View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9046_low_6 (Length: 576)

Name: NF9046_low_6
Description: NF9046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9046_low_6
NF9046_low_6
[»] chr3 (18 HSPs)
chr3 (123-567)||(16457187-16457630)
chr3 (301-419)||(5498456-5498574)
chr3 (326-440)||(2550169-2550283)
chr3 (326-436)||(26707862-26707972)
chr3 (326-440)||(1654579-1654693)
chr3 (327-440)||(13845996-13846109)
chr3 (326-440)||(7407737-7407851)
chr3 (302-394)||(27259474-27259566)
chr3 (326-428)||(1613208-1613310)
chr3 (326-404)||(1627966-1628044)
chr3 (301-438)||(9633427-9633564)
chr3 (335-440)||(36035301-36035406)
chr3 (332-440)||(2943197-2943305)
chr3 (370-436)||(26735681-26735747)
chr3 (305-440)||(27713422-27713554)
chr3 (337-406)||(35082990-35083059)
chr3 (318-436)||(28699109-28699227)
chr3 (301-383)||(36034997-36035079)
[»] chr8 (26 HSPs)
chr8 (302-441)||(6403572-6403711)
chr8 (302-426)||(29553608-29553732)
chr8 (301-441)||(31347327-31347467)
chr8 (326-440)||(25638810-25638924)
chr8 (326-440)||(28249058-28249172)
chr8 (326-440)||(45356095-45356209)
chr8 (302-439)||(5650929-5651066)
chr8 (305-424)||(5000661-5000780)
chr8 (326-440)||(17634454-17634568)
chr8 (334-404)||(29345442-29345512)
chr8 (301-438)||(6801815-6801952)
chr8 (326-438)||(5528746-5528858)
chr8 (302-440)||(14997600-14997738)
chr8 (326-440)||(25637647-25637761)
chr8 (457-546)||(6403766-6403857)
chr8 (327-440)||(19369893-19370006)
chr8 (327-404)||(19448452-19448529)
chr8 (327-404)||(19532547-19532624)
chr8 (327-440)||(18766921-18767034)
chr8 (316-419)||(19371273-19371376)
chr8 (302-375)||(7292813-7292885)
chr8 (356-440)||(6223434-6223518)
chr8 (445-520)||(19369769-19369846)
chr8 (445-520)||(19448612-19448689)
chr8 (445-520)||(19532387-19532464)
chr8 (498-567)||(31347854-31347922)
[»] chr1 (20 HSPs)
chr1 (17-118)||(44134843-44134944)
chr1 (302-440)||(12189931-12190069)
chr1 (300-404)||(5911683-5911787)
chr1 (343-440)||(3399642-3399739)
chr1 (302-404)||(28636882-28636984)
chr1 (326-419)||(16222781-16222874)
chr1 (297-403)||(897429-897535)
chr1 (326-440)||(51758756-51758870)
chr1 (332-419)||(13208621-13208708)
chr1 (326-404)||(15214330-15214408)
chr1 (326-388)||(37097375-37097437)
chr1 (326-440)||(18308151-18308265)
chr1 (302-422)||(17112904-17113024)
chr1 (342-405)||(15204613-15204676)
chr1 (335-404)||(1843964-1844033)
chr1 (144-193)||(44134949-44134998)
chr1 (333-437)||(39368626-39368730)
chr1 (316-433)||(20427723-20427840)
chr1 (326-383)||(15193922-15193979)
chr1 (485-538)||(17113134-17113187)
[»] chr5 (25 HSPs)
chr5 (302-424)||(9354388-9354510)
chr5 (302-404)||(9333580-9333682)
chr5 (302-404)||(12042196-12042298)
chr5 (326-440)||(17037546-17037660)
chr5 (326-440)||(5079047-5079161)
chr5 (302-439)||(30786246-30786383)
chr5 (302-386)||(18191886-18191970)
chr5 (338-440)||(40401992-40402094)
chr5 (352-440)||(37233061-37233149)
chr5 (326-440)||(7410827-7410941)
chr5 (326-404)||(31068982-31069059)
chr5 (300-402)||(10869415-10869516)
chr5 (327-440)||(23679445-23679558)
chr5 (327-440)||(23855253-23855366)
chr5 (334-404)||(19985006-19985076)
chr5 (354-440)||(42076078-42076164)
chr5 (301-384)||(31571007-31571090)
chr5 (301-366)||(12004567-12004631)
chr5 (297-419)||(30655180-30655302)
chr5 (445-520)||(23616673-23616750)
chr5 (445-520)||(23848070-23848147)
chr5 (327-361)||(31406413-31406447)
chr5 (302-363)||(17535350-17535411)
chr5 (473-546)||(42076235-42076308)
chr5 (457-520)||(18191757-18191821)
[»] chr6 (26 HSPs)
chr6 (302-439)||(29667899-29668038)
chr6 (326-440)||(16734808-16734922)
chr6 (302-440)||(1942548-1942686)
chr6 (326-440)||(15361718-15361832)
chr6 (302-428)||(23264491-23264619)
chr6 (326-440)||(11936750-11936864)
chr6 (326-440)||(12591836-12591950)
chr6 (335-440)||(11948730-11948835)
chr6 (314-440)||(34374816-34374944)
chr6 (327-440)||(14669329-14669442)
chr6 (300-400)||(9631178-9631278)
chr6 (335-420)||(2941017-2941103)
chr6 (326-404)||(15690441-15690519)
chr6 (306-404)||(23904371-23904469)
chr6 (301-404)||(4485584-4485687)
chr6 (326-404)||(6684097-6684174)
chr6 (327-404)||(17719742-17719819)
chr6 (304-383)||(6673659-6673737)
chr6 (344-407)||(10935797-10935860)
chr6 (336-435)||(30481216-30481315)
chr6 (301-419)||(7913406-7913524)
chr6 (326-437)||(27969903-27970014)
chr6 (335-419)||(6346862-6346946)
chr6 (326-402)||(4591153-4591229)
chr6 (316-405)||(9236022-9236111)
chr6 (445-520)||(17719582-17719659)
[»] chr2 (14 HSPs)
chr2 (307-440)||(11017441-11017574)
chr2 (326-440)||(15513670-15513784)
chr2 (296-440)||(41573366-41573510)
chr2 (302-440)||(24479131-24479269)
chr2 (326-440)||(30267006-30267120)
chr2 (326-440)||(31342699-31342813)
chr2 (326-440)||(44920961-44921074)
chr2 (332-404)||(7718194-7718266)
chr2 (326-404)||(40016594-40016672)
chr2 (303-437)||(7702409-7702543)
chr2 (304-404)||(26734732-26734829)
chr2 (302-438)||(22966502-22966640)
chr2 (301-437)||(15540285-15540421)
chr2 (336-396)||(27151259-27151319)
[»] chr4 (18 HSPs)
chr4 (301-403)||(24559015-24559117)
chr4 (301-404)||(4881088-4881191)
chr4 (326-440)||(43600270-43600384)
chr4 (326-440)||(47066017-47066131)
chr4 (301-440)||(37750973-37751111)
chr4 (326-438)||(4904125-4904237)
chr4 (330-401)||(48464047-48464118)
chr4 (326-439)||(53300354-53300467)
chr4 (327-404)||(1684971-1685048)
chr4 (339-399)||(21539295-21539355)
chr4 (370-439)||(21317485-21317554)
chr4 (300-383)||(26075290-26075373)
chr4 (393-440)||(48465443-48465490)
chr4 (327-376)||(1152048-1152097)
chr4 (301-366)||(4923690-4923755)
chr4 (445-520)||(1152208-1152285)
chr4 (445-520)||(1684811-1684888)
chr4 (302-419)||(2549239-2549356)
[»] scaffold0576 (1 HSPs)
scaffold0576 (326-440)||(6702-6816)
[»] chr7 (20 HSPs)
chr7 (326-443)||(10022127-10022244)
chr7 (324-440)||(26224961-26225077)
chr7 (302-440)||(26608522-26608660)
chr7 (326-440)||(30089738-30089852)
chr7 (332-419)||(26205419-26205506)
chr7 (326-404)||(4685422-4685500)
chr7 (326-440)||(26621074-26621188)
chr7 (334-440)||(20277343-20277449)
chr7 (302-436)||(26619091-26619223)
chr7 (327-404)||(9242503-9242580)
chr7 (302-436)||(3234306-3234441)
chr7 (337-440)||(16086501-16086604)
chr7 (327-405)||(16170275-16170353)
chr7 (347-396)||(3374325-3374374)
chr7 (352-433)||(27135958-27136039)
chr7 (336-405)||(8241611-8241679)
chr7 (302-363)||(14803120-14803181)
chr7 (302-363)||(15250114-15250175)
chr7 (375-439)||(26701083-26701147)
chr7 (316-419)||(28312669-28312772)
[»] scaffold0684 (1 HSPs)
scaffold0684 (327-404)||(766-843)
[»] scaffold0069 (1 HSPs)
scaffold0069 (332-404)||(40717-40789)
[»] scaffold0002 (1 HSPs)
scaffold0002 (309-400)||(446306-446397)
[»] scaffold0007 (1 HSPs)
scaffold0007 (301-435)||(8723-8855)


Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 123 - 567
Target Start/End: Complemental strand, 16457630 - 16457187
Alignment:
Q  123 ccttatggtgaaaaacttagatataaaattttcttgcagtaaattgaagggagctatcatgagttcctgagtttcaaaaatgataacaaactcgaattta 222  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16457630 ccttatggtgaaaaacttagatataaaattt-cttgcagtaaattgaagggagctatcatgagttcctgagtttcaaaaatgataacaaactcgaattta 16457532  T
Q  223 cttaaatatatccctcactcttggcgtaagcttgatgcttgcaccaaaggtgagagaaatgagagaatttttgatatctcactacaacatgattgagatt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16457531 cttaaatatatccctcactcttggcgtaagcttgatgcttgcaccaaagatgagagaaatgagagagtttttgatatctcactacaacatgattgagatt 16457432  T
Q  323 caataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaag 422  Q
    ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  16457431 caacaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagctcgtgttactaaaaag 16457332  T
Q  423 cttcagtaacattttatattaataacacttattatatgaccagtaacactaaaaaagtcacttttatattttttgaaaagttgtaaaaagtgtcgcaagg 522  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16457331 cttcagtaacattttatattaataacacttattatatgaccggtaacactaaaaaagtcacttttatattttttgaaaagttgtaaaaagtgtcgcaagg 16457232  T
Q  523 tcgtttagattaaaaattgagaatttgccaaatttgtctctgctt 567  Q
    |||| ||||||||||||||||||| |||||||||||||| |||||    
T  16457231 tcgtctagattaaaaattgagaatctgccaaatttgtctttgctt 16457187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 301 - 419
Target Start/End: Original strand, 5498456 - 5498574
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 400  Q
    |||||||||||| ||||||||| | |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||    
T  5498456 tcactacaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttagg 5498555  T
Q  401 taaaacttgtgttactaaa 419  Q
    |||||| | ||||||||||    
T  5498556 taaaacctatgttactaaa 5498574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 2550169 - 2550283
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| | ||||||||||||  | ||    
T  2550169 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaagtgttt 2550268  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  2550269 tagttacattttata 2550283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 326 - 436
Target Start/End: Original strand, 26707862 - 26707972
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||   | |||||||||| || ||    
T  26707862 taacatttgaaaatggttactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtctctgttactaaagaggtt 26707961  T
Q  426 cagtaacattt 436  Q
    |||||||||||    
T  26707962 cagtaacattt 26707972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 1654579 - 1654693
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||| ||||| | ||||||| ||||  | ||    
T  1654579 taacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaagcctgtgttattaaagtgttt 1654678  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  1654679 tagttacattttata 1654693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 327 - 440
