View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9046_low_8 (Length: 502)

Name: NF9046_low_8
Description: NF9046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9046_low_8
NF9046_low_8
[»] chr3 (12 HSPs)
chr3 (186-486)||(33093601-33093903)
chr3 (9-192)||(33093921-33094104)
chr3 (255-372)||(33396702-33396819)
chr3 (254-372)||(36875764-36875882)
chr3 (254-372)||(37580608-37580726)
chr3 (329-372)||(33708805-33708848)
chr3 (95-166)||(37587574-37587645)
chr3 (84-166)||(37580840-37580922)
chr3 (403-486)||(33708685-33708768)
chr3 (331-370)||(36810812-36810851)
chr3 (403-475)||(33714531-33714603)
chr3 (74-166)||(36811047-36811139)
[»] chr2 (1 HSPs)
chr2 (102-166)||(32785792-32785856)
[»] chr7 (1 HSPs)
chr7 (100-153)||(18724389-18724442)
[»] chr8 (1 HSPs)
chr8 (100-166)||(18315293-18315359)
[»] chr5 (1 HSPs)
chr5 (100-166)||(41901555-41901621)
[»] chr1 (2 HSPs)
chr1 (338-372)||(52082861-52082895)
chr1 (339-372)||(52093064-52093097)
[»] chr4 (1 HSPs)
chr4 (100-165)||(8184051-8184116)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 186 - 486
Target Start/End: Complemental strand, 33093903 - 33093601
Alignment:
Q  186 aaggtagctccaaatatcgaacatcaccccatctccttaacaca--accaacatctttaaatatgccggggcaagagttcaaatcaagaagctgcagatt 283  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||    
T  33093903 aaggtaactccaaatatcgaatatcaccccatctccttaacacattaccaatatctttagatatgccggggcaagagttcaaatcaagaagctgcaaatt 33093804  T
Q  284 gggaaacatgaaagcaaaaatatcgatgtttacatttagtagttgtgaattgttagccaaatggagagacttcacttgacggtatacaaacggttccccc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33093803 gggaaacatgaaagcaaaaatatcgatgtttacatttagtagttgtgaattgttagccaaatggagagacttcacttgacggtatacaaacggttccccc 33093704  T
Q  384 aacgggccaattccaatgcttgttgactccattctgatatcactaagcaaaggacaatgcctagggaatgcaaacaaggttacattggtgagcatgttac 483  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33093703 aatgggccaattccaatgcttgttgactccattctgatatcactaagcaaaggacaatgcctagggaatgcaaacaaggttacattggtgagcatgttac 33093604  T
Q  484 aac 486  Q
    |||    
T  33093603 aac 33093601  T

