View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9046_low_1 (Length: 895)
Name: NF9046_low_1
Description: NF9046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9046_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 562 - 880
Target Start/End: Original strand, 19049485 - 19049803
Alignment:
| Q |
562 |
cctaataaagctatagtcatagacgcctttcttttcttctcgtttccgctcccttctctctaacaaacctccacagccgcaaccctctgccgcacctcaa |
661 |
Q |
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| T |
19049485 |
cctaataaagctatagtcatagacgcctttcttttcttctcgtttccgctcccctctctctaacaaacctccacagccgcaaccctttgccgcacctcaa |
19049584 |
T |
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| Q |
662 |
ttctggccgccacgatgtagaccatggcttttggtggtgcaatcgagttcttttggtggcttcttgttgccgtcgtgtttttgcggtactgttctatggt |
761 |
Q |
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| T |
19049585 |
ttctggccgccacgatgtagaccatggcttttggtggtgcaatcgagttcttttggtggcttcttgttgccgccgcgtttttgcggtactgttctatggt |
19049684 |
T |
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| Q |
762 |
ctaatcttggtttcgcgtttgcgacacgttgatttgcgtcgacctagggatggggtttacgacggttgtgctgctttgtggtcacaccgtgtgtctgtcc |
861 |
Q |
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| T |
19049685 |
ctaatcttggtttcgcgtttgcgacacgttgatttgcgtcgacctagggatggggtttacgacagttgtgctgctttgtggtcacaccgtgtgtctgtcc |
19049784 |
T |
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| Q |
862 |
tctcgtgaatcggtctctg |
880 |
Q |
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| T |
19049785 |
tctcgtgaatcggtctctg |
19049803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 272 - 431
Target Start/End: Original strand, 19049194 - 19049353
Alignment:
| Q |
272 |
caatggtacgaatttacatccattaaaagtttatatagaaggcatggtgaaccaaaattaagagaagagagttgctttcttgtggttattcaattagagt |
371 |
Q |
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| T |
19049194 |
caatggtacaaatttacatccattaaaagtttatatagaaggcatggtgaaccaaaattaagagaagagagttgctttctcgtggttattcaattagagt |
19049293 |
T |
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| Q |
372 |
atttattggcctttaattatgagatggctattggtattattaagagacaatcatcttttc |
431 |
Q |
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| T |
19049294 |
atttattggcctttaattatgagatggctattggtattattaagagacaatcatcttttc |
19049353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 19049042 - 19049142
Alignment:
| Q |
125 |
ttacaaggtgtagaacaaaacactatagaaaggaaggttttgattgaacgcttcccatgagctgttaaccaacgcctcttgtctttgagtgaaactcata |
224 |
Q |
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| T |
19049042 |
ttacaaggtgtaaaacaaaacactatagaaaggaaggttttgattgaacgcttcccatgagctgttaaccaatgcctcttgtctttgagtgaaactcata |
19049141 |
T |
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| Q |
225 |
g |
225 |
Q |
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| T |
19049142 |
g |
19049142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 40847684 - 40847783
Alignment:
| Q |
125 |
ttacaaggtgtagaacaaaacactatagaaaggaaggttttgattgaacgcttcccatgagctgttaaccaacgcctcttgtctttgagtgaaactcata |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||| | |||||||| |||| |
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| T |
40847684 |
ttacaaggtgtagaacaaaacactatagaaaggaaggttttgattgaaggtttcccatgagctactaaccaaagcctcttgtctctcagtgaaacccata |
40847783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 18270678 - 18270605
Alignment:
| Q |
132 |
gtgtagaacaaaacactatagaaaggaaggttttgattgaacgcttcccatgagctgttaaccaacgcctcttg |
205 |
Q |
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| T |
18270678 |
gtgtagaacaaaacactgtatttaggaaggttttgtttaaatgcttcccatgagctattaactaaagcctcttg |
18270605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 34685702 - 34685629
Alignment:
| Q |
132 |
gtgtagaacaaaacactatagaaaggaaggttttgattgaacgcttcccatgagctgttaaccaacgcctcttg |
205 |
Q |
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|||||||| |||||||||||| |||||||||||| ||||| | |||||||||||| || || || |||||||| |
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| T |
34685702 |
gtgtagaagaaaacactatagccaggaaggttttgtttgaatgattcccatgagctattcactaaagcctcttg |
34685629 |
T |
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