Target Start/End: Original strand, 13845996 - 13846109
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 426  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||     
T  13845996 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgtttt 13846095  T
Q  427 agtaacattttata 440  Q
    ||| ||||||||||    
T  13846096 agttacattttata 13846109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 326 - 440
Target Start/End: Complemental strand, 7407851 - 7407737
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||    
T  7407851 taacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 7407752  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  7407751 tagttacattttata 7407737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 27259566 - 27259474
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaatt 394  Q
    ||||||||||| ||||||||| | ||||||||||||| | | ||||||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  27259566 cactacaacataattgagatttagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 428
Target Start/End: Complemental strand, 1613310 - 1613208
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| ||||| ||||||||| |   |||||||||| |||||    
T  1613310 taacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaagcccctgttactaaatagctt 1613211  T
Q  426 cag 428  Q
    |||    
T  1613210 cag 1613208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 404
Target Start/End: Complemental strand, 1628044 - 1627966
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||||||| |||||    
T  1628044 taacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaa 1627966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 301 - 438
Target Start/End: Complemental strand, 9633564 - 9633427
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 400  Q
    |||||||||||| ||||||||| | ||||| ||||||| | | |||||||| | |||||||||||| |||||||||||| |||||| | |||||||||||    
T  9633564 tcactacaacataattgagatttagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttagg 9633465  T
Q  401 taaaacttgtgttactaaaaagcttcagtaacatttta 438  Q
    |||| |   |||||||||| || || ||| ||||||||    
T  9633464 taaagcccctgttactaaagagttttagttacatttta 9633427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 36035301 - 36035406
Alignment:
Q  335 aaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacat 434  Q
    |||||||  |||||||||||||||||  |||| |||||||||||||||| |||  ||||||||||||||| || ||||||||||| ||||| ||| ||||    
T  36035301 aaaattggtactaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaagctcgtgttactaaagagctttagttacat 36035400  T
Q  435 tttata 440  Q
    ||||||    
T  36035401 tttata 36035406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 332 - 440
Target Start/End: Complemental strand, 2943305 - 2943197
Alignment:
Q  332 ttgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaa 431  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| || |||||||||||| || |  |||||||||||  | || ||| |    
T  2943305 ttgaaatttgtaattaaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggttaagcccgtgttactaaagtgttttagtta 2943206  T
Q  432 cattttata 440  Q
    |||||||||    
T  2943205 cattttata 2943197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 26735681 - 26735747
Alignment:
Q  370 taaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattt 436  Q
    ||||||||||||||||||| ||||||||||||||||    |||||||||| ||||||| ||||||||    
T  26735681 taaatttagtaacatttgaacaattgttaggtaaaatccatgttactaaagagcttcaataacattt 26735747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 440
Target Start/End: Complemental strand, 27713554 - 27713422
Alignment:
Q  305 tacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    |||| ||| ||||||||| | ||||| || |||| ||||||||| |||| |||   |||||| ||||||||||||||||||| |  |||||||||| |||    
T  27713554 tacagcataattgagatttagtaacatttaaaaaatgtaactaattcaaaaaa---gttactaattaaatttagtaacatttaaataattgttaggcaaa 27713458  T
Q  405 acttgtgttactaaaaagcttcagtaacattttata 440  Q
    || | |||||||||| || || || || ||||||||    
T  27713457 acctatgttactaaatagttttagcaatattttata 27713422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 35082990 - 35083059
Alignment:
Q  337 aattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaac 406  Q
    |||||| || |||||||||||||||||| | | |||||||||||| |||||| |||||||||| ||||||    
T  35082990 aattgttacaaaatcaagaaaaatgttagtaaataaatttagtaatatttgaacaattgttagataaaac 35083059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 436
Target Start/End: Complemental strand, 28699227 - 28699109
Alignment:
Q  318 agattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttact 416  Q
    ||||| ||||||| || ||||||||||||||||||| || || |||||||  ||| || | ||||||||||| ||| ||||||||||| | |||||||||    
T  28699227 agatttaataacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagcctgtgttact 28699129  T
Q  417 aaaaagcttcagtaacattt 436  Q
    |||    |||||||||||||    
T  28699128 aaatgatttcagtaacattt 28699109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 36034997 - 36035079
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaaca 383  Q
    |||||||||||| ||||| ||  ||| ||| || |||||||  |||||||||||||||||  |||| ||||||||||||||||    
T  36034997 tcactacaacataattgacatctaatgacacttcaaaattggtactaaatcaagaaaaataatactaattaaatttagtaaca 36035079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 302 - 441
Target Start/End: Original strand, 6403572 - 6403711
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||||||| ||||| | |||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6403572 cactacaacatgattaagatttagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggt 6403671  T
Q  402 aaaacttgtgttactaaaaagcttcagtaacattttatat 441  Q
    ||| |  |||||| ||||||||||||||||||||||||||    
T  6403672 aaagcccgtgttattaaaaagcttcagtaacattttatat 6403711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 302 - 426
Target Start/End: Original strand, 29553608 - 29553732
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |    
T  29553608 cactacaacatgattgagatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttagtt 29553707  T
Q  402 aaaacttgtgttactaaaaagcttc 426  Q
    ||| |  ||||||||||||||||||    
T  29553708 aaagcgcgtgttactaaaaagcttc 29553732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 301 - 441
Target Start/End: Original strand, 31347327 - 31347467
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 400  Q
    ||||| |||||||||||| ||| | |||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||     
T  31347327 tcactgcaacatgattgaaatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttaga 31347426  T
Q  401 taaaacttgtgttactaaaaagcttcagtaacattttatat 441  Q
    |||| | |||||||||||  | |||||||||||||||||||    
T  31347427 taaatcctgtgttactaaccatcttcagtaacattttatat 31347467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 25638810 - 25638924
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||   ||||||||||  | ||    
T  25638810 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaagtgttt 25638909  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  25638910 tagttacattttata 25638924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 326 - 440
Target Start/End: Complemental strand, 28249172 - 28249058
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||    
T  28249172 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 28249073  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  28249072 tagttacattttata 28249058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 326 - 440
Target Start/End: Complemental strand, 45356209 - 45356095
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||    
T  45356209 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 45356110  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  45356109 tagttacattttata 45356095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 302 - 439
Target Start/End: Complemental strand, 5651066 - 5650929
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    |||| |||||| |||||| |||| ||||| ||||||| | | ||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||    
T  5651066 cactgcaacataattgagtttcagtaacacttgaaaactattactaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggt 5650967  T
Q  402 aaaacttgtgttactaaaaagcttcagtaacattttat 439  Q
    |||||   |||||| ||||||||| |||  ||||||||    
T  5650966 aaaacccttgttacaaaaaagctttagttgcattttat 5650929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 305 - 424
Target Start/End: Original strand, 5000661 - 5000780
Alignment:
Q  305 tacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    |||||||| ||||||||  | | ||||||||||||||| |||| ||||  |||| ||||||| |||||||||||||||||||||||||| ||||||| ||    
T  5000661 tacaacataattgagatctagttacaattgaaaattgttactacatcatcaaaattgttactaattaaatttagtaacatttgagcaatagttaggtgaa 5000760  T
Q  405 acttgtgttactaaaaagct 424  Q
    || |||||||||||| ||||    
T  5000761 acctgtgttactaaagagct 5000780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 326 - 440
Target Start/End: Complemental strand, 17634568 - 17634454
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| |||||| |||||||| |  ||||||||||| |  ||    
T  17634568 taacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaagaaatt 17634469  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  17634468 tagttacattttata 17634454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 29345442 - 29345512
Alignment:
Q  334 gaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||    
T  29345442 gaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaa 29345512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 301 - 438
