View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9046_low_3 (Length: 874)
Name: NF9046_low_3
Description: NF9046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9046_low_3 |
 | |
|
| [»] scaffold1099 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 639; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 224 - 866
Target Start/End: Original strand, 55824801 - 55825443
Alignment:
| Q |
224 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55824801 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
55824900 |
T |
|
| Q |
324 |
ccaacggaaaggcagaaagccaacgcaagaactaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55824901 |
ccaacggaaaggcagaaagccaacgcaagaaccaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
55825000 |
T |
|
| Q |
424 |
aagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccat |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825001 |
aagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccat |
55825100 |
T |
|
| Q |
524 |
ctctgcataccacaaagccgtctccattgcagcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtac |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825101 |
ctctgcataccacaaagccgtctccattgcagcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtac |
55825200 |
T |
|
| Q |
624 |
attccttgcaactcagccatgataactgcctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgaca |
723 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825201 |
attccttgcaactcagccatgataactgcctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgaca |
55825300 |
T |
|
| Q |
724 |
tcctgatctttccgctgaattttgaaatcgagagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgc |
823 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825301 |
tcctgatctttccgctgaattttgaaatcgagagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgc |
55825400 |
T |
|
| Q |
824 |
tttagcctcttccaaaacaagttctagctttttctctgcttct |
866 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825401 |
tttagcctcttccaaaacaagttctagctttttctctgcttct |
55825443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 224 - 866
Target Start/End: Complemental strand, 56150180 - 56149538
Alignment:
| Q |
224 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56150180 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
56150081 |
T |
|
| Q |
324 |
ccaacggaaaggcagaaagccaacgcaagaactaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56150080 |
ccaacggaaaggcagaaagccaacgcaagaaccaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
56149981 |
T |
|
| Q |
424 |
aagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccat |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
56149980 |
aagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaatttgccat |
56149881 |
T |
|
| Q |
524 |
ctctgcataccacaaagccgtctccattgcagcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtac |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149880 |
ctctgcataccacaaagccgtctccattgcagcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtac |
56149781 |
T |
|
| Q |
624 |
attccttgcaactcagccatgataactgcctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgaca |
723 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149780 |
attccttgcaactcagccatgataactgcctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgaca |
56149681 |
T |
|
| Q |
724 |
tcctgatctttccgctgaattttgaaatcgagagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgc |
823 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149680 |
tcctgatctttccgctgaattttgaaatcgagagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgc |
56149581 |
T |
|
| Q |
824 |
tttagcctcttccaaaacaagttctagctttttctctgcttct |
866 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149580 |
tttagcctcttccaaaacaagttctagctttttctctgcttct |
56149538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 55824645 - 55824774
Alignment:
| Q |
68 |
aatagctacatcttatgttgctgcctggaattagaatatacaaatagacaaaaacttatctactaagggttctaggaacatcgagaagagaaaaccagca |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
55824645 |
aatagctacatcttatgttgctgcctggaattagaatatacaaatagacaaaaacttatctactaagggttctaggaacattgagaagagaaaaccagca |
55824744 |
T |
|
| Q |
168 |
tgttaacaatgagaaatcgtatttgcacaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
55824745 |
tgttaacaatgagaaatcgtatttgcacaa |
55824774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 56150336 - 56150207
Alignment:
| Q |
68 |
aatagctacatcttatgttgctgcctggaattagaatatacaaatagacaaaaacttatctactaagggttctaggaacatcgagaagagaaaaccagca |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
56150336 |
aatagctacatcttatgttgctgcctggaattagaatatacaaatagacaaaaacttatctactaagggttctaggaacattgagaagagaaaaccagca |
56150237 |
T |
|
| Q |
168 |
tgttaacaatgagaaatcgtatttgcacaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
56150236 |
tgttaacaatgagaaatcgtatttgcacaa |
56150207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1099 (Bit Score: 131; Significance: 2e-67; HSPs: 1)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 2761 - 2895
Alignment:
| Q |
28 |
ttctttagcattgcgtgaatgcacattaaatgtcattaagaatagctacatcttatgttgctgcctggaattagaatatacaaatagacaaaaacttatc |
127 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2761 |
ttctttagcattgcgtgaatgcacataaaatgtcattaagaatagctacatcttatgttgctgcctggaattagaatatacaaatagacaaaaacttatc |
2860 |
T |
|
| Q |
128 |
tactaagggttctaggaacatcgagaagagaaaac |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2861 |
tactaagggttctaggaacatcgagaagagaaaac |
2895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University