View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9048_low_15 (Length: 336)
Name: NF9048_low_15
Description: NF9048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9048_low_15 |
 | |
|
| [»] chr5 (8 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
| [»] scaffold0028 (2 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| |
|
| [»] scaffold0500 (1 HSPs) |
| | |
|
| [»] scaffold0049 (1 HSPs) |
| |
|
| [»] scaffold0163 (1 HSPs) |
| | |
|
| [»] scaffold0066 (1 HSPs) |
| | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 15328339 - 15328004
Alignment:
| Q |
1 |
aaattctgtttcagaaaagaaaaagaattagccattcaaaagaagaaatccatgtttaaaacaaatatcaccaagttccataaaggaaattttttaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15328339 |
aaattctgtttcagaaaagaaaaagaattagccattcaaaagaagaaatccatgtttaaaacaaatatcaccaagttccgtaaaggaaattttttaagaa |
15328240 |
T |
|
| Q |
101 |
ataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15328239 |
ataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcaggaatgcctcataacagtcaagaaaaagccttggt |
15328140 |
T |
|
| Q |
201 |
acttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15328139 |
acttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatga |
15328040 |
T |
|
| Q |
301 |
acaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
15328039 |
acaggctcgaatcaaaggtaagggaattattggtaa |
15328004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 18710420 - 18710755
Alignment:
| Q |
1 |
aaattctgtttcagaaaagaaaaagaattagccattcaaaagaagaaatccatgtttaaaacaaatatcaccaagttccataaaggaaattttttaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18710420 |
aaattctgtttcagaaaagaaaaagaattagccattcaaaagaagaaatccatgtttaaaacaaatatcaccaagttccgtaaaggaaattttttaagaa |
18710519 |
T |
|
| Q |
101 |
ataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18710520 |
ataacactaaccatgaaggacccaaaaaaatatgggtacccaaaactttactaacttctactgcaggaatgcctcataacagtcaagaaaaagccttggt |
18710619 |
T |
|
| Q |
201 |
acttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18710620 |
acttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatga |
18710719 |
T |
|
| Q |
301 |
acaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
18710720 |
acaggctcgaatcaaaggtaagggaattattggtaa |
18710755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 100 - 301
Target Start/End: Complemental strand, 725961 - 725760
Alignment:
| Q |
100 |
aataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttgg |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
725961 |
aataacactaaccatcaaggacccaaaaaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctgg |
725862 |
T |
|
| Q |
200 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
725861 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagctttctctccttcaccaaaaaggaaggaggattggtaaccttcggtaataatg |
725762 |
T |
|
| Q |
300 |
aa |
301 |
Q |
| |
|
|| |
|
|
| T |
725761 |
aa |
725760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 336
Target Start/End: Original strand, 5603206 - 5603357
Alignment:
| Q |
185 |
aagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaa |
284 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||| || ||||| || ||||||||| ||||| | ||||||| | |||||||||||| | || | |
|
|
| T |
5603206 |
aagaaaaagccatggtacttggacagtggctgttcaaggcacatgacaggggataaacaatgtttcatctccttcgaaaagaaagaaggaggactggtga |
5603305 |
T |
|
| Q |
285 |
cctttggtaacaatgaacaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
||||||| || ||||| | | || |||||||||||| || ||||||||||| |
|
|
| T |
5603306 |
cctttggaaataatgataaaggtcaaatcaaaggtaaaggtattattggtaa |
5603357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 300
Target Start/End: Original strand, 24415240 - 24415350
Alignment:
| Q |
190 |
aaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaaccttt |
289 |
Q |
| |
|
|||||| ||||||||||||||||| || || ||||| |||||||| ||||||||| | ||| | |||||| |||| |||||||| ||||||||||| |
|
|
| T |
24415240 |
aaagccatggtacttggacagtggttgttctagacacatgactggggataaacaatgcttcatctccttcacaaaaaaggaaggaggtctagtaaccttt |
24415339 |
T |
|
| Q |
290 |
ggtaacaatga |
300 |
Q |
| |
|
|| || ||||| |
|
|
| T |
24415340 |
ggcaataatga |
