View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9048_low_16 (Length: 330)

Name: NF9048_low_16
Description: NF9048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9048_low_16
NF9048_low_16
[»] chr5 (19 HSPs)
chr5 (97-249)||(33002713-33002865)
chr5 (98-249)||(15183914-15184065)
chr5 (96-245)||(8204118-8204267)
chr5 (98-249)||(686417-686567)
chr5 (97-249)||(8040194-8040346)
chr5 (103-249)||(687245-687391)
chr5 (98-249)||(15183088-15183240)
chr5 (97-210)||(12190094-12190207)
chr5 (96-210)||(36626566-36626680)
chr5 (97-210)||(8040380-8040493)
chr5 (103-200)||(33001937-33002034)
chr5 (98-145)||(39950404-39950451)
chr5 (97-146)||(13654932-13654981)
chr5 (97-198)||(33283971-33284072)
chr5 (103-198)||(33283170-33283265)
chr5 (98-133)||(39950445-39950480)
chr5 (98-132)||(686667-686701)
chr5 (103-144)||(39167442-39167483)
chr5 (98-146)||(7625473-7625521)
[»] chr4 (46 HSPs)
chr4 (97-249)||(11417686-11417838)
chr4 (97-249)||(26611180-26611332)
chr4 (97-249)||(21166272-21166424)
chr4 (97-249)||(29651229-29651381)
chr4 (98-249)||(10424123-10424274)
chr4 (98-249)||(36865614-36865765)
chr4 (103-249)||(38143634-38143780)
chr4 (91-210)||(11417873-11417992)
chr4 (99-249)||(26610346-26610497)
chr4 (97-249)||(10424956-10425108)
chr4 (98-249)||(45230365-45230516)
chr4 (98-249)||(45235857-45236008)
chr4 (97-249)||(39522374-39522526)
chr4 (103-249)||(29650420-29650566)
chr4 (98-249)||(21165447-21165598)
chr4 (97-210)||(31836396-31836509)
chr4 (98-249)||(38694848-38695002)
chr4 (98-249)||(31835148-31835299)
chr4 (104-238)||(36864823-36864957)
chr4 (91-245)||(9939118-9939269)
chr4 (97-210)||(9939307-9939420)
chr4 (98-210)||(38694702-38694814)
chr4 (116-210)||(38143506-38143600)
chr4 (98-200)||(39523217-39523319)
chr4 (112-198)||(25970120-25970205)
chr4 (136-200)||(11806129-11806193)
chr4 (112-209)||(36450742-36450839)
chr4 (112-249)||(36451325-36451461)
chr4 (97-146)||(47198604-47198653)
chr4 (103-146)||(3848578-3848621)
chr4 (97-147)||(47377597-47377647)
chr4 (98-151)||(47376852-47376905)
chr4 (98-146)||(25371545-25371593)
chr4 (103-146)||(3847891-3847934)
chr4 (95-146)||(47199395-47199446)
chr4 (98-132)||(10424385-10424419)
chr4 (98-132)||(21166137-21166171)
chr4 (115-193)||(23383327-23383405)
chr4 (98-132)||(29650655-29650689)
chr4 (98-132)||(31836221-31836255)
chr4 (105-147)||(37275095-37275137)
chr4 (98-132)||(45235733-45235767)
chr4 (104-146)||(55159186-55159228)
chr4 (98-147)||(30808621-30808670)
chr4 (95-147)||(23425206-23425258)
chr4 (1-37)||(24455825-24455861)
[»] chr6 (22 HSPs)
chr6 (98-247)||(33480527-33480676)
chr6 (99-249)||(15082398-15082548)
chr6 (98-249)||(15083215-15083366)
chr6 (98-249)||(22579935-22580086)
chr6 (103-249)||(3542819-3542965)
chr6 (98-249)||(33018167-33018318)
chr6 (97-232)||(33018330-33018465)
chr6 (103-249)||(33479701-33479848)
chr6 (103-249)||(22587207-22587353)
chr6 (98-210)||(3542999-3543111)
chr6 (97-202)||(7193337-7193442)
chr6 (103-205)||(22582420-22582522)
chr6 (93-210)||(7193514-7193631)
chr6 (98-147)||(24125972-24126021)
chr6 (98-151)||(24126713-24126766)
chr6 (98-146)||(7531829-7531877)
chr6 (98-132)||(15082638-15082672)
chr6 (98-132)||(22580597-22580631)
chr6 (98-132)||(22587083-22587117)
chr6 (98-132)||(33479938-33479972)
chr6 (97-146)||(7532440-7532489)
chr6 (98-146)||(9574571-9574619)
[»] chr8 (23 HSPs)
chr8 (90-249)||(34992161-34992320)
chr8 (98-249)||(32536708-32536859)
chr8 (105-249)||(37639718-37639862)
chr8 (97-245)||(41859309-41859457)
chr8 (98-249)||(38023624-38023775)
chr8 (97-210)||(5034897-5035010)
chr8 (97-249)||(41859993-41860145)
chr8 (98-210)||(34992015-34992127)
chr8 (103-249)||(32537385-32537528)
chr8 (98-200)||(5035222-5035324)
chr8 (174-249)||(38024428-38024502)
chr8 (96-146)||(61452-61502)
chr8 (98-146)||(1365829-1365877)
chr8 (98-146)||(39254787-39254835)
chr8 (97-133)||(44098434-44098470)
chr8 (218-249)||(37640494-37640525)
chr8 (91-146)||(39255752-39255807)
chr8 (97-146)||(25876520-25876569)
chr8 (97-146)||(44751607-44751656)
chr8 (98-146)||(62240-62288)
chr8 (1-37)||(35881624-35881660)
chr8 (106-170)||(37640538-37640601)
chr8 (98-190)||(43924490-43924582)
[»] chr2 (13 HSPs)
chr2 (98-249)||(21471851-21472002)
chr2 (96-249)||(21471015-21471168)
chr2 (97-249)||(37547997-37548151)
chr2 (97-249)||(38834386-38834538)
chr2 (98-233)||(13134318-13134453)
chr2 (95-209)||(14573936-14574050)
chr2 (97-210)||(38834572-38834685)
chr2 (98-210)||(14573261-14573372)
chr2 (98-197)||(4479651-4479750)
chr2 (92-146)||(5276459-5276513)
chr2 (105-146)||(33433160-33433201)
chr2 (97-133)||(1164789-1164825)
chr2 (91-144)||(45139685-45139738)
[»] chr7 (25 HSPs)
chr7 (98-249)||(17145622-17145774)
chr7 (97-249)||(38071897-38072049)
chr7 (98-249)||(668179-668330)
chr7 (97-249)||(37864204-37864356)
chr7 (97-249)||(4261493-4261645)
chr7 (98-249)||(669000-669151)
chr7 (96-210)||(38778852-38778966)
chr7 (103-249)||(7677422-7677568)
chr7 (98-210)||(38779500-38779611)
chr7 (98-210)||(17145808-17145920)
chr7 (98-210)||(38072227-38072339)
chr7 (103-210)||(4261210-4261317)
chr7 (103-200)||(7677755-7677852)
chr7 (96-194)||(41194511-41194608)
chr7 (98-175)||(37468976-37469053)
chr7 (97-155)||(37468909-37468967)
chr7 (98-198)||(24322299-24322399)
chr7 (97-147)||(29007198-29007248)
chr7 (103-132)||(668420-668449)
chr7 (105-146)||(20890206-20890247)
chr7 (112-189)||(40257759-40257836)
chr7 (112-177)||(42607095-42607160)
chr7 (96-145)||(45887981-45888030)
chr7 (98-190)||(27599211-27599303)
chr7 (97-145)||(47331954-47332002)
[»] chr3 (29 HSPs)
chr3 (103-249)||(32490092-32490238)
chr3 (96-249)||(36750335-36750487)
chr3 (103-249)||(45242071-45242217)
chr3 (97-249)||(41756329-41756481)
chr3 (103-249)||(38922748-38922894)
chr3 (96-249)||(41755497-41755650)
chr3 (98-249)||(19132709-19132860)
chr3 (98-249)||(38923562-38923713)
chr3 (98-249)||(45242884-45243035)
chr3 (103-249)||(3970997-3971143)
chr3 (95-249)||(44686252-44686405)
chr3 (96-249)||(3971799-3971952)
chr3 (96-249)||(3997926-3998079)
chr3 (98-210)||(19132563-19132675)
chr3 (97-249)||(44687060-44687212)
chr3 (98-249)||(52491891-52492037)
chr3 (103-249)||(3998738-3998884)
chr3 (98-204)||(32489946-32490052)
chr3 (100-210)||(36750047-36750157)
chr3 (97-210)||(52492215-52492328)
chr3 (137-249)||(45500512-45500622)
chr3 (98-145)||(31556217-31556264)
chr3 (98-132)||(3971233-3971267)
chr3 (98-132)||(3998614-3998648)
chr3 (98-144)||(17226968-17227014)
chr3 (158-209)||(8427276-8427326)
chr3 (98-132)||(38923438-38923472)
chr3 (98-132)||(45242307-45242341)
chr3 (98-139)||(17227955-17227996)
[»] chr1 (39 HSPs)
chr1 (96-245)||(48972346-48972495)
chr1 (98-249)||(16270207-16270359)
chr1 (96-249)||(51974435-51974588)
chr1 (98-249)||(16271045-16271196)
chr1 (98-249)||(9947995-9948146)
chr1 (98-249)||(51975124-51975275)
chr1 (98-232)||(23440779-23440913)
chr1 (98-247)||(38930312-38930461)
chr1 (98-247)||(48971705-48971854)
chr1 (98-249)||(23440617-23440767)
chr1 (97-210)||(43737914-43738027)
chr1 (98-210)||(9948823-9948935)
chr1 (98-249)||(43737729-43737880)
chr1 (98-245)||(50826992-50827138)
chr1 (112-249)||(6076765-6076901)
chr1 (98-210)||(193850-193961)
chr1 (103-249)||(38931143-38931290)
chr1 (127-192)||(27888700-27888765)
chr1 (112-200)||(6075988-6076076)
chr1 (116-249)||(47334217-47334349)
chr1 (122-200)||(31390769-31390847)
chr1 (135-197)||(40649516-40649578)
chr1 (97-146)||(51987826-51987875)
chr1 (98-198)||(47334848-47334948)
chr1 (97-146)||(35616775-35616824)
chr1 (95-147)||(1013471-1013523)
chr1 (98-146)||(8560839-8560887)
chr1 (98-146)||(51988464-51988512)
chr1 (122-200)||(46133716-46133795)
chr1 (105-147)||(1012554-1012596)
chr1 (142-200)||(12925917-12925975)
chr1 (98-132)||(16270901-16270935)
chr1 (122-200)||(20794313-20794391)
chr1 (98-132)||(38930574-38930608)
chr1 (97-146)||(37822471-37822520)
chr1 (91-144)||(48869762-48869815)
chr1 (135-199)||(17050490-17050554)
chr1 (157-209)||(37725438-37725489)
chr1 (98-146)||(37874064-37874112)
[»] scaffold0311 (1 HSPs)
scaffold0311 (92-249)||(56-214)
[»] scaffold0332 (1 HSPs)
scaffold0332 (98-242)||(9162-9306)
[»] scaffold0041 (3 HSPs)
scaffold0041 (98-200)||(27221-27323)
scaffold0041 (91-187)||(27534-27630)
scaffold0041 (221-249)||(27510-27538)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 33002865 - 33002713
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33002865 aggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 33002766  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||    
T  33002765 caaccactagattatttttttatactatctttcacactctctctttcatgtcc 33002713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 15184065 - 15183914
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 15183966  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       || |||||||||||||||||||||||||||||    
T  15183965 aaccactagattatttttttatgctatctttcacactctctctttcatgtcc 15183914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 8204118 - 8204267
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctc 195  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8204118 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactatc 8204217  T
Q  196 tcaaccactagattannnnnnnatactatctttcacactctctctttcat 245  Q
    |||||||||||||||       ||||||||||||||||||||||||||||    
T  8204218 tcaaccactagattatttttttatactatctttcacactctctctttcat 8204267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 686417 - 686567
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  686417 ggtgccatttaatttgggaaaggagagtt-tttcccaccatgggaaagttgatcatgtccattagattaaatgaggaatatattcctatcatattctctc 686515  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  686516 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 686567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 8040194 - 8040346
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||||||||||| |||||||||||  | |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  8040194 aggtgccatttaatttgggaaaggacagttctttcccatcgtgggaaagttgatcatgtccattagattaaatgaggaatatattcttatcatactctct 8040293  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||| ||||       ||||||||||||||||||||||||||||||||    
T  8040294 caaccactacattatttttttatactatctttcacactctctctttcatgtcc 8040346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 687391 - 687245
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    |||||||||||||||||||||||||||| || | |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  687391 catttaatttgggaaaggagagttcttttccactatggaaaagttgattatgtccattagattaaatgaggaacatattcctatcatactctctcaatca 687292  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||| ||||       ||||||||||||||||||||||||||||||||    
T  687291 ctaaattatttttttatactatctttcacactctctctttcatgtcc 687245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 15183088 - 15183240
