View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9046_high_6 (Length: 337)
Name: NF9046_high_6
Description: NF9046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9046_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 31501719 - 31501455
Alignment:
| Q |
18 |
aaaaactcaaggattgcattgaagaggatgattttgcagtaacaggggaaatgggaagagtagcagaaagcatcatcattgtagcttgttcttcttgttc |
117 |
Q |
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| T |
31501719 |
aaaaactcagggattgcattgaagaggatgattttgcagtaacaggggaaatgggaagagtagcagaaagcatcatcattgtagcttgttcttcttgttc |
31501620 |
T |
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| Q |
118 |
tatggtttgtgaagttatttattcatgcaatgttacaaaatgaatgaatgagaatgagagaataaataggtaaaattctgttcggtggttttactacaag |
217 |
Q |
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| T |
31501619 |
tatggtttgtgaagttatttattcatgcaatgttacaaaatgaatgaatgaga------gaataaataggtaaaactctgttcggtggttttactacaag |
31501526 |
T |
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| Q |
218 |
gtgtcaacaaggtgtcaagtttcaatgtaccagaaaacattaaaagctgtctttgttacatttgaaccttg |
288 |
Q |
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| T |
31501525 |
gtgtcaacaaggtgtcaagtttcaatgtaccagaaaacattaaaagctgtctttgttacatttgaaccttg |
31501455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 27612222 - 27612364
Alignment:
| Q |
23 |
ctcaaggattgcattgaagaggatgattttgcagtaacaggggaaatgggaagagtagcagaaagcatcatcattgtagcttgttcttcttgttctatgg |
122 |
Q |
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| T |
27612222 |
ctcagggattgcattgaagaggatgattttgcagtaataggggaaatgggaagagtagcagaaagcatcatgattgtagc---ttcttcttgttctatag |
27612318 |
T |
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| Q |
123 |
tttgtgaagttatttattcatgcaatgttacaaaatgaatgaatgagaat |
172 |
Q |
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| T |
27612319 |
tttgtgaag----ttattcgtgcaatgttacaaaatgaatgaatgagaat |
27612364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 34500745 - 34500855
Alignment:
| Q |
23 |
ctcaaggattgcattgaagaggatgattttgcagtaacaggggaaatgggaagagtagcagaaagcatcatcattgtagcttgttcttcttgttctatgg |
122 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |
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| T |
34500745 |
ctcagggattgcattgaagaggatgattttgcagtaataggggaaatgggaagagtagcagaaagcatcatgattgtagc---ttcttcttgttctatag |
34500841 |
T |
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| Q |
123 |
tttgtgaagttatt |
136 |
Q |
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||||| |||||||| |
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| T |
34500842 |
tttgtcaagttatt |
34500855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 34500873 - 34500926
Alignment:
| Q |
227 |
aggtgtcaagtttcaatgtaccagaaaacattaaaagctgtctttgttacatttg |
281 |
Q |
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| T |
34500873 |
aggtgtcaagtttcaatgtaccag-aaacatttaaagctgtctttgttacatttg |
34500926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 27612387 - 27612440
Alignment:
| Q |
227 |
aggtgtcaagtttcaatgtaccagaaaacattaaaagctgtctttgttacatttg |
281 |
Q |
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| T |
27612387 |
aggtgtcaagtttcaatgtaccag-aaacatttaaagctgtctttgttatatttg |
27612440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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