24415350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 300
Target Start/End: Complemental strand, 30451967 - 30451857
Alignment:
| Q |
190 |
aaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaaccttt |
289 |
Q |
| |
|
|||||| ||||||||||||||||| || || ||||| |||||||| ||||||||| | ||| | |||||| |||| |||||||| ||||||||||| |
|
|
| T |
30451967 |
aaagccatggtacttggacagtggttgttctagacacatgactggggataaacaatgcttcatctccttcacaaaaaaggaaggaggtctagtaaccttt |
30451868 |
T |
|
| Q |
290 |
ggtaacaatga |
300 |
Q |
| |
|
|| || ||||| |
|
|
| T |
30451867 |
ggcaataatga |
30451857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 21081886 - 21081812
Alignment:
| Q |
184 |
caagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatcctt |
258 |
Q |
| |
|
|||||||| || |||||||||||| ||||| |||||||| |||||||| || |||||| | |||| |||||||| |
|
|
| T |
21081886 |
caagaaaaggcattggtacttggagagtggttgctcaaggcatatgacaggggataaagactgttttctatcctt |
21081812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 22455128 - 22455058
Alignment:
| Q |
266 |
aaagaaggaggattagtaacctttggtaacaatgaacaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | | || |||||||||||| | ||||||||||| |
|
|
| T |
22455128 |
aaagaaggaggagcagtaacctttggtaacaatgataaaggtcaaatcaaaggtaaatgtattattggtaa |
22455058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 45496787 - 45496455
Alignment:
| Q |
1 |
aaattctgtttcagaaaagaaaaagaattagccattcaaaagaagaaatccatgtttaaaacaaatatcaccaagttccataaaggaaattttttaagaa |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||| | || || ||||||||||||| ||||| ||||||||||||||||||| | || |
|
|
| T |
45496787 |
aaattttgttttagaaaagaaaaagaattagccattcaaaagaaaagatacaggtttaaaacaaatctcacccagttccataaaggaaatttcgt---aa |
45496691 |
T |
|
| Q |
101 |
ataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45496690 |
ataacactaaccatgaaggacccaaaaaaatatgggtacccaagactctactaacttctactgcaggaatgcctcataacagtcaagaaaaagccttggt |
45496591 |
T |
|
| Q |
201 |
acttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45496590 |
acttggacagtggatgctcaagacatatgactggagataaacaaagttttctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatga |
45496491 |
T |
|
| Q |
301 |
acaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
45496490 |
acaggctcgaatcaaaggtaagggaattattggtaa |
45496455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 33599186 - 33599116
Alignment:
| Q |
266 |
aaagaaggaggattagtaacctttggtaacaatgaacaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | | || |||||||||||| || ||||||||||| |
|
|
| T |
33599186 |
aaagaaggaggagcagtaacctttggtaacaatgataaaggtcaaatcaaaggtaaaggtattattggtaa |
33599116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 23746438 - 23746381
Alignment:
| Q |
184 |
caagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaa |
241 |
Q |
| |
|
|||||||| || |||||||||||| ||||| |||||||| |||||||| || |||||| |
|
|
| T |
23746438 |
caagaaaaggcattggtacttggagagtggttgctcaaggcatatgacaggggataaa |
23746381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 14934732 - 14935064
Alignment:
| Q |
1 |
aaattctgtttcagaaaagaaaaagaattagccattcaaaagaagaaatccatgtttaaaacaaatatcaccaagttccataaaggaaattttttaagaa |
100 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||||||||||| | || |||||||||||||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
14934732 |
aaattttgttttagaaaagaaaaagaattagtcattcaaaagaaaagatacatgtttaaaacaaatctcacccagttccataaaggaaatttcttaa--- |
14934828 |
T |
|
| Q |
101 |
ataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14934829 |
ataacactaaccatgaaggacccaaaaaaatatgggtacccaagactctactaacttctactgcaggaatgcctcataacagtcaagaaaaagccttggt |
14934928 |
T |
|
| Q |
201 |
acttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14934929 |
acttggacagtggatgctcaagacatatgactggagataaacaaagttttctatccttcgtcgaaaaagaaggaggattagtaaactttggtaacaatga |
14935028 |
T |
|
| Q |
301 |
acaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
14935029 |
acaggctcgaatcaaaggtaagggaattattggtaa |
14935064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 114671 - 114872
Alignment:
| Q |
100 |
aataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttgg |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