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttc-tttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    |||| ||||||||||||||||||||||||  ||||||  |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15183088 ggtgccatttaatttgggaaaggagagtttatttcccatcatgagaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctct 15183187  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||       |||||||||||||||||||| |||||||||||    
T  15183188 caaccactagattatttttttatactatctttcacactctcactttcatgtcc 15183240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 12190207 - 12190094
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12190207 aggtgccatttaatttgggaaaagagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctct 12190108  T
Q  197 caaccactagatta 210  Q
    ||| || |||||||    
T  12190107 caatcattagatta 12190094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 36626680 - 36626566
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctc 195  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||| |||||| ||||||||||||    
T  36626680 taggtgccatttaatttgggaaatgagagttctttcccaccatgggaaagttgatcatgtccgttatattaaataaggaatatattcttatcatactctc 36626581  T
Q  196 tcaaccactagatta 210  Q
    |||||||||||||||    
T  36626580 tcaaccactagatta 36626566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 8040493 - 8040380
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||||||||||| | ||||||||| || |||||||||| |||||||||||||||||||||  |||||||||| ||||||||||||||    
T  8040493 aggtgccatttaatttgggaaaggaaatttctttcccaccgtgggaaagttaatcatgtccattagattaaatagggaacatatttctatcatactctct 8040394  T
Q  197 caaccactagatta 210  Q
    ||||||||||||||    
T  8040393 caaccactagatta 8040380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 33001937 - 33002034
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaac 200  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||||    
T  33001937 catttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgaggaatacattcttatcatattctctcaac 33002034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 39950404 - 39950451
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaag 145  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  39950404 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 39950451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 13654932 - 13654981
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||| ||||||||||||||||||||| ||||||||| |||| |||||||    
T  13654932 aggtgacatttaatttgggaaaggagacttctttcccaccataggaaagt 13654981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 33284072 - 33283971
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||||||||||  |||| | |||| ||||||||||| |  |  || || |||||| |||||||||||| |||  |||||||||||||    
T  33284072 aggtgccatttaatttgggaaaggttagttttatcccaccatgggaaaggtttttttgaccgttagatcaaatgaggaacacatttttatcatactctct 33283973  T
Q  197 ca 198  Q
    ||    
T  33283972 ca 33283971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 33283170 - 33283265
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctca 198  Q
    ||||||||||||||||||  |||| | ||||  |||||||||| |  |  || ||||||||| |||||||||||| |||  |||||||||||||||    
T  33283170 catttaatttgggaaaggttagttttatcccatcatgggaaaggtttttttgaccattagatcaaatgaggaacacatttttatcatactctctca 33283265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 39950480 - 39950445
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccc 133  Q
    |||| |||||||||||||||||||||||||||||||    
T  39950480 ggtgccatttaatttgggaaaggagagttctttccc 39950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 686701 - 686667
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  686701 ggtgccatttaatttgggaaaggagagttctttcc 686667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 39167483 - 39167442
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaa 144  Q
    ||||||||||||||||||||| |||||||||  |||||||||    
T  39167483 catttaatttgggaaaggagacttctttcccatcatgggaaa 39167442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 7625473 - 7625521
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||||||||||||||||||||| | | |||||||||  |||||||||||    
T  7625473 ggtgtcatttaatttgggaaagcaaacttctttcccatcatgggaaagt 7625521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 11417686 - 11417838
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11417686 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 11417785  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||    
T  11417786 caaccactagattatatttttatactatctttcacactctctctttcatgtcc 11417838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 26611332 - 26611180
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26611332 aggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 26611233  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||       ||||||||||| ||||||||||||||||||||    
T  26611232 caaccactagattatttttttatactatcttttacactctctctttcatgtcc 26611180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 21166424 - 21166272
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21166424 aggtgccatttaatttgagaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 21166325  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||    
T  21166324 caaccactagattatttttttatactatctttcacactctctctttcatgtcc 21166272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 29651381 - 29651229
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  29651381 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatctattagattaaatgaggaacatattcctatcatactctct 29651282  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||    
T  29651281 caaccactagattatttttttatactatctttcacactctctctttcatgtcc 29651229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 10424123 - 10424274
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10424123 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctc 10424222  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  10424223 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 10424274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 36865765 - 36865614
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctctc 36865666  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||| ||||||||||||||||||||    
T  36865665 aaccactagattatttttttatactatcttttacactctctctttcatgtcc 36865614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 38143780 - 38143634
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    |||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38143780 catttaatttgggaaatgagagttctttcccaccatgggaaagttggtcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 38143681  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||       ||||||||||||||||||||||||||||||||    
T  38143680 ctagattatttttttatactatctttcacactctctctttcatgtcc 38143634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 91 - 210
Target Start/End: Complemental strand, 11417992 - 11417873
Alignment:
Q  91 aaagataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcata 190  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11417992 aaagatcggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcata 11417893  T
Q  191 ctctctcaaccactagatta 210  Q
    ||||||||||||||||||||    
T  11417892 ctctctcaaccactagatta 11417873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 99 - 249
Target Start/End: Original strand, 26610346 - 26610497
Alignment:
Q  99 gtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctca 198  Q
    |||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26610346 gtgtcatttaatttgggaaatgagagttctttcccaccatgggaaaattgatcatgtccattagattaaatgaggaacatattcctatcatactctctca 26610445  T
Q  199 accactagatta-nnnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||        ||||||||||||||||||||||||||||||||    
T  26610446 accactagattattttttttatactatctttcacactctctctttcatgtcc 26610497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 10425108 - 10424956
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  10425108 aggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagttgatcatatccattagattaaatgaggaatatattcctatcatactctct 10425009  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||       ||| ||||||||||||||||||||||||||||    
T  10425008 caaccactagattatttttttatattatctttcacactctctctttcatgtcc 10424956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 45230365 - 45230516
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||| |||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  45230365 ggtgccatttaattcgggaaaagagagttctttcccaccatgggaaagttgatcatattcattagattaaatgaggaacatattcctatcatactctctc 45230464  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  45230465 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 45230516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 45236008 - 45235857
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  45236008 ggtgccatttaatttggaaaaggagagttctttcccaccatgggaaagttaatcatgtccattagattaaatgaggaacatatttctatcatattctctc 45235909  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  45235908 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 45235857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 39522374 - 39522526
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||||||||||||||||||||||| ||||||||  | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39522374 aggtgtcatttaatttgggaaaggatagttctttttcaccatgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctct 39522473  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||       |||||||||||| ||||| |||||||||||||    
T  39522474 caaccactagattatttttttatactatctttcgcactccctctttcatgtcc 39522526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 29650420 - 29650566
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    |||||||||||||||| ||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650420 catttaatttgggaaatgagagttcttttccatcttgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 29650519  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||       ||||||||||||||||||||| ||||||||||    
T  29650520 ctagattatttttttatactatctttcacactctctttttcatgtcc 29650566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 21165447 - 21165598
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||| | ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  21165447 ggtgccatttaatttgggaaagaatagttctttcccaccatgagaaagttgatcatgtccatttgattaaatgaggaacatatttctatcatactctctc 21165546  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||| ||||||||||||||||    
T  21165547 aaccactagattaattttttatactatctttcacagtctctctttcatgtcc 21165598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 31836509 - 31836396
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31836509 aggtgccatttaatttgagaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctct 31836410  T
Q  197 caaccactagatta 210  Q
    ||||||||||||||    
T  31836409 caaccactagatta 31836396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 38695002 - 38694848