Target Start/End: Complemental strand, 6801952 - 6801815
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 400  Q
    ||||||||||||   ||||||| | ||||| ||||||| | | |||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||    
T  6801952 tcactacaacatagatgagatttagtaacacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttagg 6801853  T
Q  401 taaaacttgtgttactaaaaagcttcagtaacatttta 438  Q
    |||| |   |||||||||| || || ||| ||||||||    
T  6801852 taaagcccctgttactaaagagttttagttacatttta 6801815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 326 - 438
Target Start/End: Original strand, 5528746 - 5528858
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |  | |||||||||| ||||   |||||||||||| || ||    
T  5528746 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacactcaaacaattgttagataaagtctgtgttactaaagagttt 5528845  T
Q  426 cagtaacatttta 438  Q
     ||| ||||||||    
T  5528846 tagttacatttta 5528858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 302 - 440
Target Start/End: Original strand, 14997600 - 14997738
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||||||||| ||  | | ||| ||||||||| | ||||| |||||||||||||||||  ||||| |||||||||||||   |||||||||||    
T  14997600 cactacaacatgattgacatctagtgacacttgaaaattattactaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggt 14997699  T
Q  402 aaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    |||||   |||||||||| ||||| ||| || |||||||    
T  14997700 aaaacccatgttactaaagagctttagttaccttttata 14997738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 25637647 - 25637761
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||| ||||||| ||||||| ||||||||||| |||| | || ||||||||||||||| |  ||||||||||| |  ||    
T  25637647 taacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttaggtaaagcccgtgttactaaagaattt 25637746  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  25637747 tagttacattttata 25637761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 6403766 - 6403857
Alignment:
Q  457 tatgaccagtaacactaaaaaa--gtcacttttatattttttgaaaagttgt-aaaaagtgtcgcaaggtcgtttagattaaaaattgagaat 546  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||||||| |||||||||||||| ||||| |||| | ||||||||||||    
T  6403766 tatgaccagtaacactaaaaaaatgtcacatttatattttttgaaaagttgtaaaaaagtgtcgcaaagtcgtctagact-aaaattgagaat 6403857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 440
Target Start/End: Complemental strand, 19370006 - 19369893
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 426  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | || |||||||||| ||||    ||||||||||| || ||     
T  19370006 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagtttt 19369907  T
Q  427 agtaacattttata 440  Q
    ||| ||||||||||    
T  19369906 agttacattttata 19369893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 327 - 404
Target Start/End: Original strand, 19448452 - 19448529
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | || |||||||||| ||||    
T  19448452 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaa 19448529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 19532624 - 19532547
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | || |||||||||| ||||    
T  19532624 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaa 19532547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 440
Target Start/End: Original strand, 18766921 - 18767034
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 426  Q
    |||| ||||||||||||||||||||||||||||| ||| | ||||||||| | |||| |  | |||||||||||||||    ||||||||||| || ||     
T  18766921 aacacttgaaaattgtaactaaatcaagaaaaatattattaattaaattttgcaacactcaaacaattgttaggtaaagtacgtgttactaaagagtttt 18767020  T
Q  427 agtaacattttata 440  Q
    ||| ||||||||||    
T  18767021 agttacattttata 18767034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 419
Target Start/End: Complemental strand, 19371376 - 19371273
Alignment:
Q  316 tgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgtta 414  Q
    ||||||| | |||||||| ||||||||||||||||||| || ||||||||||  ||| || | ||||||||||| ||| |||||||||||   |||||||    
T  19371376 tgagatttagtaacaattcaaaattgtaactaaatcaaaaataaatgttactatttagatcttgtaacatttga-caaatgttaggtaaagactgtgtta 19371278  T
Q  415 ctaaa 419  Q
    |||||    
T  19371277 ctaaa 19371273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 7292813 - 7292885
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatt 375  Q
    ||||||||||| ||||| ||| ||||||| ||||||||||| ||| ||||| | ||||||||||| ||||||||    
T  7292813 cactacaacataattgacatttaataacacttgaaaattgttactgaatcatg-aaaatgttactaattaaatt 7292885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 440
Target Start/End: Original strand, 6223434 - 6223518
Alignment:
Q  356 aaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    |||| |||||| ||||||||||||||||||||   |||||||||||||| |  ||||||||||| || || ||| ||| ||||||    
T  6223434 aaaacgttactgattaaatttagtaacatttgtaaaattgttaggtaaagcgcgtgttactaaagagttttagttacactttata 6223518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 19369846 - 19369769
Alignment:
Q  445 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 520  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  19369846 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 19369769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 520
Target Start/End: Original strand, 19448612 - 19448689
Alignment:
Q  445 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 520  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  19448612 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 19448689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 19532464 - 19532387
Alignment:
Q  445 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 520  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  19532464 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 19532387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 567
Target Start/End: Original strand, 31347854 - 31347922
Alignment:
Q  498 aaaagttgtaaaaagtgtcgcaaggtcgtttagattaaaaattgagaatttgccaaatttgtctctgctt 567  Q
    ||||||||||||||||||| ||| ||||| |||| |||||||||||||| | ||| ||||| || |||||    
T  31347854 aaaagttgtaaaaagtgtc-caaagtcgtctagactaaaaattgagaatctaccacatttgcctttgctt 31347922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 44134843 - 44134944
Alignment:
Q  17 caaacaacatgatcttttcgcaccaagcaatggggatgccgacaacctctaggctctaaccacacacttctcatcttacatacctagagctcttcttggg 116  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44134843 caaacaacatgatcttttcgcaccaagcaatggggatgccgaaaacctctaggctctaaccacacacttttcatcttacatacctagagctcttcttggg 44134942  T
Q  117 ac 118  Q
    ||    
T  44134943 ac 44134944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 302 - 440
Target Start/End: Original strand, 12189931 - 12190069
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||| ||||||| | |  ||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||    
T  12189931 cactacaacataattgagaattagaaacaattaaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggt 12190030  T
Q  402 aaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    ||| |  ||||||||||| || || |||||  |||||||    
T  12190031 aaagcccgtgttactaaagagttttagtaattttttata 12190069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 5911787 - 5911683
Alignment:
Q  300 ctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttag 399  Q
    |||||||||||||||||  |||  | ||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  5911787 ctcactacaacatgattatgatatagtaacacttgaaaattttaactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttag 5911688  T
Q  400 gtaaa 404  Q
    |||||    
T  5911687 gtaaa 5911683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 343 - 440
Target Start/End: Original strand, 3399642 - 3399739
Alignment:
Q  343 aactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||  | |||||||||| |||||| |||||| ||||||    
T  3399642 aactaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaaatctatgttactaaatagcttcggtaacactttata 3399739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 302 - 404
Target Start/End: Original strand, 28636882 - 28636984
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||| ||| ||||  | ||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||  |||||||||||    
T  28636882 cactacaacataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggt 28636981  T
Q  402 aaa 404  Q
    |||    
T  28636982 aaa 28636984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 326 - 419
Target Start/End: Original strand, 16222781 - 16222874
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaa 419  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||  |||||||||||||| |  |||||||||||    
T  16222781 taacatttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcccgtgttactaaa 16222874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 403
Target Start/End: Original strand, 897429 - 897535
Alignment:
Q  297 tatctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgt 396  Q
    |||||||||||||||| ||| ||||  | | ||| ||||||||||| ||||||| |||||||||||| || |||||||||||||||| |||| |||||||    
T  897429 tatctcactacaacataattaagatatagttacagttgaaaattgttactaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgt 897528  T
Q  397 taggtaa 403  Q
    |||||||    
T  897529 taggtaa 897535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 51758756 - 51758870
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||| | || ||||| ||||||||| || || |||||||| || ||    
T  51758756 taacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggtaaagctcgtattactaaagagttt 51758855  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  51758856 tagttacattttata 51758870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 13208621 - 13208708
