View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9046_low_18 (Length: 299)
Name: NF9046_low_18
Description: NF9046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9046_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 98 - 281
Target Start/End: Original strand, 19889640 - 19889823
Alignment:
| Q |
98 |
cctgagtgagcaatgcaagctgttcaacgccaaagtatctagcggcagctagggtatcaagggcaagatcaacggctgaggtacaatgcgtatgccagca |
197 |
Q |
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| T |
19889640 |
cctgagtgagcaatgcaagctgttcaactccaaagtatctagcggcagctagagtatcaagggcaagatcaacggctgaggtacaatgcgtatgccagca |
19889739 |
T |
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| Q |
198 |
cgttctctcaccacaattaggtctaggctcatgtttctgaggaacaatagaaacttgtccactgtatagaaactgcaacaggag |
281 |
Q |
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| T |
19889740 |
ccctctctcaccacaattaggtctaggctcatgtttctgaggaacaatagaaacttgtccactgtacagaaactgcaacaggag |
19889823 |
T |
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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19889541 - 19889588
Alignment:
| Q |
1 |
aaacagaagacagacacagag--agagatattgtgtgtttgttttaag |
46 |
Q |
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| T |
19889541 |
aaacagaagacagacacagagagagagatattgtgtgtttgttttaag |
19889588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 272
Target Start/End: Complemental strand, 35317670 - 35317496
Alignment:
| Q |
98 |
cctgagtgagcaatgcaagctgttcaacgccaaagtatctagcggcagctagggtatcaagggcaagatcaacggctgaggtacaatgcgtatgccagca |
197 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||||||||||||| |||||||| |||||||| || |
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| T |
35317670 |
cctgagtgagtaatgcaagctgttcaactccaaagtatctagcggctgcaagagtatcaagagcaagatcaacggctgaagtacaatgtgtatgccaaca |
35317571 |
T |
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| Q |
198 |
cgttctctcaccacaattaggtctaggctcatgtttctgaggaacaatagaaacttgtccactgtatagaaactg |
272 |
Q |
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| T |
35317570 |
accacggtcaccacaattaggcctaggttcatgtttctgaggaacaatagaaacttgtccactgtacagaaactg |
35317496 |
T |
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