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  38695002 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagttgatcatgtctattagattaaatgaggaaaatattcatatcatactctctc 38694903  T
Q  198 aaccactagattannnnnnna---tactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       |   |||||||||||||||||||||||||||||||    
T  38694902 aaccactagattatttttttatactactatctttcacactctctctttcatgtcc 38694848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 31835148 - 31835299
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||  |||| | ||||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  31835148 ggtgccatttaatttgaaaaagtatagttctttcccaccataggaaagttgattatgtccattagattaaacgaggaacatattcctatcatactctctc 31835247  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  31835248 aaccactagattatctttttatactatctttcacactctctctttcatgtcc 31835299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 36864823 - 36864957
Alignment:
Q  104 atttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccac 203  Q
    |||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36864823 atttaatttgggaaaggagagttctttctcaccatgagaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactctctcaaccac 36864922  T
Q  204 tagattannnnnnnatactatctttcacactctct 238  Q
    |||||||       ||||||||||||| |||||||    
T  36864923 tagattatttttttatactatctttcatactctct 36864957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 91 - 245
Target Start/End: Original strand, 9939118 - 9939269
Alignment:
Q  91 aaagataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcata 190  Q
    |||| |||||||||||||||||||||||| |||||||||| |    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  9939118 aaagttaggtgtcatttaatttgggaaagtagagttcttttct---atgggaaagttgatcatgtccattagattaaatgagaaacatattcttatcata 9939214  T
Q  191 ctctctcaaccactagattannnnnnnatactatctttcacactctctctttcat 245  Q
    ||||||||||||||||||||       ||||||||||||||| ||||||||||||    
T  9939215 ctctctcaaccactagattatttttttatactatctttcacattctctctttcat 9939269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 9939420 - 9939307
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9939420 aggtgccatttaatttgagaaaggggagttctttcccaccatggaaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 9939321  T
Q  197 caaccactagatta 210  Q
    ||||||||| ||||    
T  9939320 caaccactatatta 9939307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 38694702 - 38694814
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||| ||||||||||||||||||  ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  38694702 ggtgccatttaatttggaaaaggagagttctttcccagcatggaaaagttgatcatattcattagattaaatgaggaacatattcctatcatactctctc 38694801  T
Q  198 aaccactagatta 210  Q
    |||||||||||||    
T  38694802 aaccactagatta 38694814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 38143506 - 38143600
Alignment:
Q  116 aaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagatta 210  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38143506 aaaggagagttcttttccaccataggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagatta 38143600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 39523319 - 39523217
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||   || |||||||||||    
T  39523319 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagttgatcatgtccattagattaaatgaggaatacatctttaccatactctctc 39523220  T
Q  198 aac 200  Q
    |||    
T  39523219 aac 39523217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 25970120 - 25970205
Alignment:
Q  112 tgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctca 198  Q
    ||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||| ||   |||||||||||||||    
T  25970120 tgggaaaggggagttgtttcccaccatgggaaagttgat-atgtccattagattaaatgagaaacaaatctttatcatactctctca 25970205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 11806129 - 11806193
Alignment:
Q  136 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaac 200  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||  |||| ||||||||||||    
T  11806129 catgggaaagttaatcatgtccattagattaaatgaggaacacatttttatcctactctctcaac 11806193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 36450742 - 36450839
Alignment:
Q  112 tgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagatt 209  Q
    ||||||||| ||||| ||| || |||||||||||||||| ||||||||| ||||||||||| |||| ||   |||| ||||||||||  |||||||||    
T  36450742 tgggaaaggggagttgttttccaccatgggaaagttgattatgtccattggattaaatgagtaacaaatctttatcctactctctcatacactagatt 36450839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 36451461 - 36451325
Alignment:
Q  112 tgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattan 211  Q
    ||||||||  ||||| |||| | |||||| ||||||||| ||||||||||||||||||||  |||| || | |||| ||||||||||| ||||||||||     
T  36451461 tgggaaagaggagttgtttctcaccatggaaaagttgattatgtccattagattaaatgaaaaacaaatccttatcctactctctcaa-cactagattat 36451363  T
Q  212 nnnnnnatactatctttcacactctctctttcatgtcc 249  Q
          | |||||||| |||  ||||||||||||||||    
T  36451362 tgttttacactatcttccaccatctctctttcatgtcc 36451325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 47198604 - 47198653
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||||||||    
T  47198604 aggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagt 47198653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 3848621 - 3848578
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  3848621 catttaatttgggaaaggagacttctttcccaccatgggaaagt 3848578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 47377647 - 47377597
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagtt 147  Q
    ||||| |||||||||||||||||| ||||| |||||| |||||||||||||    
T  47377647 aggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagtt 47377597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 47376852 - 47376905
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatc 151  Q
    |||| |||||||||||||||||| ||||| ||||||  ||||||||||||||||    
T  47376852 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagttgatc 47376905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 25371593 - 25371545
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||| ||||||||||||||||||||| ||||||||| ||||| ||||||    
T  25371593 ggtgacatttaatttgggaaaggagacttctttcccaccatgagaaagt 25371545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 3847891 - 3847934
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||||||||||||||||||| || |||||| ||||||||||||    
T  3847891 catttaatttgggaaaggagacttttttcccaccatgggaaagt 3847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 47199446 - 47199395
Alignment:
Q  95 ataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||||| |||||||||||||||| |||| ||||||||| |||| |||||||    
T  47199446 ataggtggcatttaatttgggaaaagagacttctttcccaccataggaaagt 47199395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 10424419 - 10424385
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  10424419 ggtgccatttaatttgggaaaggagagttctttcc 10424385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 21166137 - 21166171
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  21166137 ggtgccatttaatttgggaaaggagagttctttcc 21166171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 23383327 - 23383405
Alignment:
Q  115 gaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactc 193  Q
    |||||||||||| |||||| ||||||||||||| ||  | |||||| ||| |||||| ||||| | || ||||||||||    
T  23383327 gaaaggagagttgtttcccaccatgggaaagttaattttatccattcgatcaaatgaagaacacactcttatcatactc 23383405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 29650689 - 29650655
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  29650689 ggtgccatttaatttgggaaaggagagttctttcc 29650655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 31836221 - 31836255
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  31836221 ggtgccatttaatttgggaaaggagagttctttcc 31836255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 37275095 - 37275137
Alignment:
Q  105 tttaatttgggaaaggagagttctttccccccatgggaaagtt 147  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||    
T  37275095 tttaatttgggaaaggagacttctttcccaccatgagaaagtt 37275137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 45235733 - 45235767
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  45235733 ggtgccatttaatttgggaaaggagagttctttcc 45235767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 55159186 - 55159228
Alignment:
Q  104 atttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||||||||||||||||||| ||||||||  ||||||||||||    
T  55159186 atttaatttgggaaaggagacttctttcctaccatgggaaagt 55159228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 30808621 - 30808670
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagtt 147  Q
    |||| |||||||  ||||||||||||||| |||||| |||||||||||||    
T  30808621 ggtggcatttaaaatgggaaaggagagttgtttcccaccatgggaaagtt 30808670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 23425258 - 23425206
Alignment:
Q  95 ataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagtt 147  Q
    ||||||| |||||| | |||||| |||||||| |||||| |||||||||||||    
T  23425258 ataggtggcatttagtatgggaatggagagttgtttcccaccatgggaaagtt 23425206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24455825 - 24455861
Alignment:
Q  1 tctatagtagaatcttcatgcaaaagtgaacaccaaa 37  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  24455825 tctatagtagaatcttcatgcaacagtaaacaccaaa 24455861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 33480676 - 33480527
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 33480577  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgt 247  Q
    |||||||||||||       ||||||||||||||||||||||||||||||    
T  33480576 aaccactagattatttttttatactatctttcacactctctctttcatgt 33480527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 99 - 249
Target Start/End: Original strand, 15082398 - 15082548
Alignment:
Q  99 gtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctca 198  Q
    |||||||||||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15082398 gtgtcatttaatttgggaaatgagagttcttttccatcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctca 15082497  T
Q  199 accactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||    
T  15082498 accactagattatttttttatactatctttcacactctctctttcatgtcc 15082548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 15083366 - 15083215
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  15083366 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagttgatcatatctattagattaaatgaggaacatattcctatcatactctctc 15083267  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  15083266 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 15083215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 22579935 - 22580086
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22579935 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctctc 22580034  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    || ||||||||||       ||||||||||||||||||||||||||||||||    