114671 |
aataacactaaccatcaaggacccaaaaaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctgg |
114770 |
T |
|
| Q |
200 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
114771 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagctttctctccttcaccaaaaaggaaggaggattggtaaccttcggtaataatg |
114870 |
T |
|
| Q |
300 |
aa |
301 |
Q |
| |
|
|| |
|
|
| T |
114871 |
aa |
114872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 300
Target Start/End: Original strand, 26814902 - 26815012
Alignment:
| Q |
190 |
aaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaaccttt |
289 |
Q |
| |
|
|||||| ||||||||||||||||| || || ||||| |||||||| ||||||||| ||||| | |||||| | |||| |||||||| ||||||||||| |
|
|
| T |
26814902 |
aaagccatggtacttggacagtggttgttctagacacatgactggggataaacaatgtttcatctccttcataaaaaaggaaggaggtctagtaaccttt |
26815001 |
T |
|
| Q |
290 |
ggtaacaatga |
300 |
Q |
| |
|
|| || ||||| |
|
|
| T |
26815002 |
ggcaataatga |
26815012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 300
Target Start/End: Complemental strand, 54697151 - 54697041
Alignment:
| Q |
190 |
aaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaaccttt |
289 |
Q |
| |
|
|||||| ||||||||||||||||| || || ||||| |||||||| ||||||||| | ||| | |||||| |||| |||||||| ||||||||||| |
|
|
| T |
54697151 |
aaagccatggtacttggacagtggttgttctagacacatgactggggataaacaatgcttcatctccttcacaaaaaaggaaggaggtctagtaaccttt |
54697052 |
T |
|
| Q |
290 |
ggtaacaatga |
300 |
Q |
| |
|
|| || ||||| |
|
|
| T |
54697051 |
ggcaataatga |
54697041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 100 - 320
Target Start/End: Original strand, 19687320 - 19687540
Alignment:
| Q |
100 |
aataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttgg |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
19687320 |
aataacactaaccatcaaggacccaaaaaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctgg |
19687419 |
T |
|
| Q |
200 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
19687420 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagctttctctccttcaccaaaaaggaaggaggattggtaaccttcggtaataatg |
19687519 |
T |
|
| Q |
300 |
aacaggctcgaatcaaaggta |
320 |
Q |
| |
|
|| | ||||||| ||||||| |
|
|
| T |
19687520 |
aaaaatctcgaattaaaggta |
19687540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 99 - 336
Target Start/End: Complemental strand, 25508828 - 25508591
Alignment:
| Q |
99 |
aaataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttg |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||| |||| | ||| ||| ||||||||| ||| || |
|
|
| T |
25508828 |
aaataacactaaccatcaaggacccaaaaagatatgggtacccaagacactactaacttctacagcaggaatgtcacatgacaatcaagaaaaggccctg |
25508729 |
T |
|
| Q |
199 |
gtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaat |
298 |
Q |
| |
|
| ||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||| |||||||| ||| |
|
|
| T |
25508728 |
gcactgggatagtggatgctcaaaacatatgactggagacaaacaaagtttcctatccttcattgaaaaagaaggaggcctagtaacgtttggtaataat |
25508629 |
T |
|
| Q |
299 |
gaacaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
||||| ||||| || |||||||| || |||||||||| |
|
|
| T |
25508628 |
gaacaagctcgtattaaaggtaaaggtgttattggtaa |
25508591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 181 - 312
Target Start/End: Complemental strand, 5148147 - 5148016
Alignment:
| Q |
181 |
agtcaagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggatta |
280 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||||||||||||| ||| |||||||||||||| ||| ||| | ||| ||||||||||| |||| ||| |
|
|
| T |
5148147 |
agtcaagaaaaggccttggtacttggaccgaggatgctcaagacatttgattggagataaacaaaattttctacctttcatcgaaaaagaatgaggttta |
5148048 |
T |
|
| Q |
281 |
gtaacctttggtaacaatgaacaggctcgaat |
312 |
Q |
| |
|
|||| |||||| | |||||||| |||||||| |
|
|
| T |
5148047 |
ataacttttggtgataatgaacaagctcgaat |
5148016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 320
Target Start/End: Complemental strand, 40091040 - 40090904
Alignment:
| Q |
184 |
caagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagta |
283 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||| |||||||| || |||||| | |||| || ||||||| ||||| |||||||||| |||| |
