View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9048_low_18 (Length: 305)
Name: NF9048_low_18
Description: NF9048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9048_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 29758222 - 29758040
Alignment:
| Q |
72 |
cacaattaagaaacaacacttgcctggggattgtactctgcagtaggagcttgaagcttaatggattgaaggtccaacttacaatctaaattgacagttg |
171 |
Q |
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| T |
29758222 |
cacaattaagaaacaacacttgcctggggattgtactctgcagtaggagcttgaagcttaatggattgaaggtccaacttacaatccaaattcacagttg |
29758123 |
T |
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| Q |
172 |
acacaatatttctggcaatacaaattcaaatcatattcatttttcgatattcaaaagcacaaaagcaattccattattaatcg |
254 |
Q |
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| T |
29758122 |
acacaatatttctggcaatacaaattcaaatcatattcatttttcgatattcaaaaacacaaaagcaattccattattaatcg |
29758040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 29851875 - 29852035
Alignment:
| Q |
72 |
cacaattaagaaacaacacttgcctggggattgtactctgcagtaggagcttgaagcttaatggattgaaggtccaacttacaatctaaattgacagttg |
171 |
Q |
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| T |
29851875 |
cacaattaaaaaacataacttgcctggggattatactctgcagtaggagcttgaagcttgatggaattaaggtccaacttacagtccaaattgactgtcg |
29851974 |
T |
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| Q |
172 |
acacaatatttctggcaatacaaattcaaatcatattcatttttcgatattcaaaagcaca |
232 |
Q |
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| T |
29851975 |
acacaatatttctggcaataaaaatacaaataacatacatttttagatatgctaaagcaca |
29852035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 29758329 - 29758254
Alignment:
| Q |
1 |
actgcagacaaatgtccaacgattatgataacatatcaaacatgtaactattcataattgatttcagataacacaa |
76 |
Q |
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| T |
29758329 |
actgcagacaaatttccaacgattatgataacatatcaaacatgtaactattgataattgatttcagataacacaa |
29758254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29851719 - 29851790
Alignment:
| Q |
1 |
actgcagacaaatgtccaacgattatgataacatat-caaacatgtaactattcataattgatttcagataa |
71 |
Q |
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| T |
29851719 |
actgcagacaaatgtccaacgatcatgataacatataaaaaaatgtaactatttataattgatttcagataa |
29851790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 283249 - 283300
Alignment:
| Q |
72 |
cacaattaagaaacaacacttgcctggggattgtactctgcagtaggagctt |
123 |
Q |
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| T |
283249 |
cacaattaataaacaaaacatgcttggggattgtactctgcagtagaagctt |
283300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 27012879 - 27012776
Alignment:
| Q |
82 |
aaacaacacttgcctggggattgtactctgcagtaggagcttgaagcttaatggattgaaggtccaacttacaatctaaattgacagttgacacaatatt |
181 |
Q |
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|||||| |||||||| |||||||||||||||| || ||||||||||| ||| |||| || ||||||||||| || ||||||||||||||||||||||| |
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| T |
27012879 |
aaacaaaacttgccttgggattgtactctgcattacgagcttgaagcgcaattgatttcagctccaacttacagtccaaattgacagttgacacaatatt |
27012780 |
T |
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| Q |
182 |
tctg |
185 |
Q |
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|||| |
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| T |
27012779 |
tctg |
27012776 |
T |
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