T  22580035 aatcactagattatttttttatactatctttcacactctctctttcatgtcc 22580086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 3542819 - 3542965
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3542819 catttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgttcattagattaaatgaggaacatattcctatcatactctctcaacca 3542918  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||       | ||||||||||||||||||||||||||||||    
T  3542919 ctagattatttttttaaactatctttcacactctctctttcatgtcc 3542965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 33018167 - 33018318
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  33018167 ggtgccatttaatttgggaaaggagagttctttcccatcattggaaagttgatcatgtccattagattaaatgaggaacatatttttatcatactctctc 33018266  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||| |||||||       ||||||||||||||||||||||||||||||||    
T  33018267 aaccattagattatttttttatactatctttcacactctctctttcatgtcc 33018318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 33018465 - 33018330
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33018465 aggtgtcgtttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctct 33018366  T
Q  197 caaccactagattannnnnnnatactatctttcaca 232  Q
    ||||||||||||||       |||||||||||||||    
T  33018365 caaccactagattatttttttatactatctttcaca 33018330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 33479701 - 33479848
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33479701 catttaatttgggaaaggagagttatttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaacca 33479800  T
Q  203 ctagatta-nnnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||        ||||||||||||||||||||| ||||||||||    
T  33479801 ctagattattttttttatactatctttcacactctctatttcatgtcc 33479848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 22587353 - 22587207
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||    
T  22587353 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatatttctattatactcactcaatca 22587254  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||       |||||||||||||||||||||||||| |||||    
T  22587253 ctagattatttttttatactatctttcacactctctctttcctgtcc 22587207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 3543111 - 3542999
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 3543012  T
Q  198 aaccactagatta 210  Q
    |||||||||||||    
T  3543011 aaccactagatta 3542999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 7193337 - 7193442
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  7193337 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatctccattagattaaatgaggaacatattcttatcatactctct 7193436  T
Q  197 caacca 202  Q
    ||||||    
T  7193437 caacca 7193442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 22582522 - 22582420
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||    
T  22582522 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatatttctattatactcactcaatca 22582423  T
Q  203 cta 205  Q
    |||    
T  22582422 cta 22582420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 7193631 - 7193514
Alignment:
Q  93 agataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatact 192  Q
    ||||||||| ||||||||||| ||||| |||||||||| ||  |||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  7193631 agataggtgccatttaatttgagaaagtagagttcttttccatcatgggaaagttgatcatatccattagattaaatgaggaatatatttctatcatact 7193532  T
Q  193 ctctcaaccactagatta 210  Q
    ||||||||||||||||||    
T  7193531 ctctcaaccactagatta 7193514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 24125972 - 24126021
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagtt 147  Q
    |||| |||||||||||||||||| ||||| |||||| |||||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaagtt 24126021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 24126766 - 24126713
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatc 151  Q
    |||| |||||||||||||||||| ||||| ||||||  ||||||||||||||||    
T  24126766 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagttgatc 24126713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 7531829 - 7531877
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||| ||||||||||||||||||||| ||||||||  ||||||||||||    
T  7531829 ggtggcatttaatttgggaaaggagacttctttcctaccatgggaaagt 7531877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 15082672 - 15082638
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  15082672 ggtgccatttaatttgggaaaggagagttctttcc 15082638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 22580597 - 22580631
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  22580597 ggtgccatttaatttgggaaaggagagttctttcc 22580631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 22587083 - 22587117
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  22587083 ggtgccatttaatttgggaaaggagagttctttcc 22587117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 33479972 - 33479938
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  33479972 ggtgccatttaatttgggaaaggagagttctttcc 33479938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 7532489 - 7532440
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||| ||||||||||||||||||||| ||||||  | ||||||||||||    
T  7532489 aggtggcatttaatttgggaaaggagacttctttttcaccatgggaaagt 7532440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 9574619 - 9574571
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||| ||||||| ||||||||||||| ||||||||| |||| |||||||    
T  9574619 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaagt 9574571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 90 - 249
Target Start/End: Complemental strand, 34992320 - 34992161
Alignment:
Q  90 caaagataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcat 189  Q
    |||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34992320 caaagagaggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcat 34992221  T
Q  190 actctctcaaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||||||||||||    
T  34992220 actctctcaaccactaaattatttttttatactatctttcacactctctctttcatgtcc 34992161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 32536708 - 32536859
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32536708 ggtgccatttaatttaggaaatgagagttctttcccaccatgggaaagttgatcatgtccattagattaaatggggaacatattcctatcatactctctc 32536807  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  32536808 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 32536859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 105 - 249
Target Start/End: Original strand, 37639718 - 37639862
Alignment:
Q  105 tttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccact 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  37639718 tttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatattcattagattaaatgaggaacatattcctatgatactctctcaaccact 37639817  T
Q  205 agattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||       ||||||||||||||||||||||||||||||||    
T  37639818 agattatttttttatactatctttcacactctctctttcatgtcc 37639862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 245
Target Start/End: Original strand, 41859309 - 41859457
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||    
T  41859309 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccgttagattaaatgaagaacatattcatatcatactctct 41859408  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcat 245  Q
    ||||||||||||||       ||||||||||||||||||||||||||||    
T  41859409 caaccactagattatttttttatactatctttcacactctctctttcat 41859457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 38023624 - 38023775
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||||||||||||||||||||||||| |||||| ||  ||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  38023624 ggtgtcatttaatttgggaaaggagaattcttttccatcatggaaaagttgatcatgttcattagattaaatgaggaacatatttctatcatactctctc 38023723  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  38023724 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 38023775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 5034897 - 5035010
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  5034897 aggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagttgatcatgtccattagattgaatgaggaacatattcatatcatactctct 5034996  T
Q  197 caaccactagatta 210  Q
    ||||||||||||||    
T  5034997 caaccactagatta 5035010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 41860145 - 41859993
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||||||||| |||||| |||    | |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  41860145 aggtgccatttaatttgggaaagaagagttattttttactatggaaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactttct 41860046  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||| ||||       ||||||||||||||||||||||||||||||||    
T  41860045 caaccactatattatttttttatactatctttcacactctctctttcatgtcc 41859993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 34992015 - 34992127
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||| ||||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34992015 ggtgccatttaatttgggaaacgagagttattttccaccatggaaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctc 34992114  T
Q  198 aaccactagatta 210  Q
    |||||||| ||||    
T  34992115 aaccactaaatta 34992127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 32537528 - 32537385
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    |||||||||||||||| ||||||||||| ||   ||| ||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  32537528 catttaatttgggaaatgagagttcttttcc---atgagaaagttaatcatgtccattatattaaataaggaacatattcttatcatactctctcaacca 32537432  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||       |||||||||||| |||||||||||||||||||    
T  32537431 ctagattatttttttatactatctttcgcactctctctttcatgtcc 32537385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 5035324 - 5035222
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||    
T  5035324 ggtgccatttaatttgggaaaggagagttcttttccaccataggaaagttgatcatgtccattagattaaatgaggaatacattcttatcatactctctc 5035225  T
Q  198 aac 200  Q
    |||    
T  5035224 aac 5035222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 38024502 - 38024428
Alignment:
Q  174 aacatattcctatcatactctctcaaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  38024502 aacatatttctatcatactctctcaaccactagatta-ttttttatactatctttcacactctctctttcatgtcc 38024428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 61452 - 61502
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||||||||||    
T  61452 taggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 61502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 1365829 - 1365877
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||||||    
T  1365829 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 1365877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 39254787 - 39254835