|
|
| T |
40091040 |
caagaaaaggcattggtacttggacagtggttgctcaaggcatatgacaggggataaagattgttttctctccttcgaagaaaaggaaggaggatcagta |
40090941 |
T |
|
| Q |
284 |
acctttggtaacaatgaacaggctcgaatcaaaggta |
320 |
Q |
| |
|
|| |||||||||||||| | ||| ||||||||||| |
|
|
| T |
40090940 |
acttttggtaacaatgataaagctaaaatcaaaggta |
40090904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 2157857 - 2157993
Alignment:
| Q |
184 |
caagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagta |
283 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||| |||||||| || |||||| |||| || ||||||| ||||| |||||||||| |||| |
|
|
| T |
2157857 |
caagaaaaggcattggtacttggacagtggttgctcaaggcatatgacaggggataaaggttgttttctctccttcgaagaaaaggaaggaggatcagta |
2157956 |
T |
|
| Q |
284 |
acctttggtaacaatgaacaggctcgaatcaaaggta |
320 |
Q |
| |
|
|| |||||||||||||| | ||| ||||||||||| |
|
|
| T |
2157957 |
acttttggtaacaatgataaagctaaaatcaaaggta |
2157993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 336
Target Start/End: Original strand, 48981309 - 48981460
Alignment:
| Q |
185 |
aagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaa |
284 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||| || ||||| || ||||||||| ||||| | ||||||| | |||||||||||| | | | |
|
|
| T |
48981309 |
aagaaaaagccatggtacttggacagtggttgttcaaggcacatgacaggggataaacaatgtttcatctccttcgaaaagaaagaaggaggactgatga |
48981408 |
T |
|
| Q |
285 |
cctttggtaacaatgaacaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
||||||| || ||||| | | || |||||||||||| || ||||||||||| |
|
|
| T |
48981409 |
cctttggaaataatgataaaggtcaaatcaaaggtaaaggtattattggtaa |
48981460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 300
Target Start/End: Complemental strand, 28362057 - 28361947
Alignment:
| Q |
190 |
aaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaaccttt |
289 |
Q |
| |
|
|||||| ||||||||||||||||| || || ||||| |||||||| ||||||||| ||||| | |||||| | |||| |||||||| ||||||||||| |
|
|
| T |
28362057 |
aaagccatggtacttggacagtggttgttctagacacatgactggggataaacaatgtttcatctccttcataaaaaaggaaggaggtctagtaaccttt |
28361958 |
T |
|
| Q |
290 |
ggtaacaatga |
300 |
Q |
| |
|
|| || ||||| |
|
|
| T |
28361957 |
ggcaataatga |
28361947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 19638294 - 19638328
Alignment:
| Q |
106 |
actaaccatgaaggacccaaaaagatatgggtacc |
140 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19638294 |
actaaccataaaggacccaaaaagatatgggtacc |
19638328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 51538 - 51739
Alignment:
| Q |
100 |
aataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttgg |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
51538 |
aataacactaaccatcaaggacccaaaaaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctgg |
51637 |
T |
|
| Q |
200 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
51638 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagctttctctccttcaccaaaaaggaaggaggattggtaaccttcggtaataatg |
51737 |
T |
|
| Q |
300 |
aa |
301 |
Q |
| |
|
|| |
|
|
| T |
51738 |
aa |
51739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 609255 - 609456
Alignment:
| Q |
100 |
aataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttgg |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
609255 |
aataacactaaccatcaaggacccaaaaaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctgg |
609354 |
T |
|
| Q |
200 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
609355 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagctttctctccttcaccaaaaaggaaggaggattggtaaccttcggtaataatg |
609454 |
T |
|
| Q |
300 |
aa |
301 |
Q |
| |
|
|| |
|
|
| T |
609455 |
aa |
609456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 300
Target Start/End: Original strand, 15178147 - 15178257
Alignment:
| Q |
190 |
aaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaaccttt |
289 |
Q |
| |
|
|||||| ||||||||||| ||||| || || ||||| |||||||| ||||||||| | ||| | |||||| | |||| |||||||| ||||||||||| |
|
|
| T |
15178147 |
aaagccatggtacttggatagtggttgttctagacacatgactggggataaacaatgcttcatctccttcataaaaaaggaaggaggtctagtaaccttt |
15178246 |
T |
|
| Q |
290 |
ggtaacaatga |
