tgataattgctcttctcccatatgtttttactcgtttccgt-aaaaaagccgaacgtaaattaactcacgcatgtgcattttcagtgtgagttaactcac 8254794  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 12750154 - 12750238
Alignment:
Q  115 gataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaact--cgcaagtgtattttcagt 197  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||  |||| |||||||||||||    
T  12750154 gataattgctcttctcccatctgtttttcctcatccccgtccaaatagccgagcgtgagttaactcacgcaggtgtattttcagt 12750238  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 22842147 - 22842212
Alignment:
Q  115 gataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc 180  Q
    |||||||| |||||| |||||||||||| |||||  |||||||||||| |||||||||||||||||    
T  22842147 gataattgttcttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagttaactc 22842212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 33102172 - 33102092
Alignment:
Q  117 taattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaact--cgcaagtgtattttca 195  Q
    |||||||||||||   |||||||||| |||||  |||||||||||||||||||||||||||||  ||||| ||||||||||    
T  33102172 taattgctcttctcttatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcacgcaaatgtattttca 33102092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 12750274 - 12750329
Alignment:
Q  201 agttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    ||||||||||||| || | |||||||||||||||||||| ||||||||||||||||    
T  12750274 agttaactcacgtagggtgggaatgagcaaaaacagatgggagaagagcaattctc 12750329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 5995179 - 5995270
Alignment:
Q  168 cgtgagttaactcgcaa--gtgtatttt-cagtataagttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    ||||||||||||||||   ||||||||| |||  | ||||||||||||||| | | ||||||||||||| ||||| ||||||||||||||||    
T  5995179 cgtgagttaactcgcatatgtgtatttttcagcgtgagttaactcacgttgaacatgaatgagcaaaaaaagatgggagaagagcaattctc 5995270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 157528 - 157473
Alignment:
Q  201 agttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||||||||||||| ||| |||||||||||||| ||||| || |||||||||||||    
T  157528 agttaactcacgttagatgggaatgagcaaaaatagatgtgaaaagagcaattctc 157473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 15020090 - 15020037
Alignment:
Q  203 ttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||||||| ||||||||  |||||||||||||||||  ||||||||||||||||    
T  15020090 ttaactcatgttggatataaatgagcaaaaacagataggagaagagcaattctc 15020037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 38006619 - 38006564
Alignment:
Q  122 gctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaa 177  Q
    |||||||| |||||||||||| |||||  |||| ||||||| ||||||||||||||    
T  38006619 gctcttctcccatctgtttttgctcattcccgttaaaatagtcgagcgtgagttaa 38006564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 44255301 - 44255356
Alignment:
Q  201 agttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    ||||||||||||||||| || ||| ||||||| ||||| |||||||| ||||||||    
T  44255301 agttaactcacgttggacagaaataagcaaaatcagattagagaagaacaattctc 44255356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 33102138 - 33102171
Alignment:
Q  220 ggaatgagcaaaaacagatgagagaagagcaatt 253  Q
    ||||||||||||||||||| ||||||||||||||    
T  33102138 ggaatgagcaaaaacagataagagaagagcaatt 33102171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 8150130 - 8150094
Alignment:
Q  220 ggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  8150130 ggaatgagcaaaaacagatgagagaagggcaactctc 8150094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 117 - 256
Target Start/End: Original strand, 13387318 - 13387459
Alignment:
Q  117 taattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaact--cgcaagtgtattttcagtataagttaactcacgtt 214  Q
    |||||| | |||| ||||||||||||| ||||  |||||||||||| | ||||||||||||||  || | |||||||||||  || |||||||||||||     
T  13387318 taattgtttttctcccatctgtttttcttcattcccgtcaaaatagtcaagcgtgagttaactcacgtatgtgtattttcatcatgagttaactcacgta 13387417  T
Q  215 ggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||   |||||| |||||| ||||||||||||| ||||||||    
T  13387418 ggacgagaatgaacaaaaatagatgagagaagaacaattctc 13387459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 39555984 - 39555913
Alignment:
Q  185 gtgtattttcagtataagttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    ||||||||| ||  ||||||||||||||| ||| | |||||| |||||||||||| ||||||| ||||||||    
T  39555984 gtgtatttttagcgtaagttaactcacgtaggacatgaatgaacaaaaacagatgtgagaagaacaattctc 39555913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 6620008 - 6620101
Alignment:
Q  121 tgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc--gcaagtgtattttcagtataagttaactcacg 212  Q
    |||||||||  ||| ||||||| |||||  ||||||||||||  ||||||||||||||||  ||| ||||||| || |||| ||||||||||||    
T  6620008 tgctcttctctcatttgtttttgctcattcccgtcaaaatagttgagcgtgagttaactcatgcaggtgtattctctgtatgagttaactcacg 6620101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 33833519 - 33833455
Alignment:
Q  115 gataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc 180  Q
    ||||||||||||||| |||||||||||| |||||  | ||| ||||||||||||||| ||||||||    
T  33833519 gataattgctcttctcccatctgtttttactcattcctgtc-aaatagccgagcgtgggttaactc 33833455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 2393933 - 2393897
Alignment:
Q  220 ggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  2393933 ggaatgagcaaaaacatatgggagaagagcaattctc 2393897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 14994782 - 14994746
Alignment:
Q  220 ggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  14994782 ggaatgagcaaaaacaaatgggagaagagcaattctc 14994746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 45156469 - 45156441
Alignment:
Q  152 cgtcaaaatagccgagcgtgagttaactc 180  Q
    |||||||||||||||||||||||||||||    
T  45156469 cgtcaaaatagccgagcgtgagttaactc 45156441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 959081 - 959222
Alignment:
Q  115 gataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc--gcaagtgtattttcagtataagttaactcacg 212  Q
    ||||||||||||||| |||||| ||||| ||||| ||||| ||| ||  ||||||| ||||||||   ||| ||||||||||||  ||||||||||||||    
T  959081 gataattgctcttctcccatctatttttgctcatttccgttaaa-taatcgagcgtcagttaactgatgcaggtgtattttcagcgtaagttaactcacg 959179  T
Q  213 ttggataggaatgagcaaaaacagatgagagaagagcaattct 255  Q
    | ||   | ||||| |||||||| |||||||||||||||||||    
T  959180 tagggcggaaatgaacaaaaacaaatgagagaagagcaattct 959222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 42096814 - 42096869
Alignment:
Q  201 agttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  42096814 agttaactcacgttggataggaatgagcaaaaatagatgggagaagagcaattctc 42096869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 52450242 - 52450177
Alignment:
Q  115 gataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc 180  Q
    |||||||||| | || |||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  52450242 gataattgctttcctcccatctgtttttactcattcccgtcaaaatagccgagcgtgagttaactc 52450177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 262
Target Start/End: Original strand, 50197759 - 50197911
Alignment:
Q  119 attgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc--gcaagtgta-------ttttcagtataagttaactc 209  Q
    ||||||||||| ||||| |||||| ||| || ||||||||||||||||| ||||||||||||  | | |||||       |||||||| || | ||||||    
T  50197759 attgctcttctcccatccgtttttgctcgtcaccgtcaaaatagccgagtgtgagttaactcaagtaggtgtaggtgtatttttcagtgtatgctaactc 50197858  T
Q  210 acgttggataggaatgagcaaaaacagatgagagaagagcaattctcgtgttt 262  Q
    ||||| ||  | ||||| |||||| ||||| |||||||||||||||| |||||    
T  50197859 acgtttgacggaaatgaacaaaaagagatgggagaagagcaattctcttgttt 50197911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 30863329 - 30863265
Alignment:
Q  191 tttcagtataagttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattct 255  Q
    ||||||| | |||||||| |||||||| ||||||||||||||||| |||  ||||||||||||||    
T  30863329 tttcagtgtgagttaacttacgttggacaggaatgagcaaaaacaaatggaagaagagcaattct 30863265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 36139052 - 36139107
Alignment:
Q  201 agttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||||||||| |||||||  ||||||||||||||| ||| ||||||||||||||||    
T  36139052 agttaactcatgttggatgagaatgagcaaaaacatatgggagaagagcaattctc 36139107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 8434303 - 8434220
Alignment:
Q  113 ttgataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc--gcaagtgtattttca 195  Q
    |||||||||||||||||  ||||| ||||| ||||| || ||| ||||| ||||||||| ||||||||   ||||||||||||||    
T  8434303 ttgataattgctcttctctcatctttttttgctcatttctgtc-aaataaccgagcgtgcgttaactcatacaagtgtattttca 8434220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 17399607 - 17399683
Alignment:
Q  119 attgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaact--cgcaagtgtatttt 193  Q
    |||||||||||||| | ||||||| ||| |  | |||||||||||| ||||||||||||||  |||||||| |||||    
T  17399607 attgctcttctgccgtatgtttttactcgttcctgtcaaaatagcctagcgtgagttaactaacgcaagtgcatttt 17399683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 29405196 - 29405139
Alignment:
Q  123 ctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc 180  Q
