View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9047_low_3 (Length: 361)

Name: NF9047_low_3
Description: NF9047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9047_low_3
NF9047_low_3
[»] chr6 (13 HSPs)
chr6 (1-361)||(176262-176622)
chr6 (1-121)||(1470926-1471046)
chr6 (1-121)||(1459544-1459664)
chr6 (11-138)||(7564737-7564864)
chr6 (9-136)||(1442096-1442223)
chr6 (18-127)||(370782-370891)
chr6 (177-287)||(1453677-1453787)
chr6 (177-287)||(1465369-1465479)
chr6 (1-126)||(1453838-1453963)
chr6 (1-126)||(1465530-1465655)
chr6 (177-250)||(1459403-1459476)
chr6 (72-121)||(9819832-9819881)
chr6 (73-121)||(9703889-9703937)
[»] chr4 (1 HSPs)
chr4 (33-134)||(55419742-55419843)
[»] chr7 (1 HSPs)
chr7 (7-126)||(3926993-3927112)
[»] chr3 (3 HSPs)
chr3 (84-132)||(2442050-2442098)
chr3 (77-134)||(4142124-4142181)
chr3 (77-129)||(4157939-4157991)
[»] chr2 (3 HSPs)
chr2 (84-127)||(6538845-6538888)
chr2 (77-126)||(7160752-7160801)
chr2 (77-126)||(7168688-7168737)
[»] scaffold0044 (1 HSPs)
scaffold0044 (67-121)||(89137-89191)
[»] chr5 (2 HSPs)
chr5 (84-129)||(23766857-23766902)
chr5 (84-129)||(23816705-23816750)


Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 176262 - 176622
Alignment:
Q  1 cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  176262 cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaatgattatggaa 176361  T
Q  101 ataaagattcttggactaaatcgttcactcttccattcgccgaattcgttggtcttgatggcgtctgcattactcggctttatatttctgaggaggacca 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176362 ataaagattcttggactaaattgttcactcttccatttgccgaattcgttggtcttgatggcgtctgcattactcggctttatatttctgaggaggacca 176461  T
Q  201 ccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagattcaaggcctcccatgtatttccttc 300  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176462 ccaagtgttcgtgtacttcatcaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagattcaaggcctcccatgtatttccttc 176561  T
Q  301 aactcaaatatctatcttgagagttccttcaactgtgatgtctatgttgagagtctcatat 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176562 aactcaaatatctatcttgagagttccttcaactgtgatgtctatgttgagagtctcatat 176622  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 1471046 - 1470926
Alignment:
Q  1 cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaa 100  Q
    ||||||| |||||| |||||||||||||||||||||| | ||||| |||||||||| ||| || |||||||||||||||||  |||||| ||||||||||    
T  1471046 cctctgcgtaactttagcttgggggtttctagggattacttatgcatccttgctcataccaaatcttttttggatatttgggttatgaaagattatggaa 1470947  T
Q  101 ataaagattcttggactaaat 121  Q
    |||||||||||||| ||||||    
T  1470946 ataaagattcttggtctaaat 1470926  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 1459664 - 1459544
Alignment:
Q  1 cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaa 100  Q
    |||||||||||||| ||||||||||||| |||||||| | |||||||||||||||| ||  || |||||||||||||||||  |||||| |||| |||||    
T  1459664 cctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttggaa 1459565  T
Q  101 ataaagattcttggactaaat 121  Q
    ||||||| |||||||||||||    
T  1459564 ataaagaatcttggactaaat 1459544  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 7564864 - 7564737
Alignment:
Q  11 acttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattc 110  Q
    |||| ||||| ||||||| |||||||||| |||| ||||||||||||||   |||||||||| ||||||||  |||||| ||||||||||| || |||||    
T  7564864 actttagcttaggggtttgtagggattgcttatgggtccttgctcacactacaacttttttgaatatttgggttatgaaggattatggaaacaaggattc 7564765  T
Q  111 ttggactaaatcgttcactcttccattc 138  Q
    ||||||||||| ||||| | ||||||||    
T  7564764 ttggactaaattgttcagtgttccattc 7564737  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 1442223 - 1442096
Alignment:
Q  9 taacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagat 108  Q
    |||||| |||||||||||||| |  |||||| ||||| |||||||||| | || |||| |||||||||  |||  |||||| |||||||||| |||||||    
T  1442223 taacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggaactattttggatacatgggttatgaaggattatggaattaaagat 1442124  T
Q  109 tcttggactaaatcgttcactcttccat 136  Q
    ||||||||||||| ||||||| ||||||    
T  1442123 tcttggactaaattgttcactgttccat 1442096  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 370891 - 370782
Alignment:
Q  18 cttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggact 117  Q
    ||||| |||||||||||||||| ||||| |||||||||| ||  |||||||| |||   |||||  ||||||  ||||||||||||||||||||||||||    
T  370891 cttggaggtttctagggattgcttatgcatccttgctcagactaaaacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggact 370792  T
Q  118 aaatcgttca 127  Q
    |||| |||||    
T  370791 aaattgttca 370782  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 1453787 - 1453677
Alignment:
Q  177 gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagatt 276  Q
    |||||||||||| ||||||||   |||||||||| | ||||| ||  || |||||||||||||||||||||||| | || |  |||||| ||| ||||||    
T  1453787 gctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaagatt 1453688  T
Q  277 caaggcctccc 287  Q
    |||||||||||    
T  1453687 caaggcctccc 1453677  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 1465479 - 1465369
Alignment:
Q  177 gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagatt 276  Q
    |||||||||||| ||||||||   |||||||||| | ||||| ||  || |||||||||||||||||||||||| | || |  |||||| ||| ||||||    
T  1465479 gctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaagatt 1465380  T
