View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9046_low_11 (Length: 384)
Name: NF9046_low_11
Description: NF9046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9046_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 2851574 - 2851204
Alignment:
| Q |
1 |
attagcttcaaataatatgttaatccctctatgcctttggattctgatcttttaaattttcatgtttattgtccttcaaccgaatagggttcacacaaat |
100 |
Q |
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| T |
2851574 |
attagattaaaataatatgttaatccctctatgcctttggattctgatcttttaaattttcatgtttattgtccttcaaccgaatagggttcacacaaat |
2851475 |
T |
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| Q |
101 |
atgtagcttttagtgcgtgtttgggtgaacattttgtcaaatgtgattttaaatacttaaaattggtttggttacaattgaattagaggtgaagtgattt |
200 |
Q |
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| T |
2851474 |
atgtagcttttagtgcgtgttcgggtgaacattttgtcaaatgtgattttaaatacttaaaattggtttggttacaattgaattagaggtgaagtgattt |
2851375 |
T |
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| Q |
201 |
ttgtttgaatattttgctctagaagcaatttagatgtaaaac---ttgtaaggtttttgaatgtgtgtaacccaaaatctaattattatcacttttattc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2851374 |
ttgtttgaatattttgctctagaagcaatttagatgtaaaacttgttgtaaggtttttgaatgtgtgtaacccaaaatctaattattatcacttttattc |
2851275 |
T |
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| Q |
298 |
aaactgtggtcagggcacaaaatcaattatactt-gacataaatcaaaccatgctattaaccactaatcat |
367 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
2851274 |
aaactgtggtctgggcacaaaatcaattatacttagacataaatcaaaccatgctattaaccactagtcat |
2851204 |
T |
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