300 |
Q |
| |
|
||||| ||||| |
|
|
| T |
15178247 |
ggtaataatga |
15178257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 8997369 - 8997570
Alignment:
| Q |
100 |
aataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttgg |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
8997369 |
aataacactaaccatcaaggacccaaaaaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctgg |
8997468 |
T |
|
| Q |
200 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
8997469 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagctttctctccttcaccaaaaaggaaggaggattggtaaccttcggtaataatg |
8997568 |
T |
|
| Q |
300 |
aa |
301 |
Q |
| |
|
|| |
|
|
| T |
8997569 |
aa |
8997570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 103 - 321
Target Start/End: Original strand, 11376322 - 11376540
Alignment:
| Q |
103 |
aacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttggtac |
202 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||| ||||||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
11376322 |
aacactaaccatcaaggacccagaaaaatatgggtatccaaaacactactaactcatactgcaggaatgtctcataacagtcaagaaaaagccttggtac |
11376421 |
T |
|
| Q |
203 |
ttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatgaac |
302 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| |||||||| ||||| |||||| | | |||||||||||| ||||||||||||||||| || |||| |
|
|
| T |
11376422 |
ttggacaatggatgctcaagacatatgaatggagacaaacaaagcttcctgtccttcattgtaaaagaaggaggcttagtaacctttggtaataacgaac |
11376521 |
T |
|
| Q |
303 |
aggctcgaatcaaaggtaa |
321 |
Q |
| |
|
| || || ||||||||||| |
|
|
| T |
11376522 |
aagcacgcatcaaaggtaa |
11376540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 9006552 - 9006753
Alignment:
| Q |
100 |
aataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttgg |
199 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
9006552 |
aataacactaaccatcaaggacccagaaaattatgggtacccaaagcactactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctgg |
9006651 |
T |
|
| Q |
200 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
9006652 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagctttctctccttcaccaaaaaggaaggaggattggtaaccttcggtaataatg |
9006751 |
T |
|
| Q |
300 |
aa |
301 |
Q |
| |
|
|| |
|
|
| T |
9006752 |
aa |
9006753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 99 - 336
Target Start/End: Original strand, 17945639 - 17945876
Alignment:
| Q |
99 |
aaataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttg |
198 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| ||||| |||| ||||| | ||||||||||| ||| | |
|
|
| T |
17945639 |
aaataacactaaccacataggacccaaaaaaatatgggtacccaaaacactactaacttctattgcaggaatgtctcatgatagtcaagaaaaggcccta |
17945738 |
T |
|
| Q |
199 |
gtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaat |
298 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| |||||||||||||||| || | ||| ||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
17945739 |
gtacttggacattggatgctcaagatatatgactagagataaacaaagttttctctaattcatcgaaaaagaaggaggattggtaacctttggtaataat |
17945838 |
T |
|
| Q |
299 |
gaacaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
||||| | | ||||||||||||| ||||| |||||||| |
|
|
| T |
17945839 |
gaacaagtttgaatcaaaggtaaaggaatcattggtaa |
17945876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 103 - 336
Target Start/End: Complemental strand, 27748464 - 27748231
Alignment:
| Q |
103 |
aacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttggtac |
202 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||| |||| || ||||| |||||||| |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
27748464 |
aacactaaccatcaaggacccagaaaaatatgggtaccaaaaaaaatattaactcatactgcaggaatgtctcatgacagtcaagaaaaagccttggtac |
27748365 |
T |
|
| Q |
203 |
ttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatgaac |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| | |||||||||||||| ||||| || ||||| || || |||| |
|
|
| T |
27748364 |
ttggacagtggatgctcaagacatatgactggagacaaacaaagcttcctgtccttcattgaaaaagaaggaggcttagtgacttttggcaataacgaac |
27748265 |
T |
|
| Q |
303 |
aggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
| || || ||||||||||| || |||||||||| |
