View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9048_high_3 (Length: 441)
Name: NF9048_high_3
Description: NF9048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9048_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 33079790 - 33079414
Alignment:
| Q |
15 |
cacagataccgatgcaaataactacatgacacgttgaaaccggtagtaatataagaaaataaataa---caaataaattgaatgtaatcacatgtgtcgg |
111 |
Q |
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| T |
33079790 |
cacagataccgatgcaaataactacatgacacgttgaaaccggtagtaatataagaaaataaataataacaaataaattgaatgtaatcacatgtgtcgg |
33079691 |
T |
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| Q |
112 |
acacgaacaaacatgtgtcataaaccggatacgtctttgatcagaaagaaatattggtgtttaaaagagaatgaaatgaaaaagtaggttatgatgatta |
211 |
Q |
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| T |
33079690 |
acacgaacgaacatgtatcagacacaggatacgtctctgatcagaaa----tatcgatgtttaaaagagaatgaaatgaaaaagtaggttatgatgatta |
33079595 |
T |
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| Q |
212 |
cgtaccaatgaacagagagctccgatctatgacagagctctc------------tttgaaacggaatgaaagagaaggtggtgaaacggaaacggttatt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33079594 |
cgtaccaatgaacagagagctccgatctatgacagagctctctttgtctctctctttgaaacggaatgaaagagaaggtggtgaaaaggaaacggttatt |
33079495 |
T |
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| Q |
300 |
gataaacgacggagaaacgaagggggaggtgctaacgtgcgc-aagggggtggtgttgctggtttatgaaggaaatgagaa |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| |
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| T |
33079494 |
gataaacgacggagaaacgaagggggaggtgctaacgtgcgcgaggggggtgttgttgctggtttatgaaggaaatgagaa |
33079414 |
T |
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