    ||||||| |||| || ||||  |||| ||||||||||||||||||||||||| |||||    
T  29405196 ctcttctcccatatgattttgttcatttccgtcaaaatagccgagcgtgagtgaactc 29405139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 1845830 - 1845921
Alignment:
Q  123 ctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaact--cgcaagtgtattttcagtataagttaactcacg 212  Q
    ||||||| | |||||||||| |||||  ||||||| |||| | ||||||||||||||   ||| ||||||| | ||||| ||||||||||||    
T  1845830 ctcttctcctatctgttttttctcattcccgtcaatatagtcaagcgtgagttaacttatgcatgtgtattctgagtatgagttaactcacg 1845921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 24393686 - 24393722
Alignment:
Q  220 ggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  24393686 ggaatgagcaaaaacatatgggagaagagcaattctc 24393722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 2725907 - 2725848
Alignment:
Q  121 tgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc 180  Q
    ||||||||| |||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  2725907 tgctcttctcccatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactc 2725848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 23252960 - 23252894
Alignment:
Q  114 tgataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc 180  Q
    ||||||||||| |||| ||||||| |||| |||||  ||||||||||||||||||||||||||||||    
T  23252960 tgataattgcttttctcccatctggttttgctcattcccgtcaaaatagccgagcgtgagttaactc 23252894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 30841213 - 30841279
Alignment:
Q  190 ttttcagtataagttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||||||||| ||||||||||||| | | |||||| |||||||||||||| ||||||||||||||||    
T  30841213 ttttcagtatgagttaactcacgtagaacaggaataagcaaaaacagatgtgagaagagcaattctc 30841279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 2904798 - 2904850
Alignment:
Q  201 agttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaatt 253  Q
    |||||||||||||||||   |||||||||||| || |||||||||||||||||    
T  2904798 agttaactcacgttggaagagaatgagcaaaatcaaatgagagaagagcaatt 2904850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 3764632 - 3764594
Alignment:
Q  201 agttaactcacgttggataggaatgagcaaaaacagatg 239  Q
    |||||||||| || |||||||||||||||||||||||||    
T  3764632 agttaactcatgtaggataggaatgagcaaaaacagatg 3764594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 7477078 - 7477028
Alignment:
Q  202 gttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaat 252  Q
    ||||||||||||||||| |||||||| |||| || ||| ||||||||||||    
T  7477078 gttaactcacgttggatgggaatgagtaaaaccaaatgggagaagagcaat 7477028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 7477444 - 7477394
Alignment:
Q  202 gttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaat 252  Q
    ||||||||||||||||| |||||||| |||| || ||| ||||||||||||    
T  7477444 gttaactcacgttggatgggaatgagtaaaaccaaatgggagaagagcaat 7477394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 7477810 - 7477760
Alignment:
Q  202 gttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaat 252  Q
    ||||||||||||||||| |||||||| |||| || ||| ||||||||||||    
T  7477810 gttaactcacgttggatgggaatgagtaaaaccaaatgggagaagagcaat 7477760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 28992536 - 28992435
Alignment:
Q  114 tgataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactcgcaa--gtgtattttcagtataagttaactcac 211  Q
    |||||||| ||||||| ||||||| |||| |||||  |||| ||||||| ||| ||||| ||||||| ||   ||||||||||||  | |||||||||||    
T  28992536 tgataatttctcttctcccatctggttttgctcattcccgttaaaatagacgatcgtgatttaactcacacatgtgtattttcagcgtgagttaactcac 28992437  T
Q  212 gt 213  Q
    ||    
T  28992436 gt 28992435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 33699431 - 33699488
Alignment:
Q  199 taagttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    ||||||||||  |||||||   |||||||||||||||||||  |||||||||||||||    
T  33699431 taagttaacttgcgttggacgagaatgagcaaaaacagatggaagaagagcaattctc 33699488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 6381179 - 6381151
Alignment:
Q  228 caaaaacagatgagagaagagcaattctc 256  Q
    |||||||||||||||||||||||||||||    
T  6381179 caaaaacagatgagagaagagcaattctc 6381151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 35310492 - 35310400
Alignment:
Q  122 gctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaact--cgcaagtgtattttcagtataagttaactcacg 212  Q
    |||| ||| |||||| ||||| |||||| |||||||||||||||||||||||||||||  | || ||||||| ||||| | ||||||||||||    
T  35310492 gctcatctcccatctatttttgctcatccccgtcaaaatagccgagcgtgagttaactcacacaggtgtattctcagtgtgagttaactcacg 35310400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 18360206 - 18360068