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||| ||||||||||||||||||||| ||||||||| |||| |||||||    
T  39254787 ggtggcatttaatttgggaaaggagacttctttcccaccataggaaagt 39254835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 44098470 - 44098434
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccc 133  Q
    ||||| |||||||||||||||||||||||||||||||    
T  44098470 aggtgccatttaatttgggaaaggagagttctttccc 44098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 249
Target Start/End: Complemental strand, 37640525 - 37640494
Alignment:
Q  218 atactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||||||||||||||||||||    
T  37640525 atactatctttcacactctctctttcatgtcc 37640494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 39255807 - 39255752
Alignment:
Q  91 aaagataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||| |||||| ||||||| |||||||| |||| ||||||||| ||||||||||||    
T  39255807 aaagttaggtggcatttaacttgggaaatgagacttctttcccaccatgggaaagt 39255752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 25876520 - 25876569
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||| ||||||||||||||||| ||| || |||||| ||||||||||||    
T  25876520 aggtgccatttaatttgggaaagaagatttttttcccaccatgggaaagt 25876569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 44751607 - 44751656
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||| ||||||| ||||||||||||| |||||||||  |||||||||||    
T  44751607 aggtggcatttaacttgggaaaggagacttctttcccatcatgggaaagt 44751656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 62288 - 62240
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||| ||||||||||| ||||||||| ||||||||| |||| |||||||    
T  62288 ggtgacatttaatttgagaaaggagacttctttcccaccataggaaagt 62240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35881624 - 35881660
Alignment:
Q  1 tctatagtagaatcttcatgcaaaagtgaacaccaaa 37  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  35881624 tctatagtagaatcttcatgcaacagtaaacaccaaa 35881660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 37640601 - 37640538
Alignment:
Q  106 ttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatg 170  Q
    ||||||||||||||||||||| |||  | | ||||| |||||||||||||  |||||||||||||    
T  37640601 ttaatttgggaaaggagagtttttttacactatggg-aagttgatcatgtttattagattaaatg 37640538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 43924490 - 43924582
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcata 190  Q
    |||| ||||||||||||||||||  |||| |||||| ||||||||||| | ||  || || |||||||||||   |||||||||  |||||||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcata 43924582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 21472002 - 21471851
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctctc 21471903  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  21471902 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 21471851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 21471015 - 21471168
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctc 195  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21471015 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaagaacatattcctatcatactctc 21471114  T
Q  196 tcaaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||| |||||||||||       ||||||||||||||||||||||||||||||||    
T  21471115 tcagccactagattatttttttatactatctttcacactctctctttcatgtcc 21471168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 37547997 - 37548151
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37547997 aggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 37548096  T
Q  197 caaccactagattannnnnnnatactatctttcacactct--ctctttcatgtcc 249  Q
    ||||||||||||||       |||| ||||||||||||||  |||||||||||||    
T  37548097 caaccactagattatttttttataccatctttcacactctctctctttcatgtcc 37548151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 38834386 - 38834538
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| |||||||||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  38834386 aggtgccatttaatttgggaaaggagggtactttcccaccacgggaaagttgatcatgtccattagattaaatgaggaacatatttttatcatactctct 38834485  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||    
T  38834486 caaccactagattatttttttatactatctttcacactctctctttcatgtcc 38834538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 13134318 - 13134453
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||    
T  13134318 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaagttgatcatgtccattaaattaaatgaggaacatatttctatcatactctatc 13134417  T
Q  198 aaccactagattannnnnnnatactatctttcacac 233  Q
    |||||||||||||       ||||||||||||||||    
T  13134418 aaccactagattatttttttatactatctttcacac 13134453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 14574050 - 14573936
Alignment:
Q  95 ataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactct 194  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||  ||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  14574050 ataggtgccatttaatttgggaaaggagagttctttcccaccataagaaagttgatcatatccattagattaaatgagaaacatattcctatcatactct 14573951  T
Q  195 ctcaaccactagatt 209  Q
    |||||||||||||||    
T  14573950 ctcaaccactagatt 14573936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 38834685 - 38834572
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| |||||||||||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  38834685 aggtgccatttaatttgggaaaggagagttttttcctaccgtgggaaagttgatcatgtccattagattaaatgaagaacatatttctatcatactctct 38834586  T
Q  197 caaccactagatta 210  Q
    ||||||||||||||    
T  38834585 caaccactagatta 38834572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 14573261 - 14573372
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaatatatttttatcatactctctc 14573360  T
Q  198 aaccactagatta 210  Q
    || ||||||||||    
T  14573361 aa-cactagatta 14573372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 4479750 - 4479651
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4479750 ggtgccatttaatttgggaaaggagagttctttctcaccatgggaaagttaatcatgtccattagattaaatgaggaacatattcttatcatactctctc 4479651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 5276459 - 5276513
Alignment:
Q  92 aagataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  5276459 aagagaggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagt 5276513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 33433201 - 33433160
Alignment:
Q  105 tttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  33433201 tttaatttgagaaaggagagttctttcccaccatgggaaagt 33433160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 1164825 - 1164789
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccc 133  Q
    ||||| |||||||||||||||||||||||||||||||    
T  1164825 aggtgccatttaatttgggaaaggagagttctttccc 1164789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 45139685 - 45139738
Alignment:
Q  91 aaagataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaa 144  Q
    |||| |||||| ||||||||||||||||||||| |||||| ||  |||||||||    
T  45139685 aaagttaggtggcatttaatttgggaaaggagacttcttttccatcatgggaaa 45139738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 17145622 - 17145774
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 17145721  T
Q  198 aaccactagatta-nnnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||        ||||||||||||||||||||||||||||||||    
T  17145722 aaccactagattattttttttatactatctttcacactctctctttcatgtcc 17145774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 38071897 - 38072049
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| |||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38071897 aggtgccatttaatttaggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 38071996  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||    
T  38071997 caaccactagattatttttttatactatctttcacactctctctttcatgtcc 38072049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 668179 - 668330
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaagaacatattcctatcatactctctc 668278  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||| ||||||       ||||||||||||||||||||||||||||||||    
T  668279 aaccaccagattatttttttatactatctttcacactctctctttcatgtcc 668330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 37864356 - 37864204
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37864356 aggtgccatttaatttgggaaataagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactctct 37864257  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||    
T  37864256 caaccactagattatttttttatactatctttcacactctctctttcatgtcc 37864204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 4261645 - 4261493
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  4261645 aggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagttgatcatctccattagattaaatgaggaacatatttctatcatactctct 4261546  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||| |||||||       ||||||||||||||||||||||||||||||||    
T  4261545 caaccattagattatttttttatactatctttcacactctctctttcatgtcc 4261493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 669151 - 669000
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||| ||||||| |||||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  669151 ggtgccatttaatttgggaaatgagagttttttcccaccataggaaagttgatcatatccattagatcaaatgaggaacatattcctatcatactctctc 669052  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  669051 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 669000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 38778852 - 38778966
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctc 195  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  38778852 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccattagattaaatgaggagcatattcctatcatactctc 38778951  T
Q  196 tcaaccactagatta 210  Q
    |||||||||||||||    
T  38778952 tcaaccactagatta 38778966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 7677422 - 7677568
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    ||||||||||||||||||||| ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7677422 catttaatttgggaaaggagaattctttcccaccatgaaaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaacca 7677521  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||| ||||       ||||||||||| ||||||||||||||||||||    
T  7677522 ctaaattatttttttatactatcttttacactctctctttcatgtcc 7677568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 38779611 - 38779500
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaatatattcttataatactctctc 38779512  T
Q  198 aaccactagatta 210  Q
    || ||||||||||    
T  38779511 aa-cactagatta 38779500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 17145920 - 17145808
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||    | |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  17145920 ggtgccatttaatttgggaaaggagagttcttttttactatgggaaagttgatcatgtccattagattaaatgaataacatattcctatcatactctctc 17145821  T
Q  198 aaccactagatta 210  Q
    |||||||||||||    