|
|
| T |
27748264 |
aagcacgcatcaaaggtaaaggtgttattggtaa |
27748231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 301
Target Start/End: Original strand, 32093862 - 32094007
Alignment:
| Q |
156 |
ttctactgcagaaatgcctcataacagtcaagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatc |
255 |
Q |
| |
|
||||| |||| ||||| ||||||| ||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||||| || | |
|
|
| T |
32093862 |
ttctagtgcaaaaatgtctcataatagtcaagaaaagaccctagtacttggacagtggatgctcaagacatacgactggagataaacaaagttttctcac |
32093961 |
T |
|
| Q |
256 |
cttcgtcgaaaaagaaggaggattagtaacctttggtaacaatgaa |
301 |
Q |
| |
|
|||| || |||| |||||||||||||| || |||||||| |||||| |
|
|
| T |
32093962 |
cttcatcaaaaaggaaggaggattagtgacttttggtaataatgaa |
32094007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 84345 - 84546
Alignment:
| Q |
100 |
aataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttgg |
199 |
Q |
| |
|
|||||||||| |||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
84345 |
aataacactatccatcaaggacccaaaaaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctgg |
84444 |
T |
|
| Q |
200 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
84445 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagctttctctccttcaccaaaaaggaaggaggattggtaaccttcggtaataatg |
84544 |
T |
|
| Q |
300 |
aa |
301 |
Q |
| |
|
|| |
|
|
| T |
84545 |
aa |
84546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 300
Target Start/End: Complemental strand, 101665 - 101555
Alignment:
| Q |
190 |
aaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaaccttt |
289 |
Q |
| |
|
|||||| ||||||||||||||||| || || ||||| |||||||| ||||||||| | ||| | |||||| |||| |||||||| ||||||||||| |
|
|
| T |
101665 |
aaagccatggtacttggacagtggttgttctagacacatgactggggataaacaatgcttcatctccttcacaaaaaaggaaggaggtctagtaaccttt |
101566 |
T |
|
| Q |
290 |
ggtaacaatga |
300 |
Q |
| |
|
|| || ||||| |
|
|
| T |
101565 |
ggcaataatga |
101555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 24991576 - 24991777
Alignment:
| Q |
100 |
aataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttgg |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
24991576 |
aataacactaaccatcaaggacccaaaaaaatatgggtacccaatgtattactaatttctactgcaggaatgtctcataacagtcaagaaaaagccctgg |
24991675 |
T |
|
| Q |
200 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
24991676 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagctttctctccttcaccaaaaaggaaggaggattggtaaccttcggtaataatg |
24991775 |
T |
|
| Q |
300 |
aa |
301 |
Q |
| |
|
|| |
|
|
| T |
24991776 |
aa |
24991777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 336
Target Start/End: Original strand, 1793591 - 1793742
Alignment:
| Q |
185 |
aagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaa |
284 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||| || ||||| || ||||||||| ||||| | ||||||| | |||||||||||| | || | |
|
|
| T |
1793591 |
aagaaaaagccatggtacttggacagtggttgttcaaggcacatgacaggggataaacaatgtttcatctccttcgaaaagaaagaaggaggactggtga |
1793690 |
T |
|
| Q |
285 |
cctttggtaacaatgaacaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
||||||| || ||||| | | || |||||||||||| || ||||||||||| |
|
|
| T |
1793691 |
cctttggaaataatgataaaggtcaaatcaaaggtaaaggtattattggtaa |
1793742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 103 - 336
Target Start/End: Original strand, 165804 - 166036
Alignment:
| Q |
103 |
aacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttggtac |
202 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||||||||||||||| |||||||| |||||||| |||| ||||| ||||| |||||||| | ||||||| |
|
|
| T |
165804 |
aacactaaccatcaaggacccagaaaaatatgggtacccaaaaaactactaactcatactgcaggaatgtctcatgacagtaaagaaaaatc-ttggtac |
165902 |
T |
|
| Q |
203 |
ttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatgaac |
302 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| | |||||||| ||||| |||||| | |||||| |||||||||||||||| |||||||| || |||| |
|
|
| T |
165903 |
tttgacagtggatgctcaagacatatgactggatacaaacaaagcttcctgtccttcattgaaaaaaaaggaggattagtaacttttggtaataacgaac |
166002 |
T |
|
| Q |
303 |
aggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