Alignment:
Q  115 gataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc--gcaagtgtattttcagtataagttaactcacg 212  Q
    ||||||||||||||| | ||||| ||||  ||||  ||||||||| |||  || ||||||||||||  ||| ||||||||||||  | |||||||| |||    
T  18360206 gataattgctcttctcctatctggttttgatcattcccgtcaaaacagc--agtgtgagttaactcacgcaggtgtattttcagcgtgagttaacttacg 18360109  T
Q  213 ttggataggaatgagcaaaaacagatgagagaagagcaatt 253  Q
    |   |   |||||||||||||||||||||||||||||||||    
T  18360108 taaaacgagaatgagcaaaaacagatgagagaagagcaatt 18360068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 20991558 - 20991614
Alignment:
Q  122 gctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaac 178  Q
    |||||||| ||||||  |||| |||||  ||||||||||||||||||||||||||||    
T  20991558 gctcttctcccatctaattttgctcattcccgtcaaaatagccgagcgtgagttaac 20991614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 36703081 - 36703028
Alignment:
Q  203 ttaactcacgttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    ||||||||||| |||  |||||||||||||||| |||||||| || ||||||||    
T  36703081 ttaactcacgtaggacgggaatgagcaaaaacatatgagagatgaacaattctc 36703028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 180
Target Start/End: Original strand, 40355898 - 40355926
Alignment:
Q  152 cgtcaaaatagccgagcgtgagttaactc 180  Q
    |||||||||||||||||||||||||||||    
T  40355898 cgtcaaaatagccgagcgtgagttaactc 40355926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 33819023 - 33818958
Alignment:
Q  115 gataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc 180  Q
    |||||||||| |||| |||||||||||| |||||| |||||||| ||| ||| |||||||||||||    
T  33819023 gataattgcttttcttccatctgtttttgctcatccccgtcaaagtaggcgaacgtgagttaactc 33818958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 3756376 - 3756440
Alignment:
Q  117 taattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactcg 181  Q
    ||||||||||||| |||| ||||||| |||||  |||||||||||| |||| |||||||||||||    
T  3756376 taattgctcttctcccatttgtttttgctcattcccgtcaaaatagtcgagtgtgagttaactcg 3756440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 253
Target Start/End: Original strand, 46080930 - 46080961
Alignment:
Q  222 aatgagcaaaaacagatgagagaagagcaatt 253  Q
    ||||||||||||||||||||||||||||||||    
T  46080930 aatgagcaaaaacagatgagagaagagcaatt 46080961  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 30755759 - 30755793
Alignment:
Q  219 aggaatgagcaaaaacagatgagagaagagcaatt 253  Q
    |||||||||||||||||||| ||||||||||||||    
T  30755759 aggaatgagcaaaaacagataagagaagagcaatt 30755793  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 3756512 - 3756549
Alignment:
Q  219 aggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||||||||||||||||| || ||||||||||||||||    
T  3756512 aggaatgagcaaaaacaggtgggagaagagcaattctc 3756549  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 10084647 - 10084618
Alignment:
Q  220 ggaatgagcaaaaacagatgagagaagagc 249  Q
    ||||||||||||||||||||||||||||||    
T  10084647 ggaatgagcaaaaacagatgagagaagagc 10084618  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 41909392 - 41909425
Alignment:
Q  220 ggaatgagcaaaaacagatgagagaagagcaatt 253  Q
    |||||||| |||||||||||||||||||||||||    
T  41909392 ggaatgagaaaaaacagatgagagaagagcaatt 41909425  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 16862826 - 16862862
Alignment:
Q  220 ggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  16862826 ggaatgagcaaaaacagatgggagaaaagcaattctc 16862862  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 21455420 - 21455460
Alignment:
Q  216 gataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    ||||| |||||||||||||||||||||||||  ||||||||    
T  21455420 gatagaaatgagcaaaaacagatgagagaaggtcaattctc 21455460  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 31756807 - 31756771
Alignment:
Q  220 ggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  31756807 ggaatgagcaaaaatagatgggagaagagcaattctc 31756771  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 130810 - 130667
Alignment:
Q  115 gataattgctcttctgccatctgtttttcctcatctccgtcaaaatagccgagcgtgagttaactc--gcaagtgtatttt-cagtataagttaactcac 211  Q
    |||||||||||  || | ||||||||||  ||||  |||||||| || |||| |||||||||||||  ||| ||||||||| |||| | |||||||||||    
T  130810 gataattgctcccctccaatctgtttttgttcattcccgtcaaa-taaccgaacgtgagttaactcacgcaggtgtatttttcagtgtgagttaactcac 130712  T
Q  212 gttggataggaatgagcaaaaacagatgagagaagagcaattctc 256  Q
    ||  ||  | |||||| ||||||| | | ||||||||||||||||    
T  130711 gtaagacggaaatgagtaaaaacatacgggagaagagcaattctc 130667  T

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