T  17145820 aaccactagatta 17145808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 38072339 - 38072227
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||    
T  38072339 ggtgccatttaatttgggaaatgagagttcttttccaccatgggaaagttgatcatgtccattagattaaatgatgaatacattcttatcatactctctc 38072240  T
Q  198 aaccactagatta 210  Q
    |||||||||||||    
T  38072239 aaccactagatta 38072227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 4261210 - 4261317
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    |||||||||| ||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||    
T  4261210 catttaatttaggaaaggagagttcttttctaccatgggaaagttgatcatgtccattagattaaatgaggaatacattcttatcatactctctcaacca 4261309  T
Q  203 ctagatta 210  Q
    ||||||||    
T  4261310 ctagatta 4261317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 7677852 - 7677755
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaac 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||    
T  7677852 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgttcattagattaaatgaggaacacattcttatcatattctctcaac 7677755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 41194511 - 41194608
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactct 194  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||    
T  41194511 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttaatcatgtccattaaatt-aatgaggaacatattcttatcatactct 41194608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 37469053 - 37468976
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaa 175  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaa 37468976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 37468909 - 37468967
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgt 155  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37468909 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgt 37468967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 24322399 - 24322299
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||  |||| | |||| ||||||||||| |  |  || || |||||| |||||||||||| |||  ||||||||||||||    
T  24322399 ggtgccatttaatttgggaaaggttagttttatcccaccatgggaaaggtttttttgaccgttagatcaaatgaggaacacatttttatcatactctctc 24322300  T
Q  198 a 198  Q
    |    
T  24322299 a 24322299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 29007248 - 29007198
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagtt 147  Q
    ||||||||||||||||||||||||   ||| |||||| |||||||||||||    
T  29007248 aggtgtcatttaatttgggaaaggcttgttttttcccaccatgggaaagtt 29007198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 132
Target Start/End: Complemental strand, 668449 - 668420
Alignment:
Q  103 catttaatttgggaaaggagagttctttcc 132  Q
    ||||||||||||||||||||||||||||||    
T  668449 catttaatttgggaaaggagagttctttcc 668420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 20890206 - 20890247
Alignment:
Q  105 tttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||||||||||||||| |||| |||||| ||||||||||||    
T  20890206 tttaatttgggaaaggacagttttttcccaccatgggaaagt 20890247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 40257836 - 40257759
Alignment:
Q  112 tgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcat 189  Q
    ||||||| | ||||| |||||| ||||| |||||||| |  |||||||||||| ||||||| |||| |||| ||||||    
T  40257836 tgggaaatgggagttgtttcccaccatgagaaagttgtttttgtccattagatcaaatgagaaacacattcttatcat 40257759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 42607095 - 42607160
Alignment:
Q  112 tgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaaca 177  Q
    ||||||||| || || |||||| |||||||||||||| |  |||||||||||| ||||||| ||||    
T  42607095 tgggaaaggggaattgtttcccaccatgggaaagttgtttttgtccattagatcaaatgagaaaca 42607160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 45888030 - 45887981
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaag 145  Q
    |||||| ||||||||||||||||||  |||| |||||| |||||||||||    
T  45888030 taggtggcatttaatttgggaaaggctagttttttcccaccatgggaaag 45887981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 27599211 - 27599303
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcata 190  Q
    |||| |||||||  ||||||||| ||||| |||||| ||||||||||||| |   || |||||||||||| | | ||||| |||| |||||||    
T  27599211 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcata 27599303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 47332002 - 47331954
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaag 145  Q
    ||||| ||||||||||||||||||  |||| |||||| |||||||||||    
T  47332002 aggtgacatttaatttgggaaaggctagttttttcccaccatgggaaag 47331954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 32490238 - 32490092
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32490238 catttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 32490139  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||       |||||||||||||||||| |||||||||||||    
T  32490138 ctagattatttttttatactatctttcacactccctctttcatgtcc 32490092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 36750487 - 36750335
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctc 195  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  36750487 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgttcattagattaaatgaggaacatatttctatcatactctc 36750388  T
Q  196 tcaaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||    
T  36750387 tcaaccactagatta-ttttttatactatctttcacactctctctttcatgtcc 36750335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 45242071 - 45242217
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    |||||||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45242071 catttaatttgggaaatgagagttcttttccatcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 45242170  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||       ||||||||||||||||||||||||||||||||    
T  45242171 ctagattatttttttatactatctttcacactctctctttcatgtcc 45242217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 41756481 - 41756329
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||||||||||| || ||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41756481 aggtgtcatttaagttaggaaaggagagttctttcccatcatgggaaagttgatcatgttcattagattaaatgaggaacatattcctatcatactctct 41756382  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||| |||||||       ||||||||||||||||||||||||||||||||    
T  41756381 caaccattagattatttttttatactatctttcacactctctctttcatgtcc 41756329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 38922748 - 38922894
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  38922748 catttaatttgggaaaggagagttatttcctaccatgggaaagttgatcatatccattagattaaatgagaaacatattcctatcatactctctcaacca 38922847  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||       ||||||||||||||||||||||||||||||||    
T  38922848 ctagattatttttttatactatctttcacactctctctttcatgtcc 38922894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 41755497 - 41755650
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctc 195  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  41755497 taggtgtcatttaatttgggaaaggagagttttttcccaccatgagaaaattgatcatgttcattagattaaatgaggaacatatttctatcatactctc 41755596  T
Q  196 tcaaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||| ||||       ||||||||||||||||||||||||||||||||    
T  41755597 tcaaccactatattatttttttatactatctttcacactctctctttcatgtcc 41755650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 19132860 - 19132709
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19132860 ggtgccatttaatttgggaaaggaaagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcttatcatactctctc 19132761  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||| |||||       ||| ||||||||||| ||||||||||||||||    
T  19132760 aaccactggattatttttttatattatctttcacattctctctttcatgtcc 19132709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 38923713 - 38923562
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||| |||||||||||||| |||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  38923713 ggtgccatttaatttgggaaatgagagttctttcccaccatggaaaagttgataatgttcattagattaaatgaggaacatatttctatcatactctctc 38923614  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  38923613 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 38923562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 45243035 - 45242884
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||| |||||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  45243035 ggtgccatttaatttgggaaagaagagttcttttccaccatgggaaagttgatcatatctattagattaaatgaggaacatattcctatcatactctctc 45242936  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||| ||||||||||||||||||||||||||||    
T  45242935 aaccactagattatttttttatattatctttcacactctctctttcatgtcc 45242884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 3970997 - 3971143
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    |||||||||||||||| ||||||| |||  | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3970997 catttaatttgggaaatgagagttttttttcaccatggaaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 3971096  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    || |||||       ||||||||||||||||||||||||||||||||    
T  3971097 cttgattatttttttatactatctttcacactctctctttcatgtcc 3971143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 44686252 - 44686405
Alignment:
Q  95 ataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactct 194  Q
    ||||||| |||||||||||| ||||||||||| ||| | || ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44686252 ataggtgccatttaatttggaaaaggagagtttttttcacc-atgagaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactct 44686350  T
Q  195 ctcaaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  44686351 ctcaaccactagattatttttttatactatctttcacactctctctttcatgtcc 44686405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 3971952 - 3971799
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctc 195  Q
    |||||| |||||||||| ||||| || |||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  3971952 taggtgccatttaatttaggaaatgaaagttctttcccatgatgggaaagttgatcatatccattagattaaatgaggaacatatttctatcatactctc 3971853  T
Q  196 tcaaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||    
T  3971852 tcaaccactagattatttttttatactatctttcacactctctctttcatgtcc 3971799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 3997926 - 3998079
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctc 195  Q
    |||||| |||||||||| ||||| || |||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  3997926 taggtgccatttaatttaggaaatgaaagttctttcccatgatgggaaagttgatcatatccattagattaaatgaggaacatatttctatcatactctc 3998025  T
Q  196 tcaaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||    
T  3998026 tcaaccactagattatttttttatactatctttcacactctctctttcatgtcc 3998079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 19132563 - 19132675