| || || ||||||||||| || |||||||||| |
|
|
| T |
166003 |
aagcacgcatcaaaggtaaaggtgttattggtaa |
166036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0500 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0500
Description:
Target: scaffold0500; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 6376 - 6576
Alignment:
| Q |
100 |
aataacactaaccatgaaggacccaaaaagatatgggtacccaaaactttactaacttctactgcagaaatgcctcataacagtcaagaaaaagccttgg |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||| ||| |
|
|
| T |
6376 |
aataacactaaccatcaaggacccaaaaaaatatgggtacccaaggtattactaacttctactgcaggaatgtctcataacaatcaagaaaaagccctgg |
6475 |
T |
|
| Q |
200 |
tacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaacaatg |
299 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || |||||||| ||| || || |||||| | |||| ||||||||||| || ||||| |||||||||| |
|
|
| T |
6476 |
tacttgaacagtggatgctcaagacatatgaatgaagataaac-aagctttctctccttcaccaaaaaggaaggaggattggtgaccttcggtaacaatg |
6574 |
T |
|
| Q |
300 |
aa |
301 |
Q |
| |
|
|| |
|
|
| T |
6575 |
aa |
6576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 17608 - 17748
Alignment:
| Q |
196 |
ttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacctttggtaac |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| | |||||||||||||| |||||||| || ||||| |
|
|
| T |
17608 |
ttggtacttggacagtggatgctcaagacatatgactggagacaaacaaagcttcctgtccttcattgaaaaagaaggaggcttagtaactttcggtaat |
17707 |
T |
|
| Q |
296 |
aatgaacaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
|| ||||| || || |||||||||||||| |||||||||| |
|
|
| T |
17708 |
aacgaacaagcacgcatcaaaggtaagggtgttattggtaa |
17748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 18507 - 18643
Alignment:
| Q |
184 |
caagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagta |
283 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||| |||||||| ||||||||| |||| || ||||||| |||| |||||||||| |||| |
|
|
| T |
18507 |
caagaaaaggcattggtacttggacagtggttgctcaaggcatatgacaggagataaaggttgttttctctccttcgaagaaagggaaggaggatcagta |
18606 |
T |
|
| Q |
284 |
acctttggtaacaatgaacaggctcgaatcaaaggta |
320 |
Q |
| |
|
|| |||||||||||||| | ||| ||||||||||| |
|
|
| T |
18607 |
acatttggtaacaatgataaagctaaaatcaaaggta |
18643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 2331 - 2215
Alignment:
| Q |
184 |
caagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagta |
283 |
Q |
| |
|
|||||||| || |||||||||||| ||||| |||||||| |||||||| || |||||| || ||| ||||||||| |||| ||| | ||||| |||| |
|
|
| T |
2331 |
caagaaaaggcattggtacttggagagtggttgctcaaggcatatgacaggggataaataatattttatatccttcgaagaaagagatgaaggatcagta |
2232 |
T |
|
| Q |
284 |
acctttggtaacaatga |
300 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
2231 |
acttttggcaacaatga |
2215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 336
Target Start/End: Complemental strand, 14279426 - 14279277
Alignment:
| Q |
187 |
gaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaacc |
286 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||| ||||| ||||| || || ||||| | || | ||| | | |||| ||||||||| ||||||| |
|
|
| T |
14279426 |
gaaaaagccatggtacttagacagtggctgctctagacacatgacaggtgacaaacactgctttatctcccttttaaaaaaggaaggaggagcagtaacc |
14279327 |
T |
|
| Q |
287 |
tttggtaacaatgaacaggctcgaatcaaaggtaagggaattattggtaa |
336 |
Q |
| |
|
||||||||||| || | | || |||||||||||| || ||||||||||| |
|
|
| T |
14279326 |
tttggtaacaacgacaaaggtcaaatcaaaggtaaaggtattattggtaa |
14279277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 259478 - 259590
Alignment:
| Q |
185 |
aagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaacaaagtttcctatccttcgtcgaaaaagaaggaggattagtaa |
284 |
Q |
| |
|
|||| |||||| |||| ||||||||||| || || ||||||||||| || || | |||| ||||| |||||||| | |||| || |||||||| |||| |
|
|
| T |
259478 |
aagagaaagccatggtttttggacagtggctgttctagacatatgaccggtgacatacaatgtttcatatccttcataaaaaaggagggaggattggtaa |
259577 |
T |
|
| Q |
285 |
cctttggtaacaa |
297 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
259578 |
catttggaaacaa |
259590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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