Q  277 caaggcctccc 287  Q
    |||||||||||    
T  1465379 caaggcctccc 1465369  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 1453963 - 1453838
Alignment:
Q  1 cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaa 100  Q
    ||||||||| |||| |||||||| || |||||||||||| ||||| ||||||||||| |  |    | ||||||||| |||  ||||||  |||||||||    
T  1453963 cctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaa 1453864  T
Q  101 ataaagattcttggactaaatcgttc 126  Q
    ||||||| ||||||| ||||| ||||    
T  1453863 ataaagactcttggaataaattgttc 1453838  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 1465655 - 1465530
Alignment:
Q  1 cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaa 100  Q
    ||||||||| |||| |||||||| || |||||||||||| ||||| ||||||||||| |  |    | ||||||||| |||  ||||||  |||||||||    
T  1465655 cctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaa 1465556  T
Q  101 ataaagattcttggactaaatcgttc 126  Q
    ||||||| ||||||| ||||| ||||    
T  1465555 ataaagactcttggaataaattgttc 1465530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 1459476 - 1459403
Alignment:
Q  177 gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaaga 250  Q
    |||||||||||||||||| ||  |||||||| || | || ||| | |||||| |||||||||||||||||||||    
T  1459476 gctttatatttctgaggaagatgaccaagtggtcctagatttctataataagatatatgtttacaattacaaga 1459403  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 9819881 - 9819832
Alignment:
Q  72 ggatatttggcgtatgaacgattatggaaataaagattcttggactaaat 121  Q
    ||||||||||| |||||| || |||||||||| ||| |||||||||||||    
T  9819881 ggatatttggcttatgaaggaatatggaaatagagactcttggactaaat 9819832  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 9703937 - 9703889
Alignment:
Q  73 gatatttggcgtatgaacgattatggaaataaagattcttggactaaat 121  Q
    |||||||||| |||||| || |||||||||| ||||| |||||||||||    
T  9703937 gatatttggcttatgaaggaatatggaaatagagatttttggactaaat 9703889  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 55419742 - 55419843
Alignment:
Q  33 ggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactctt 132  Q
    ||||||| |||||||| ||||||||||| |  ||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||| ||| ||| ||    
T  55419742 ggattgcttatgcgtcgttgctcacaccaattcttttttggatatctggcttatgaaggtttatggaaataaagattcttggactaaattgtttactatt 55419841  T
Q  133 cc 134  Q
    ||    
T  55419842 cc 55419843  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 3926993 - 3927112
Alignment:
Q  7 cataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaag 106  Q
    |||| ||||| ||| |||||||||| ||||||| | || ||||||| | |||| |||||||| |||| |||||||  |||||| |||||||||||||||     
T  3926993 catatcttcaccttaggggtttctaaggattgcttgtgtgtccttgtttacactgaaactttgttgggtatttgggttatgaaggattatggaaataaaa 3927092  T
Q  107 attcttggactaaatcgttc 126  Q
    ||||||||||||||| ||||    
T  3927093 attcttggactaaattgttc 3927112  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 2442050 - 2442098
Alignment:
Q  84 tatgaacgattatggaaataaagattcttggactaaatcgttcactctt 132  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||||    
T  2442050 tatgaaggagtatggaaataaagattcttggactaaattgttcactctt 2442098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 4142181 - 4142124
Alignment:
Q  77 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactcttcc 134  Q
    |||||| |||||| || |||||||||||||| ||||||||||||| ||||||| ||||    
T  4142181 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 4142124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 4157991 - 4157939
Alignment:
Q  77 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcact 129  Q
    |||||| |||||| || |||||||||||||| ||||||||||||| |||||||    
T  4157991 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4157939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 6538845 - 6538888
Alignment:
Q  84 tatgaacgattatggaaataaagattcttggactaaatcgttca 127  Q
    |||||| || |||||||||||||||||||||||||||| |||||    
T  6538845 tatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 7160801 - 7160752
Alignment:
Q  77 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttc 126  Q
    |||||| |||||| || ||||||||||| |||||||||||||||| ||||    
T  7160801 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 7168737 - 7168688
Alignment:
Q  77 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttc 126  Q
    |||||| |||||| || ||||||||||| |||||||||||||||| ||||    
T  7168737 tttggcttatgaaggaatatggaaataacgattcttggactaaattgttc 7168688  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 89137 - 89191
Alignment:
Q  67 tttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaat 121  Q
    ||||| |||||||||  |||||| || |||||||||||||| |||||||||||||    
T  89137 ttttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaat 89191  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 23766902 - 23766857
Alignment:
Q  84 tatgaacgattatggaaataaagattcttggactaaatcgttcact 129  Q
    |||||| || |||||||||||||| ||||||||||||| |||||||    
T  23766902 tatgaaagaatatggaaataaagagtcttggactaaattgttcact 23766857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 23816750 - 23816705
Alignment:
Q  84 tatgaacgattatggaaataaagattcttggactaaatcgttcact 129  Q
    |||||| || |||||||||||||| ||||||||||||| |||||||    
T  23816750 tatgaaagaatatggaaataaagagtcttggactaaattgttcact 23816705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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