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19132563 ggtgccatttaatttgggaaaggagagttctttcctactatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 19132662  T
Q  198 aaccactagatta 210  Q
    |||||||||||||    
T  19132663 aaccactagatta 19132675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 44687212 - 44687060
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| ||||||||||||||||||||| |||||| || |||||| |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  44687212 aggtgccatttaatttgggaaaggagaattcttttccaccatggaaaagttgatcatattcattagattaaatgaggaaaatattcctatcatactctct 44687113  T
Q  197 caaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||| |||||||       ||||||||||||||||||||||||||||||||    
T  44687112 caaccattagattatttttttatactatctttcacactctctctttcatgtcc 44687060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 52491891 - 52492037
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||     ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  52491891 ggtgccatttaatttgggaaaggagagttctttcc-----tggaaaagttgatcatgtccattagattaaataaggaacatatttctatcatactctctc 52491985  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  52491986 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 52492037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 3998884 - 3998738
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    |||||||||||||||| ||||||| |||  | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3998884 catttaatttgggaaatgagagttttttttcaccatggaaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 3998785  T
Q  203 ctagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    || |||||       ||||||||||| ||||||||||||||||||||    
T  3998784 cttgattatttttttatactatcttttacactctctctttcatgtcc 3998738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 32489946 - 32490052
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  32489946 ggtgccatttaatttgggaaaggagaattcttttccaccatgggaaagttgatcatgtccattagattaaataaggaacatatttctatcatactctctc 32490045  T
Q  198 aaccact 204  Q
    |||||||    
T  32490046 aaccact 32490052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 100 - 210
Target Start/End: Original strand, 36750047 - 36750157
Alignment:
Q  100 tgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaa 199  Q
    ||||||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||||||||||| | |||| ||||||||||||||||    
T  36750047 tgtcatttaatttgggaaaggagagttcttttccaccatggaaaagttgatcatgttcattagattaaatgaggaatacattcttatcatactctctcaa 36750146  T
Q  200 ccactagatta 210  Q
    |||||||||||    
T  36750147 ccactagatta 36750157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 52492328 - 52492215
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    |||||||||||||||||||||| ||||||||||| || |||||| ||||||| |||||||||||||||||||||||||| | |||| |||||||||||||    
T  52492328 aggtgtcatttaatttgggaaatgagagttcttttccaccatggaaaagttgttcatgtccattagattaaatgaggaatacattcttatcatactctct 52492229  T
Q  197 caaccactagatta 210  Q
    ||||||||||||||    
T  52492228 caaccactagatta 52492215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 45500512 - 45500622
Alignment:
Q  137 atgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattannnnnnnatactatctttcacactct 236  Q
    |||||||||||||| |||||||||||||||||||||||||| |||| |||  ||||||||||| ||||||||||       || ||||||| ||| ||||    
T  45500512 atgggaaagttgattatgtccattagattaaatgaggaacacattcttattctactctctcaa-cactagattattgttttat-ctatcttccaccctct 45500609  T
Q  237 ctctttcatgtcc 249  Q
    |||||||||||||    
T  45500610 ctctttcatgtcc 45500622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 31556264 - 31556217
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaag 145  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||||    
T  31556264 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 31556217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 3971267 - 3971233
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||||||||||||||||||||||||||||||||||    
T  3971267 ggtgtcatttaatttgggaaaggagagttctttcc 3971233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 3998614 - 3998648
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||||||||||||||||||||||||||||||||||    
T  3998614 ggtgtcatttaatttgggaaaggagagttctttcc 3998648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 17226968 - 17227014
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaa 144  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||||    
T  17226968 ggtggcatttaatttgggaaaggagatttctttcccaccatgggaaa 17227014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 8427276 - 8427326
Alignment:
Q  158 attagattaaatgaggaacatattcctatcatactctctcaaccactagatt 209  Q
    |||||||||||||| |||||||||| |||||| ||||||||| |||||||||    
T  8427276 attagattaaatgaagaacatattcttatcatgctctctcaa-cactagatt 8427326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 38923438 - 38923472
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  38923438 ggtgccatttaatttgggaaaggagagttctttcc 38923472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 45242341 - 45242307
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  45242341 ggtgccatttaatttgggaaaggagagttctttcc 45242307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 17227996 - 17227955
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatg 139  Q
    |||| ||||||||||||||||||||| ||||||||| |||||    
T  17227996 ggtggcatttaatttgggaaaggagacttctttcccaccatg 17227955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 48972495 - 48972346
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctc 195  Q
    |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48972495 taggtgccatttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactctc 48972396  T
Q  196 tcaaccactagattannnnnnnatactatctttcacactctctctttcat 245  Q
    |||||||||||||||       ||||||||||||||||||||||||||||    
T  48972395 tcaaccactagattatttttttatactatctttcacactctctctttcat 48972346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 16270207 - 16270359
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 16270306  T
Q  198 aaccactagatta-nnnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||        |||||||||||||||||| |||||||||||||    
T  16270307 aaccactagattattttttttatactatctttcacactccctctttcatgtcc 16270359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 51974435 - 51974588
Alignment:
Q  96 taggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctc 195  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  51974435 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtctattagattaaatgaagaacatattcctatcatactctc 51974534  T
Q  196 tcaaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||||| |||||||||       ||||||||||||||| ||||||||||||||||    
T  51974535 tcaactactagattatttttttatactatctttcacattctctctttcatgtcc 51974588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 16271196 - 16271045
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||| |||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16271196 ggtgccatttaatttaggaaaggagagttctttctcatcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 16271097  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||| ||||||||||||||||||||||||    
T  16271096 aaccactagattatttttttatactatatttcacactctctctttcatgtcc 16271045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 9947995 - 9948146
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||| | ||||||||||| |||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  9947995 ggtgccatttaatttgggaaagaaaagttctttcccaccatggaaaagttgatcatattcattagattaaatgaggaacatattcctatcatactctctc 9948094  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  9948095 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 9948146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 51975275 - 51975124
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||  | | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  51975275 ggtgccatttaatttgggaaaggagagttctttttcactatgggaaagttgatcatgtcaattagattaaatgaggaacatattcctatcatactctctt 51975176  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  51975175 aaccactagattatttttttatactatctttcacactctctctttcatgtcc 51975124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 98 - 232
Target Start/End: Complemental strand, 23440913 - 23440779
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaatatattcctatcatactctctc 23440814  T
Q  198 aaccactagattannnnnnnatactatctttcaca 232  Q
    |||||||||||||       |||||||||||||||    
T  23440813 aaccactagattatttttttatactatctttcaca 23440779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 38930312 - 38930461
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||||||||||||||||||||||| ||||||||  | ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  38930312 ggtgtcatttaatttgggaaaggaaagttctttttcaccatgggaaagttgatcatatccattaaattaaataaggaacatattcctatcatactctctc 38930411  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgt 247  Q
    |||||||||||||       ||||||||||||||||||||||||||||||    
T  38930412 aaccactagattatttttttatactatctttcacactctctctttcatgt 38930461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 48971705 - 48971854
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  48971705 ggtgtcatttaatttgggaaaggagagttctttcccacaatgagaaagttgatcatataaattagattaaatgaggaacatattcctatcatactctctc 48971804  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgt 247  Q
    |||||||| ||||       ||||||||||||||||||||||||||||||    
T  48971805 aaccactatattatttttttatactatctttcacactctctctttcatgt 48971854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 23440617 - 23440767
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||  | |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  23440617 ggtgccatttaatttgggaaaggagagttctttccaactatggaaaagttgattatgtccattagattaaatgagaaacatattcctatcatactctctc 23440716  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||    
T  23440717 aaccactagatta-ttttttatactatctttcacactctctctttcatgtcc 23440767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 43738027 - 43737914
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctct 196  Q
    ||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43738027 aggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatattctct 43737928  T
Q  197 caaccactagatta 210  Q
    ||||||||||||||    
T  43737927 caaccactagatta 43737914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 9948935 - 9948823
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9948935 ggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctatc 9948836  T
Q  198 aaccactagatta 210  Q
    |||||||||||||    
T  9948835 aaccactagatta 9948823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 43737729 - 43737880
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  43737729 ggtgccatttaatttgggaaagtagagttatttcccaccatgggaaagttgatcatgtccattagattaaatgaggaatatatttttatcatactctctc 43737828  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||       | ||||||||||||| ||||||||| ||||||    