Alignment:
Q  332 ttgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaa 419  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||||||| || |||| | |||||||||||||||  |||||||||||    
T  13208621 ttgaaaattgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaaaacccgtgttactaaa 13208708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 15214330 - 15214408
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||| |||||||||| |||||||||||||||||| ||||| |||||||||||||| |||||| |||||||| ||||||    
T  15214330 taacacttgaaaattgcaactaaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgttgggtaaa 15214408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 37097437 - 37097375
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttga 388  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  37097437 taacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacatttga 37097375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 18308151 - 18308265
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||| ||||||||||||||||||||||  |||| | ||| ||||||||   ||||||||||||||| | ||||||||| ||  ||||    
T  18308151 taacatttgaaaattgttactaaatcaagaaaaatgttacagattacaattattaacatttctacaattgttaggtaaagcctgtgttactgaagggctt 18308250  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  18308251 tagttacattttata 18308265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 422
Target Start/End: Original strand, 17112904 - 17113024
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||| ||||| ||  | ||| ||||||||||||| |||||||||||||||||  ||||  |||||||| |||||| |||| |||||||||| |    
T  17112904 cactacaacataattgaaatctagtaataattgaaaattgttactaaatcaagaaaaatagtactagttaaattttgtaacacttgaacaattgttagtt 17113003  T
Q  402 aaaacttgtgttactaaaaag 422  Q
    ||| ||  |||||||| ||||    
T  17113004 aaagctcatgttactataaag 17113024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 342 - 405
Target Start/End: Original strand, 15204613 - 15204676
Alignment:
Q  342 taactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaa 405  Q
    |||||||||||||||||||||| || | |||||||||||||| |||| ||||||||||||||||    
T  15204613 taactaaatcaagaaaaatgttgctaactaaatttagtaacacttgaacaattgttaggtaaaa 15204676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 1843964 - 1844033
Alignment:
Q  335 aaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||||||||||  |  ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  1843964 aaaattgtaactggaataagaaaaatgttactgattgaatttagtaacatttgaacaattgttaggtaaa 1844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 44134949 - 44134998
Alignment:
Q  144 tataaaattttcttgcagtaaattgaagggagctatcatgagttcctgag 193  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  44134949 tataaaactttgttgcagtaaattgaagggagctatcatgagttcctgag 44134998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 333 - 437
Target Start/End: Complemental strand, 39368730 - 39368626
Alignment:
Q  333 tgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaac 432  Q
    |||||| ||| ||||||||||||||||||||||| |||||| ||||| ||||||   ||||||||||| ||| |   || ||||||| ||||||||| ||    
T  39368730 tgaaaaatgttactaaatcaagaaaaatgttactaattaaaattagtcacatttatacaattgttaggcaaagcacatgctactaaagagcttcagttac 39368631  T
Q  433 atttt 437  Q
    |||||    
T  39368630 atttt 39368626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 316 - 433
Target Start/End: Complemental strand, 20427840 - 20427723
Alignment:
Q  316 tgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgtta 414  Q
    ||||||| | |||||||| ||||||||||||||||||| || ||||||||||  ||| || | ||||| ||||| ||| |||||||||||||  ||||||    
T  20427840 tgagatttagtaacaattcaaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacttttga-caaatgttaggtaaaacccgtgtta 20427742  T
Q  415 ctaaaaagcttcagtaaca 433  Q
    ||||| |  ||||||||||    
T  20427741 ctaaataatttcagtaaca 20427723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 15193922 - 15193979
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaaca 383  Q
    ||||| |||||||| | ||| |||||||||||||||||||| |||||||||| |||||    
T  15193922 taacacttgaaaatagcaacgaaatcaagaaaaatgttactaattaaatttattaaca 15193979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 17113134 - 17113187
Alignment:
Q  485 tttatattttttgaaaagttgtaaaaagtgtcgcaaggtcgtttagattaaaaa 538  Q
    |||||| ||| ||||||||||||||||||||||||| || || |||| ||||||    
T  17113134 tttataatttgtgaaaagttgtaaaaagtgtcgcaaagttgtctagactaaaaa 17113187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 302 - 424
Target Start/End: Complemental strand, 9354510 - 9354388
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  9354510 cactacaacatgattgagatttagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggt 9354411  T
Q  402 aaaacttgtgttactaaaaagct 424  Q
    ||| |   |||||||||||||||    
T  9354410 aaagcccatgttactaaaaagct 9354388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 302 - 404
Target Start/End: Complemental strand, 9333682 - 9333580
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    |||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9333682 cactacaacatgattgagattttgtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggt 9333583  T
Q  402 aaa 404  Q
    |||    
T  9333582 aaa 9333580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 302 - 404
Target Start/End: Complemental strand, 12042298 - 12042196
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||| ||| |||| || ||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  12042298 cactacaacataattaagatccagtaatatttgaaaattgtaactaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggt 12042199  T
Q  402 aaa 404  Q
    |||    
T  12042198 aaa 12042196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 17037546 - 17037660
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    ||||||||||| || ||    
T  17037546 taacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcagtgttactaaagagttt 17037645  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  17037646 tagttacattttata 17037660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 326 - 440
Target Start/End: Complemental strand, 5079161 - 5079047
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||    
T  5079161 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 5079062  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  5079061 tagttacattttata 5079047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 302 - 439
Target Start/End: Original strand, 30786246 - 30786383
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||| ||| ||||  | ||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||  |||||||||||    
T  30786246 cactacaacataattaagatctagtaacacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggt 30786345  T
Q  402 aaaacttgtgttactaaaaagcttcagtaacattttat 439  Q
    |||     ||||||||||||| || ||| |||||||||    
T  30786346 aaatgccttgttactaaaaagatttagtcacattttat 30786383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 18191970 - 18191886
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacattt 386  Q
    |||||||| || ||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  18191970 cactacaaaataattgagatttagtaacaattgaaaattgtaactaaattaagaaaaatgttactaattaaatttagtaacattt 18191886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 338 - 440
Target Start/End: Complemental strand, 40402094 - 40401992
Alignment:
Q  338 attgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacatttt 437  Q
    ||||| ||||||| ||||||||||||||| |||||||||||| || ||||| |||||||||||||||   |||||| |||||||||||||| ||||||||    
T  40402094 attgtgactaaataaagaaaaatgttactaattaaatttagttacgtttgaacaattgttaggtaaagtctgtgttgctaaaaagcttcagcaacatttt 40401995  T
Q  438 ata 440  Q
    |||    
T  40401994 ata 40401992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 352 - 440
Target Start/End: Original strand, 37233061 - 37233149
Alignment:
Q  352 aagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||| |    |||||||||||||| |||||||||||||||||    
T  37233061 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaacattttata 37233149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 7410827 - 7410941
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| || ||||||||||||||||||| |||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||    
T  7410827 taacatttcaaaattgtaactaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 7410926  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  7410927 tagttacattttata 7410941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 404
Target Start/End: Complemental strand, 31069059 - 31068982
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  31069059 taacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttaggtaaa 31068982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 300 - 402
Target Start/End: Original strand, 10869415 - 10869516
Alignment:
Q  300 ctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttag 399  Q
    ||||||||||||| ||||||||  |   |||||| ||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  10869415 ctcactacaacataattgagatctagatacaattaaaaattgta-ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttag 10869513  T
Q  400 gta 402  Q
    |||    
T  10869514 gta 10869516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 440
Target Start/End: Original strand, 23679445 - 23679558
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 426  Q
    |||| ||||||||||||||||||||||||||||||||| | ||||||||| | |||||| || ||||| |||| ||||  | ||||||||||| || ||     
T  23679445 aacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagtttt 23679544  T