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Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 33094104 - 33093921
Alignment:
Q  9 ggtgtttgcagtttgctaccactagcctaactccgtcctccgtgatatcacggcaattttccacatcaagttgttgaagctgaggacaaaactttgagat 108  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33094104 ggtgtttgcagtttactaccactagcctaactccgtcctccgtgatatcacggcaattttccacatcaagttgttgaagctgaggacaaaactttgagat 33094005  T
Q  109 cgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttgctggatttgaagttgatccaaggtag 192  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33094004 cgcataaagtacttcatcatcaactcatgactttgacaagttcaaaacctctagtttgctggatttgaagttgatccaaggtag 33093921  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 372
Target Start/End: Original strand, 33396702 - 33396819
Alignment:
Q  255 caagagttcaaatcaagaagctgcagattgggaaacatgaaagcaaaaatatcgatgtttacatttagtagttgtgaattgttagccaaatggagagact 354  Q
    |||||| |||||||||||||||||| ||| |||||||| |||| ||| ||   ||||| | ||| | | | ||||||||||| |||||||||||||||||    
T  33396702 caagagctcaaatcaagaagctgcatattaggaaacataaaagaaaacatggtgatgtcttcatcttgcaattgtgaattgtaagccaaatggagagact 33396801  T
Q  355 tcacttgacggtatacaa 372  Q
    |||||||| |||||||||    
T  33396802 tcacttgatggtatacaa 33396819  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 372
Target Start/End: Original strand, 36875764 - 36875882
Alignment:
Q  254 gcaagagttcaaatcaagaagctgcagattgggaaacatgaaagcaaaaatatcgatgtttacatttagtagttgtgaattgttagccaaatggagagac 353  Q
    ||||||| ||||||||||||| ||||  || |||||| | |||||||| || | ||||| | ||| | | |  |||||||||||||||||||||||||||    
T  36875764 gcaagagctcaaatcaagaagttgcatgttaggaaacgtaaaagcaaacatgttgatgtcttcatcttgcaaatgtgaattgttagccaaatggagagac 36875863  T
Q  354 ttcacttgacggtatacaa 372  Q
    |||| |||| |||||||||    
T  36875864 ttcagttgatggtatacaa 36875882  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 254 - 372
Target Start/End: Complemental strand, 37580726 - 37580608
Alignment:
Q  254 gcaagagttcaaatcaagaagctgcagattgggaaacatgaaagcaaaaatatcgatgtttacatttagtagttgtgaattgttagccaaatggagagac 353  Q
    ||||||| ||||||||||||| |||| ||| ||||||| ||||||||| || | ||||| | ||| | | |    |||||||  ||||||||||||||||    
T  37580726 gcaagagctcaaatcaagaagttgcatattaggaaacaggaaagcaaacatgtggatgtcttcatctcgcaaacatgaattggaagccaaatggagagac 37580627  T
Q  354 ttcacttgacggtatacaa 372  Q
    ||||||||| |||||||||    
T  37580626 ttcacttgatggtatacaa 37580608  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 33708848 - 33708805
Alignment:
Q  329 tgaattgttagccaaatggagagacttcacttgacggtatacaa 372  Q
    |||||||| ||||||||||||||||||||||||| |||||||||    
T  33708848 tgaattgtgagccaaatggagagacttcacttgatggtatacaa 33708805  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 37587645 - 37587574
Alignment:
Q  95 caaaactttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttg 166  Q
    |||| ||||||||||||||| | ||||| |||||||| |||||| | |||||||||||| ||||| ||||||    
T  37587645 caaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttg 37587574  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 37580922 - 37580840
Alignment:
Q  84 gaagctgaggacaaaactttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttg 166  Q
    ||||| |||| |||| | |||||||| |||| | ||||| |||||||| |||||| |||||||||||||| ||||| ||||||    
T  37580922 gaagccgagggcaaatcattgagatcacatacaatactttatcatcaattcttgagtttgacaagttcaatacctcgagtttg 37580840  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 486
Target Start/End: Complemental strand, 33708768 - 33708685
Alignment:
Q  403 ttgttgactccattctgatatcactaagcaaaggacaatgcctagggaatgcaaacaaggttacattggtgagcatgttacaac 486  Q
    ||||||||||||||||||| ||| | ||||||||||| | |||| ||| |||||| |||| |  |||||||||| ||| |||||    
T  33708768 ttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtgagcttgtcacaac 33708685  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 370
Target Start/End: Complemental strand, 36810851 - 36810812
Alignment:
Q  331 aattgttagccaaatggagagacttcacttgacggtatac 370  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  36810851 aatttttagccaaatggagagacttcacttgatggtatac 36810812  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 33714603 - 33714531
Alignment:
Q  403 ttgttgactccattctgatatcactaagcaaaggacaatgcctagggaatgcaaacaaggttacattggtgag 475  Q
    ||||||||||||||||||| ||| | ||||||||||| | |||| ||| |||||| |||| |  |||||||||    
T  33714603 ttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtgag 33714531  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 36811139 - 36811047
Alignment:
Q  74 tcaagttgttgaagctgaggacaaaactttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttg 166  Q
    ||||||||| ||||| |||| |||| ||||||||| ||||| ||| ||  || ||||| |||||| |  ||||||||||| ||||| ||||||    
T  36811139 tcaagttgtagaagccgagggcaaatctttgagattgcatacagtgctctattatcaattcttgaatgggacaagttcaacacctccagtttg 36811047  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 32785856 - 32785792
Alignment:
Q  102 ttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttg 166  Q
    |||||||| |||||||| |||||||||||| |||||  | |||||||||||| ||||||||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttg 32785792  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 18724442 - 18724389
Alignment:
Q  100 ctttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaa 153  Q
    ||||||||||||||| ||||||| |||||||| |||||| | ||||||||||||    
T  18724442 ctttgagatcgcatacagtactttatcatcaattcttgagtgtgacaagttcaa 18724389  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 18315359 - 18315293
Alignment:
Q  100 ctttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttg 166  Q
    |||||||||| |||| ||| |||||||||||||| |||  | |||||||||||| ||||| ||||||    
T  18315359 ctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttg 18315293  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 41901621 - 41901555
Alignment:
Q  100 ctttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttg 166  Q
    ||||||||||  ||||||| |||||||||||||| |||  | |||||||||||| ||||| ||||||    
T  41901621 ctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttg 41901555  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 372
Target Start/End: Original strand, 52082861 - 52082895
Alignment:
Q  338 agccaaatggagagacttcacttgacggtatacaa 372  Q
    ||||||||||||||||||||||||| |||||||||    
T  52082861 agccaaatggagagacttcacttgagggtatacaa 52082895  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 52093064 - 52093097
Alignment:
Q  339 gccaaatggagagacttcacttgacggtatacaa 372  Q
    |||||||||||||||||||||||| |||||||||    
T  52093064 gccaaatggagagacttcacttgagggtatacaa 52093097  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 8184116 - 8184051
Alignment:
Q  100 ctttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagttt 165  Q
    ||||||||| ||||| ||| ||  ||||||||||||||  | |||||||||||| |||||||||||    
T  8184116 ctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagttt 8184051  T

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