T  43737829 aaccactagattatttttttacactatctttcacattctctctttgatgtcc 43737880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 50827138 - 50826992
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  50827138 ggtgccatttaatttgagaaaggagagtt-tttcccaccatgggaaagttgatcatgtccattagattaaatgagaaacatatttttatcatactctctc 50827040  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctctttcat 245  Q
    |||||||| ||||       ||| ||||||||||||||||||||||||    
T  50827039 aaccactaaattatttttttatagtatctttcacactctctctttcat 50826992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 6076901 - 6076765
Alignment:
Q  112 tgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattan 211  Q
    ||||||| |||||||||||||| | |||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||     
T  6076901 tgggaaatgagagttctttcccactatggaaaagttgatcatgtccattatattaaatgagtaacatattcctatcatactctctcaaccaatagatta- 6076803  T
Q  212 nnnnnnatactatctttcacactctctctttcatgtcc 249  Q
          ||||||||||||||||||||||||||||||||    
T  6076802 ttttttatactatctttcacactctctctttcatgtcc 6076765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 193850 - 193961
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  193850 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagttaatcatgtccattaaattaaatgaggaacatattcttatcatactctctc 193949  T
Q  198 aaccactagatta 210  Q
     | ||||||||||    
T  193950 ca-cactagatta 193961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 38931290 - 38931143
Alignment:
Q  103 catttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaacca 202  Q
    ||||||||||||||||| |||||||||| |  ||||||||||||||||||| ||||||| ||||||| || |||||||| ||||||||||||||||||||    
T  38931290 catttaatttgggaaagaagagttcttttctaccatgggaaagttgatcatatccattaaattaaataagaaacatatttctatcatactctctcaacca 38931191  T
Q  203 ctagatta-nnnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    ||| ||||        ||| ||||||||||||||||||||||||||||    
T  38931190 ctatattattttttttatattatctttcacactctctctttcatgtcc 38931143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 27888700 - 27888765
Alignment:
Q  127 ctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatact 192  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27888700 ctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatact 27888765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 6075988 - 6076076
Alignment:
Q  112 tgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaac 200  Q
    ||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||||| | |||  ||||||| |||||||||    
T  6075988 tgggaaaggagagttcttttctaccatgagaaagttgatcatgtccattagattaaatgaggaatacatttttatcatagtctctcaac 6076076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 47334217 - 47334349
Alignment:
Q  116 aaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattannnnn 215  Q
    ||||| ||||| |||||| | |||||||||||||| ||||||||||||||||||||| |||| || | |||| ||||||||||| ||||||||||         
T  47334217 aaaggggagttgtttcccacaatgggaaagttgattatgtccattagattaaatgagaaacaaatccttatcctactctctcaa-cactagattattgtt 47334315  T
Q  216 nnatactatctttcacactctctctttcatgtcc 249  Q
      | |||||||| |||  ||||||||||||||||    
T  47334316 ttacactatcttccaccatctctctttcatgtcc 47334349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 31390847 - 31390769
Alignment:
Q  122 gagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaac 200  Q
    |||||||||||| |||||||||||||||| ||||||||| || ||||||||||||| |||  |||| ||||||||||||    
T  31390847 gagttctttcccaccatgggaaagttgattatgtccattggaataaatgaggaacacatttttatcctactctctcaac 31390769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 40649578 - 40649516
Alignment:
Q  135 ccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||||||||||||||| ||||||||||||||||||| |||||| |||| |||  |||||||||    
T  40649578 ccatgggaaagttgataatgtccattagattaaatgtggaacacattcttatactactctctc 40649516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 51987826 - 51987875
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||||||||    
T  51987826 aggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 51987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 47334948 - 47334848
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||| | ||||||| | ||||| |||||| |||| ||||||||||| ||||||||| ||||||||||| |||| ||   |||| |||||||||    
T  47334948 ggtggcatttagtatgggaaaagggagttgtttcccaccataggaaagttgattatgtccattggattaaatgagtaacaaatctttatcctactctctc 47334849  T
Q  198 a 198  Q
    |    
T  47334848 a 47334848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 35616824 - 35616775
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    ||||| ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  35616824 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagt 35616775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 1013523 - 1013471
Alignment:
Q  95 ataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagtt 147  Q
    |||||||||||||||||||||||||||  ||| ||| || |||||||||||||    
T  1013523 ataggtgtcatttaatttgggaaaggaatgttattttccaccatgggaaagtt 1013471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 8560839 - 8560887
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||| ||||||||||||||||||||| |||||||||  |||||||||||    
T  8560839 ggtgacatttaatttgggaaaggagacttctttcccatcatgggaaagt 8560887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 51988512 - 51988464
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||| ||||||||||||||||||||| |||||| || ||||||||||||    
T  51988512 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaagt 51988464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 46133716 - 46133795
Alignment:
Q  122 gagttctttcccc-ccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaac 200  Q
    ||||| ||||||| ||||||||||||  || |||||||| |||||||||||||| || |||| |||  ||||||||||||    
T  46133716 gagttttttccccaccatgggaaagtgaattatgtccatcagattaaatgaggagcacattcttatactactctctcaac 46133795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 1012554 - 1012596
Alignment:
Q  105 tttaatttgggaaaggagagttctttccccccatgggaaagtt 147  Q
    ||||||||||||||||||| || |||||| |||||||||||||    
T  1012554 tttaatttgggaaaggagatttttttcccaccatgggaaagtt 1012596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 12925917 - 12925975
Alignment:
Q  142 aaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaac 200  Q
    ||||||||| ||||||||||||||||||| |||| | |||| |||  ||||||||||||    
T  12925917 aaagttgataatgtccattagattaaatgtggaatacattcttatactactctctcaac 12925975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 16270901 - 16270935
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  16270901 ggtgccatttaatttgggaaaggagagttctttcc 16270935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 20794313 - 20794391
Alignment:
Q  122 gagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaac 200  Q
    ||||| ||| || |||| ||||||||||| |||| |||||||||||||| |||||| |||| |||   |||||||||||    
T  20794313 gagtttttttccaccataggaaagttgataatgtgcattagattaaatgtggaacacattcttatatcactctctcaac 20794391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 38930608 - 38930574
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  38930608 ggtgccatttaatttgggaaaggagagttctttcc 38930574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 37822471 - 37822520
Alignment:
Q  97 aggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||||||||||||  |||||||||| ||||||||||| |||||| |||||    
T  37822471 aggtgtcatttaacctgggaaaggaaagttctttcccaccatggaaaagt 37822520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 48869762 - 48869815
Alignment:
Q  91 aaagataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaa 144  Q
    ||||| ||||| ||||||| ||||||||||||| |||||| || ||||||||||    
T  48869762 aaagagaggtgacatttaacttgggaaaggagacttcttttccaccatgggaaa 48869815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 17050490 - 17050554
Alignment:
Q  135 ccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaa 199  Q
    |||||||||||||||| |||| |||||||||||||  || ||| |||| |||  |||||||||||    
T  17050490 ccatgggaaagttgataatgttcattagattaaatatggtacacattcttatactactctctcaa 17050554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 37725438 - 37725489
Alignment:
Q  157 cattagattaaatgaggaacatattcctatcatactctctcaaccactagatt 209  Q
    ||||||||||| ||| |||||||||| || ||||||||||||| |||||||||    
T  37725438 cattagattaagtgaagaacatattcttaacatactctctcaa-cactagatt 37725489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 37874064 - 37874112
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagt 146  Q
    |||| ||||||| |||||||| |||| ||||||||| ||||||||||||    
T  37874064 ggtgacatttaacttgggaaatgagacttctttcccaccatgggaaagt 37874112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 249
Target Start/End: Complemental strand, 214 - 56
Alignment:
Q  92 aagataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatac 191  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  214 aagagaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgattatgttcattagattaaatgaggaacatattcctatcatac 115  T
Q  192 tctctcaaccactagatta-nnnnnnnatactatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  114 tctctcaaccactagattattttttttatactatctttcacactctctctttcatgtcc 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 242
Target Start/End: Complemental strand, 9306 - 9162
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    ||||||||||||||||| ||||||||||| |||  | |||||| |||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  9306 ggtgtcatttaatttggaaaaggagagttttttttcaccatggaaaagttcatcatgtccattagattaaatgatgaacatattcttatcatactctctc 9207  T
Q  198 aaccactagattannnnnnnatactatctttcacactctctcttt 242  Q
    |||||||||||||       |||||||||||||||||||||||||    
T  9206 aaccactagattatttttttatactatctttcacactctctcttt 9162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 27221 - 27323
Alignment:
Q  98 ggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctc 197  Q
    |||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  27221 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacacattcttatcatactctctc 27320  T
Q  198 aac 200  Q
    |||    
T  27321 aac 27323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 27630 - 27534
Alignment:
Q  91 aaagataggtgtcatttaatttgggaaaggagagttctttccccccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatc 187  Q
    |||||| |||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27630 aaagattggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagttgatcatatccattagattaaatgaggaacatattcctatc 27534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 249
Target Start/End: Complemental strand, 27538 - 27510
Alignment:
Q  221 ctatctttcacactctctctttcatgtcc 249  Q
    |||||||||||||||||||||||||||||    
T  27538 ctatctttcacactctctctttcatgtcc 27510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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