Q  427 agtaacattttata 440  Q
    ||| ||||||||||    
T  23679545 agttacattttata 23679558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 440
Target Start/End: Complemental strand, 23855366 - 23855253
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 426  Q
    |||| ||||||||||||||||||||||||||||||||| | ||||||||| | |||||| || ||||| |||| ||||  | ||||||||||| || ||     
T  23855366 aacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagtttt 23855267  T
Q  427 agtaacattttata 440  Q
    ||| ||||||||||    
T  23855266 agttacattttata 23855253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 19985006 - 19985076
Alignment:
Q  334 gaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    |||||| |||||||||||||| ||||||||||| |||| ||||||||||||||||  ||||||||||||||    
T  19985006 gaaaatggtaactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaa 19985076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 354 - 440
Target Start/End: Original strand, 42076078 - 42076164
Alignment:
Q  354 gaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||| ||||     ||||||||||||||||||| || ||||||||    
T  42076078 gaaaattgttactaattaaatttagtaacatttgaacaattgttagataaagtccatgttactaaaaagcttcaggaatattttata 42076164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 31571007 - 31571090
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacat 384  Q
    |||||||||||| ||||| ||  | ||||| ||||||||||| | |||| |||||||||||||||| |||||| ||||||||||    
T  31571007 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 31571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 12004631 - 12004567
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttact 366  Q
    |||||||||||| ||||| ||| | |||||||||||| || |||||||||||||||||||||||||    
T  12004631 tcactacaacataattgaaatttagtaacaattgaaa-ttctaactaaatcaagaaaaatgttact 12004567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 419
Target Start/End: Complemental strand, 30655302 - 30655180
Alignment:
Q  297 tatctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattg 395  Q
    |||| |||||||||||   ||||||| | ||||| || ||||||||||||||||||| || ||||||||||  ||| || | |||||||||||  || ||    
T  30655302 tatcacactacaacatatatgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttga-taaatg 30655204  T
Q  396 ttaggtaaaacttgtgttactaaa 419  Q
    ||||||||| |  |||||||||||    
T  30655203 ttaggtaaagccggtgttactaaa 30655180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 23616750 - 23616673
Alignment:
Q  445 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 520  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  23616750 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 23616673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 23848147 - 23848070
Alignment:
Q  445 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 520  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  23848147 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 23848070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 31406447 - 31406413
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatg 361  Q
    |||| ||||||||||||||||||||||||||||||    
T  31406447 aacatttgaaaattgtaactaaatcaagaaaaatg 31406413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 17535350 - 17535411
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgtt 363  Q
    ||||||||||  ||||||||  | ||||  ||||||| ||||||||||||||||||||||||    
T  17535350 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 17535411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 546
Target Start/End: Original strand, 42076235 - 42076308
Alignment:
Q  473 aaaaaagtcacttttatattttttgaaaagttgtaaaaagtgtcgcaaggtcgtttagattaaaaattgagaat 546  Q
    ||||| ||||| ||| |||  ||||| ||||||||||||||||||||| || || |||| ||||||||| ||||    
T  42076235 aaaaatgtcacatttttataatttgagaagttgtaaaaagtgtcgcaaagttgtctagactaaaaattgtgaat 42076308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 520
Target Start/End: Complemental strand, 18191821 - 18191757
Alignment:
Q  457 tatgaccagtaacactaaaaaa-gtcacttttatattttttgaaaagttgtaaaaagtgtcgcaa 520  Q
    |||| ||||||||||||||||| || || | |||| ||||||||||||| || ||||||||||||    
T  18191821 tatggccagtaacactaaaaaatgttacatatataatttttgaaaagttctagaaagtgtcgcaa 18191757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 302 - 439
Target Start/End: Complemental strand, 29668038 - 29667899
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaa--gaaaaatgttacttattaaatttagtaacatttgagcaattgttag 399  Q
    ||||||||||| ||||||||    |||||||||||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  29668038 cactacaacataattgagatcttgtaacaattgaaaattgtaacgaaatcaaaagaaaaatgttactaattaaatttagtaacatttgaacaattgttag 29667939  T
Q  400 gtaaaacttgtgttactaaaaagcttcagtaacattttat 439  Q
    ||||| ||||||||| |||| || || |||||||||||||    
T  29667938 gtaaagcttgtgttattaaagagatttagtaacattttat 29667899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 16734808 - 16734922
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |  |||||||||||  | ||    
T  16734808 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaagtgttt 16734907  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  16734908 tagttacattttata 16734922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 302 - 440
Target Start/End: Original strand, 1942548 - 1942686
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||| ||| |||||   ||||| |||| |||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |||||    
T  1942548 cactacaacataattaagatttggtaacatttgataattgtaactaaatcaagaaaaatattactgataaaatttaataacatttgagcaattgctaggt 1942647  T
Q  402 aaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    ||||| | ||||| |||| | ||| ||| ||||||||||    
T  1942648 aaaacctttgttattaaatatctttagttacattttata 1942686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 15361718 - 15361832
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||| | ||    
T  15361718 taacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttt 15361817  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  15361818 tagttacattttata 15361832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 302 - 428
Target Start/End: Complemental strand, 23264619 - 23264491
Alignment:
Q  302 cactacaacatgattgagattcaataaca--attgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttag 399  Q
    ||||||||||| ||||||||  | ||| |  |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| || ||||||||||    
T  23264619 cactacaacataattgagatctagtaagaatattgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttag 23264520  T
Q  400 gtaaaacttgtgttactaaaaagcttcag 428  Q
    ||||||   ||||||||||| ||||||||    
T  23264519 gtaaaatccgtgttactaaagagcttcag 23264491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 326 - 440
Target Start/End: Complemental strand, 11936864 - 11936750
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||| |||| |  |||||||||||  | ||    
T  11936864 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttt 11936765  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  11936764 tagttacattttata 11936750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 12591836 - 12591950
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||  | || ||||||||||||||| |  ||||||||||| || ||    
T  12591836 taacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaagagttt 12591935  T
Q  426 cagtaacattttata 440  Q
     ||| ||| ||||||    
T  12591936 tagttacaatttata 12591950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 11948835 - 11948730
Alignment:
Q  335 aaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacat 434  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||| |||| |  |||||||||||  | || ||| ||||    
T  11948835 aaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacat 11948736  T
Q  435 tttata 440  Q
    ||||||    
T  11948735 tttata 11948730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 314 - 440
Target Start/End: Original strand, 34374816 - 34374944
Alignment:
Q  314 attgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagc--aattgttaggtaaaacttgtg 411  Q
    ||||||||| | |||||||| |||| ||||| ||||||||||||||||||||| |||| |||| ||||||||||| |  |||||||||| ||||  ||||    
T  34374816 attgagattaagtaacaattaaaaaatgtaattaaatcaagaaaaatgttactaattatattttgtaacatttgaacaaaattgttaggcaaaatctgtg 34374915  T
Q  412 ttactaaaaagcttcagtaacattttata 440  Q
    |||||||| || || ||||| ||||||||    
T  34374916 ttactaaagagtttgagtaatattttata 34374944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 440
Target Start/End: Complemental strand, 14669442 - 14669329
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 426  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | ||  ||||||||||||||    ||||||||||| || ||     
T  14669442 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaagagtttt 14669343  T
Q  427 agtaacattttata 440  Q
    ||| ||||||||||    
T  14669342 agttacattttata 14669329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 9631278 - 9631178
Alignment:
Q  300 ctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttag 399  Q
    |||| |||||||| ||||||||| | ||||| ||||||| | | ||||||||||||| || |||||| | ||||||||||||||||||| ||||||||||    
T  9631278 ctcattacaacataattgagatttagtaacacttgaaaactattactaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttag 9631179  T
Q  400 g 400  Q
    |    
T  9631178 g 9631178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 420
Target Start/End: Original strand, 2941017 - 2941103
Alignment:
Q  335 aaaattgtaactaaatcaagaaaa-atgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaa 420  Q
    ||||||||||| ||||||| |||| |||||||| ||||  ||||||||||||||||||| |||||||||||  ||||||||||||||    
T  2941017 aaaattgtaacaaaatcaaaaaaagatgttactaattatgtttagtaacatttgagcaaatgttaggtaaagtttgtgttactaaaa 2941103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 15690441 - 15690519
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |  | |||||||||| ||||    
T  15690441 taacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtgacactcaaacaattgttagctaaa 15690519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 404
Target Start/End: Complemental strand, 23904469 - 23904371
Alignment:
Q  306 acaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||||| ||||||||  | ||||| ||||||||||  ||||||| |||||||| |||||| | | ||||||||||||||||| |||||||||||||||    
T  23904469 acaacataattgagatctagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaaa 23904371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 301 - 404
Target Start/End: Complemental strand, 4485687 - 4485584
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 400  Q
    |||||||||||| ||| ||||  | || || ||||||| || |||||||||||| |||||| |||| |||||||||||||| ||||||  ||||||||||    
T  4485687 tcactacaacataattaagatctagtatcagttgaaaaatgcaactaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttagg 4485588  T
Q  401 taaa 404  Q
    ||||    
T  4485587 taaa 4485584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 6684097 - 6684174
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||| || |||||||||||| ||||||||||||||||||| |||||||||||||||| | || | |||||||||||||    
T  6684097 taacacttaaaaattgtaacttaatcaagaaaaatgttactaattaaatttagtaacactcgaac-attgttaggtaaa 6684174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 17719819 - 17719742
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| ||| | |||| | || |||||||||| ||||    
T  17719819 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaatttttgcaacactcgaacaattgttagataaa 17719742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 6673737 - 6673659
Alignment:
Q  304 ctacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaaca 383  Q
    ||||||||| ||| ||||| | ||||| ||||||| |||||||||||||||||||||||||| ||  |||||||||||||    
T  6673737 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttac-taaaaaatttagtaaca 6673659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 407
Target Start/End: Complemental strand, 10935860 - 10935797
Alignment:
Q  344 actaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaact 407  Q
    ||||||||| ||||||||||||| |||| ||  |||||||||||| ||||||||||||||||||    
T  10935860 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaact 10935797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 30481315 - 30481216
Alignment:
Q  336 aaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacatt 435  Q
    ||||||| |||||||||||||||||||| || ||||||| |||||||| |||| ||| | |||| ||||  |  |||||||||| ||||||| |||||||    
T  30481315 aaattgttactaaatcaagaaaaatgttgctaattaaatctagtaacaattgaacaaattttagataaagatcatgttactaaagagcttcaataacatt 30481216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 419
Target Start/End: Complemental strand, 7913524 - 7913406
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttag 399  Q
    |||||||||||||  ||||||| | ||||| || ||||||||||||||||||| || ||||||||||  ||| || | |||||||||||| || | ||||    
T  7913524 tcactacaacatgtatgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttactctttagatcttgtaacatttgag-aaatattag 7913426  T
Q  400 gtaaaacttgtgttactaaa 419  Q
    |||||   ||||||||||||    
T  7913425 gtaaagtctgtgttactaaa 7913406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 437
Target Start/End: Complemental strand, 27970014 - 27969903
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| |||||||||||||| ||| ||||||| ||||||||  || ||||||| ||||||| | ||| |||||||||||   | |||||||||||  |||    
T  27970014 taacatttgaaaattgtaaccaaagcaagaaatatgttactatttcaatttagcaacatttcaacaaatgttaggtaaagtctatgttactaaaagactt 27969915  T
Q  426 cagtaacatttt 437  Q
    ||  ||||||||    
T  27969914 caacaacatttt 27969903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 419
Target Start/End: Complemental strand, 6346946 - 6346862
Alignment:
Q  335 aaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaa 419  Q
    ||||||||||||||||||| || ||||||||||  |||||||| |||||||||||  || ||||||||||| | | ||||||||||    
T  6346946 aaaattgtaactaaatcaaaaataaatgttactatttaaattttgtaacatttga-taaatgttaggtaaagcctatgttactaaa 6346862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 4591153 - 4591229
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggta 402  Q
    ||||| ||||||||| | ||||||||||||||||||||||  |||||| | | |||| ||||  |||||||||||||    
T  4591153 taacatttgaaaattattactaaatcaagaaaaatgttaccgattaaaatcaataacctttgtacaattgttaggta 4591229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 405
Target Start/End: Original strand, 9236022 - 9236111
Alignment:
Q  316 tgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaa 405  Q
    ||||||| | ||||| || ||||| ||||||||||||| || |||| |||||  |||||||| ||||||||||| ||| ||||||||||||    
T  9236022 tgagatttagtaacacttcaaaatcgtaactaaatcaaaaacaaatattactatttaaattttgtaacatttga-caaatgttaggtaaaa 9236111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 17719659 - 17719582
Alignment:
Q  445 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 520  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  17719659 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 17719582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 307 - 440
Target Start/End: Original strand, 11017441 - 11017574
Alignment:
Q  307 caacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaac 406  Q
    |||||| ||||||||  | |||||||||||||  || ||||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||      
T  11017441 caacataattgagatctagtaacaattgaaaaccgttactaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagt 11017540  T
Q  407 ttgtgttactaaaaagcttcagtaacattttata 440  Q
      ||||||||||||||||||||||||| ||||||    
T  11017541 ccgtgttactaaaaagcttcagtaacactttata 11017574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 15513670 - 15513784
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    |||||||| |||||||||| |||||||||||||||||||||  |||||||| |||||| |||| ||||||||||||||| || |||||||||||||| ||    
T  15513670 taacaattaaaaattgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaaaagatt 15513769  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  15513770 tagttacattttata 15513784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 296 - 440
Target Start/End: Original strand, 41573366 - 41573510
Alignment:
Q  296 atatctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattg 395  Q
    |||| |||||||||||  ||||||||| | ||||| |  |||| ||||||||||||||||||||||||||| |||||||||||||||| || | ||||||    
T  41573366 atatatcactacaacaaaattgagatttagtaacattcaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattg 41573465  T
Q  396 ttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    ||||||||| |  |||||||||||   ||||| ||||||||||||    
T  41573466 ttaggtaaaccccgtgttactaaattacttcaataacattttata 41573510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 302 - 440
Target Start/End: Original strand, 24479131 - 24479269
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||| ||||| ||||||||  | ||||| ||||||||| | |||||||||||| || ||||||| ||||||||||||||||||||| ||||| ||||||    
T  24479131 cactataacataattgagatatagtaacacttgaaaattattactaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggt 24479230  T
Q  402 aaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    ||| || ||||||||||| ||||| ||| | ||||||||    
T  24479231 aaagctcgtgttactaaagagctttagttatattttata 24479269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 30267006 - 30267120
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||  ||| ||||||||||||||| |  ||||||| ||| || ||    
T  30267006 taacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagagttt 30267105  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  30267106 tagttacattttata 30267120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 326 - 440
Target Start/End: Complemental strand, 31342813 - 31342699
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||| |||| |  |||||||||||  | ||    
T  31342813 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttt 31342714  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  31342713 tagttacattttata 31342699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 44920961 - 44921074
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||  | | ||||||||||||||| || ||||||||||| || ||    
T  44920961 taacacttgaaaattgtaactaaatcaa-aaaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagctcgtgttactaaagagttt 44921059  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  44921060 tagttacattttata 44921074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 332 - 404
Target Start/End: Original strand, 7718194 - 7718266
Alignment:
Q  332 ttgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||  ||| |||||||||| ||||    
T  7718194 ttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaa 7718266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 40016594 - 40016672
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||| ||||||||| | | ||||||||| ||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  40016594 taacacttgaaaattattattaaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaa 40016672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 303 - 437
Target Start/End: Original strand, 7702409 - 7702543
Alignment:
Q  303 actacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggta 402  Q
    |||||||||| ||||| ||  | |||||  |||||||| | ||||||| || |||||||||| | |||||| |||||||||||||  |||||||||||||    
T  7702409 actacaacataattgacatctagtaacacatgaaaattattactaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggta 7702508  T
Q  403 aaacttgtgttactaaaaagcttcagtaacatttt 437  Q
    || |   | |||||||| ||||| ||| |||||||    
T  7702509 aagcccatattactaaagagctttagttacatttt 7702543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 26734732 - 26734829
Alignment:
Q  304 ctacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaa 403  Q
    ||||| ||| ||||||||  ||||||| |||||||||||   ||||||||||||||  ||| | ||||||||||| || ||||||  |||||||||||||    
T  26734732 ctacagcataattgagatataataacatttgaaaattgt---taaatcaagaaaaaacttattaattaaatttagcaatatttgaataattgttaggtaa 26734828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 438
Target Start/End: Original strand, 22966502 - 22966640
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaa--aaatgttacttattaaatttagtaacatttgagcaattgttag 399  Q
    |||||||| || ||||||||| | ||||| ||||||| | | ||||||| || ||  |||| ||||| || ||||||||| |||||| | ||||||||||    
T  22966502 cactacaatataattgagatttagtaacacttgaaaactattactaaataaaaaataaaatattactaatgaaatttagttacatttaaacaattgttag 22966601  T
Q  400 gtaaaacttgtgttactaaaaagcttcagtaacatttta 438  Q
    ||||| |   |||||||||| | ||| ||| ||||||||    
T  22966602 gtaaagcccctgttactaaagacctttagttacatttta 22966640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 437
Target Start/End: Complemental strand, 15540421 - 15540285
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaa-atgttacttattaaatttagtaacatttgagcaattgttag 399  Q
    ||||||| |||| |||||| || | ||||| ||||||| | | |||||||||  |||| |||||||| |||| || ||||||||||| | |||||| |||    
T  15540421 tcactacgacataattgagctttagtaacatttgaaaagtattactaaatcacaaaaatatgttactaattatatctagtaacatttaa-caattgatag 15540323  T
Q  400 gtaaaacttgtgttactaaaaagcttcagtaacatttt 437  Q
    |||||  ||||| |||||||  |  |||||||||||||    
T  15540322 gtaaagtttgtggtactaaacggtatcagtaacatttt 15540285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 27151319 - 27151259
Alignment:
Q  336 aaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgt 396  Q
    ||||||| ||||||||||||||||||| ||| |||||| ||||| ||| |||  |||||||    
T  27151319 aaattgttactaaatcaagaaaaatgtcactaattaaaattagtgacacttgtacaattgt 27151259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 301 - 403
Target Start/End: Complemental strand, 24559117 - 24559015
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 400  Q
    |||||| ||||| ||||||||| | |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||    
T  24559117 tcactagaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttagg 24559018  T
Q  401 taa 403  Q
    |||    
T  24559017 taa 24559015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 301 - 404
Target Start/End: Complemental strand, 4881191 - 4881088
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 400  Q
    |||||||||||| ||||| || || ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||   ||||||||||    
T  4881191 tcactacaacataattgacatccagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttagg 4881092  T
Q  401 taaa 404  Q
    ||||    
T  4881091 taaa 4881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 43600270 - 43600384
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || | |||| ||||||||||||||| |  |||||||||||  | ||    
T  43600270 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 43600369  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  43600370 tagttacattttata 43600384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 326 - 440
Target Start/End: Complemental strand, 47066131 - 47066017
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||  ||| ||||||||||||||| |  ||||||| ||| || ||    
T  47066131 taacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagagttt 47066032  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  47066031 tagttacattttata 47066017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 301 - 440
Target Start/End: Complemental strand, 37751111 - 37750973
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 400  Q
    |||||||||||| ||||| || || |||||  |||||||||| |||||||||| |||||||||||| |||||| | ||||||||||| |||||||||||     
T  37751111 tcactacaacataattgacatccagtaacatatgaaaattgtcactaaatcaa-aaaaatgttactaattaaaatcagtaacatttgcgcaattgttaga 37751013  T
Q  401 taaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    |||| |   ||||||||| |||||| ||| ||||||||||    
T  37751012 taaagccaatgttactaagaagctttagttacattttata 37750973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 326 - 438
Target Start/End: Complemental strand, 4904237 - 4904125
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| || |||||||| ||||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||| |   ||||||||||  ||||    
T  4904237 taacacttaaaaattgttactaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaaagcacttgttactaaagtgctt 4904138  T
Q  426 cagtaacatttta 438  Q
     ||| ||||||||    
T  4904137 tagttacatttta 4904125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 48464047 - 48464118
Alignment:
Q  330 aattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||||| ||||||| || |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  48464047 aattgaaaattgttactaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 439
Target Start/End: Original strand, 53300354 - 53300467
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||  | | ||||||||||||||| |  ||||||| ||| || ||    
T  53300354 taacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggtaaagcccgtgttaccaaagagttt 53300453  T
Q  426 cagtaacattttat 439  Q
     ||| |||||||||    
T  53300454 tagttacattttat 53300467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 1685048 - 1684971
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | || |||||||||| ||||    
T  1685048 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaa 1684971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 21539355 - 21539295
Alignment:
Q  339 ttgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttag 399  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||    
T  21539355 ttgtaactaaatcaaggaaaatgttactgattaaatttagtaacatttaaacaattgttag 21539295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 21317485 - 21317554
Alignment:
Q  370 taaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttat 439  Q
    ||||||||||||||||| | |||||||||||||||   ||||||||||||| |||||| |||||||||||    
T  21317485 taaatttagtaacatttcaacaattgttaggtaaaggctgtgttactaaaatgcttcactaacattttat 21317554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 26075373 - 26075290
Alignment:
Q  300 ctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaaca 383  Q
    |||| |||||||| ||||| ||  ||||||||||||||||||| |||| ||||||||||  |||||| | ||||||||||||||    
T  26075373 ctcattacaacataattgaaatctaataacaattgaaaattgttactagatcaagaaaatggttactaagtaaatttagtaaca 26075290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 440
Target Start/End: Original strand, 48465443 - 48465490
Alignment:
Q  393 ttgttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  48465443 ttgttaggtaaaatttgtgttactaaaaagtttcagtaacattttata 48465490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 1152048 - 1152097
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaattt 376  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||||||||    
T  1152048 aacacttgaaaattgtaactaaattaagaaaaatgttactaattaaattt 1152097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 4923755 - 4923690
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttact 366  Q
    |||||||||||| ||| | || || ||||| || |||||||| |||||||||||||||||||||||    
T  4923755 tcactacaacataattaacatccagtaacacttaaaaattgttactaaatcaagaaaaatgttact 4923690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 520
Target Start/End: Original strand, 1152208 - 1152285
Alignment:
Q  445 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 520  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  1152208 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 1152285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 1684888 - 1684811
Alignment:
Q  445 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 520  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  1684888 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 1684811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 419
Target Start/End: Original strand, 2549239 - 2549356
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttagg 400  Q
    |||||||||||   ||||||| | ||||| ||  ||||||||| |||||||| || ||||||||||  |||||| | |||| |||||| ||| |||||||    
T  2549239 cactacaacatatatgagatttagtaacacttctaaattgtaattaaatcaaaaacaaatgttactatttaaatcttgtaatatttga-caaatgttagg 2549337  T
Q  401 taaaacttgtgttactaaa 419  Q
    ||||||  |||||||||||    
T  2549338 taaaacccgtgttactaaa 2549356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 6702 - 6816
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||| | ||    
T  6702 taacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttt 6801  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  6802 tagttacattttata 6816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 326 - 443
Target Start/End: Original strand, 10022127 - 10022244
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    |||||||||||||||||||||||||||  |||||||||||| ||||| ||||||||||  ||| ||||||||||||||| || ||||||||||| |  ||    
T  10022127 taacaattgaaaattgtaactaaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaagctcgtgttactaaagaattt 10022226  T
Q  426 cagtaacattttatatta 443  Q
     ||| |||||||||||||    
T  10022227 tagttacattttatatta 10022244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 324 - 440
Target Start/End: Complemental strand, 26225077 - 26224961
Alignment:
Q  324 aataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagc 423  Q
    ||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| ||||| ||||||||| |  ||||||||||| ||     
T  26225077 aataacacttgaaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaaagccggtgttactaaagagt 26224978  T
Q  424 ttcagtaacattttata 440  Q
    || |||  |||||||||    
T  26224977 tttagtttcattttata 26224961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 302 - 440
Target Start/End: Complemental strand, 26608660 - 26608522
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||| ||||| ||  | ||||| ||||||||||| |  |||||||||||||||||||| ||||||||||||||||||||| |||||||||| |    
T  26608660 cactacaacataattgacatctagtaacatttgaaaattgttatgaaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagat 26608561  T
Q  402 aaaacttgtgttactaaaaagcttcagtaacattttata 440  Q
    ||| |   |||||||||| ||||| |||  |||||||||    
T  26608560 aaagcccatgttactaaagagctttagttgcattttata 26608522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 30089738 - 30089852
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||| |   |||||||||| |||||    
T  30089738 taacacttgaaaactgttactaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaaagcccatgttactaaagagctt 30089837  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  30089838 tagttacattttata 30089852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 332 - 419
Target Start/End: Complemental strand, 26205506 - 26205419
Alignment:
Q  332 ttgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaa 419  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||  ||||| |||||||| || |||||||||||    
T  26205506 ttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggtaaagctggtgttactaaa 26205419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 404
Target Start/End: Complemental strand, 4685500 - 4685422
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||| |||| |||||||||||||||    
T  4685500 taacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaa 4685422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 440
Target Start/End: Complemental strand, 26621188 - 26621074
Alignment:
Q  326 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 425  Q
    ||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||| | |||||||||| |||||    |||||||||| |||||    
T  26621188 taacacttgaaaattgttactaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttagataaaagccatgttactaaagagctt 26621089  T
Q  426 cagtaacattttata 440  Q
     ||| ||||||||||    
T  26621088 tagttacattttata 26621074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 334 - 440
Target Start/End: Complemental strand, 20277449 - 20277343
Alignment:
Q  334 gaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaaca 433  Q
    |||||||||||||||||||| |||||| ||| | ||||||||||||||||||| | ||||||||||||||| |   |||||||||| ||||| ||| |||    
T  20277449 gaaaattgtaactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaagagctttagttaca 20277350  T
Q  434 ttttata 440  Q
    || ||||    
T  20277349 ttatata 20277343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 302 - 436
Target Start/End: Complemental strand, 26619223 - 26619091
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 401  Q
    ||||||||||| ||||| ||  | ||||| |||||| |||| ||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||    
T  26619223 cactacaacataattgacatctagtaacacttgaaa-ttgttactaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattg-taggt 26619126  T
Q  402 aaaacttgtgttactaaaaagcttcagtaacattt 436  Q
    ||| | | |||||||||| | ||| ||| ||||||    
T  26619125 aaatcctatgttactaaagaactttagttacattt 26619091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 9242580 - 9242503
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||| |||||||||| ||||    
T  9242580 aacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaa 9242503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 436
Target Start/End: Original strand, 3234306 - 3234441
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaa-ttgttagg 400  Q
    ||||||| ||| ||| ||||| | ||||| ||||||| ||||||||||| || ||||||| |||| | | ||||||||||||||||| ||| || |||||    
T  3234306 cactacagcataattaagatttagtaacagttgaaaaatgtaactaaataaaaaaaaatggtactaaattaatttagtaacatttgaccaatttattagg 3234405  T
Q  401 taaaacttgtgttactaaaaagcttcagtaacattt 436  Q
    ||||    ||||||||||| ||||||||||||||||    
T  3234406 taaagtccgtgttactaaatagcttcagtaacattt 3234441  T

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Target: chr7; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 16086501 - 16086604
Alignment:
Q  337 aattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattt 436  Q
    |||||| | |||||||  |||| ||||||| |||||||||| ||||||||||  |||||||||||||| ||  ||||||| || ||||||||||||||||    
T  16086501 aattgttattaaatcagaaaaactgttactaattaaatttaataacatttgaataattgttaggtaaagctcatgttacttaatagcttcagtaacattt 16086600  T
Q  437 tata 440  Q
    ||||    
T  16086601 tata 16086604  T

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Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 327 - 405
Target Start/End: Original strand, 16170275 - 16170353
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaa 405  Q
    |||| |||||||||||||| ||||||  |||| ||||||| |||||||||||||||| || | ||||||||||||||||    
T  16170275 aacacttgaaaattgtaaccaaatcacaaaaagtgttactaattaaatttagtaacacttaaacaattgttaggtaaaa 16170353  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 3374325 - 3374374
Alignment:
Q  347 aaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgt 396  Q
    |||||||||||||||||| | |||||||| |||||||||||| |||||||    
T  3374325 aaatcaagaaaaatgttattgattaaattaagtaacatttgaacaattgt 3374374  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 27135958 - 27136039
Alignment:
Q  352 aagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaaca 433  Q
    ||||||||||||| | |||| || || |||||||||| |||||||||| |||| | |||||||||||| || ||| ||||||    
T  27135958 aagaaaaatgttattgattatatctaataacatttgaacaattgttagataaagcctgtgttactaaagagtttcggtaaca 27136039  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 8241611 - 8241679
Alignment:
Q  336 aaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaa 405  Q
    ||||||||||||||| ||||||| ||||||| ||| |||||| ||| |||||| || ||||||| |||||    
T  8241611 aaattgtaactaaatgaagaaaa-tgttactgattgaatttaataatatttgaacagttgttagataaaa 8241679  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 14803181 - 14803120
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgtt 363  Q
    ||||||||||  ||||||||  | ||||  ||||||| ||||||||||||||||||||||||    
T  14803181 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 14803120  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 15250175 - 15250114
Alignment:
Q  302 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgtt 363  Q
    ||||||||||  ||||||||  | ||||  ||||||| ||||||||||||||||||||||||    
T  15250175 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 15250114  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 26701083 - 26701147
Alignment:
Q  375 ttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttat 439  Q
    ||||||||| |||  ||||||||||||||| |  ||||||||||| | ||||||||||| |||||    
T  26701083 ttagtaacagttggccaattgttaggtaaagcccgtgttactaaataacttcagtaacactttat 26701147  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 419
Target Start/End: Original strand, 28312669 - 28312772
Alignment:
Q  316 tgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgtta 414  Q
    ||||||| | |||||||| ||||||| ||||||||||| || ||||||||||  ||| || | ||||||||| | ||| ||||||||||| |  ||||||    
T  28312669 tgagatttagtaacaattcaaaattgcaactaaatcaaaaacaaatgttactatttagatcttgtaacatttca-caaatgttaggtaaagcccgtgtta 28312767  T
Q  415 ctaaa 419  Q
    |||||    
T  28312768 ctaaa 28312772  T

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Target: scaffold0684 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 843 - 766
Alignment:
Q  327 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||||| | |||| | || |||||||||| ||||    
T  843 aacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaa 766  T

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Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 332 - 404
Target Start/End: Complemental strand, 40789 - 40717
Alignment:
Q  332 ttgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 404  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| | |||| | || |||||||||| ||||    
T  40789 ttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaa 40717  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 446397 - 446306
Alignment:
Q  309 acatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 400  Q
    |||| ||||||||  | ||||||| ||| |||||||||||||||   ||| ||||||  ||||||||| ||||||||||| |||||||||||    
T  446397 acataattgagatctagtaacaatcgaagattgtaactaaatcatacaaattgttaccaattaaatttggtaacatttgaacaattgttagg 446306  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 435
Target Start/End: Original strand, 8723 - 8855
Alignment:
Q  301 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 400  Q
    |||||||||||| ||| ||||| | ||||| ||||||| ||||||||||| ||  ||||||||||| | | ||| ||||||||||| | ||||| || ||    
T  8723 tcactacaacataattaagatttagtaacagttgaaaaatgtaactaaat-aaacaaaatgttactaaatgaatatagtaacatttaaccaattatttgg 8821  T
Q  401 taaaacttgtgttactaaaaagcttcagtaacatt 435  Q
      ||||   |||||||||| |||||||||||||||    
T  8822 -caaacccctgttactaaatagcttcagtaacatt 8855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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