View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9048_low_2 (Length: 578)

Name: NF9048_low_2
Description: NF9048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9048_low_2
NF9048_low_2
[»] chr7 (42 HSPs)
chr7 (277-553)||(3719963-3720238)
chr7 (19-143)||(3720385-3720509)
chr7 (312-398)||(40774245-40774331)
chr7 (277-372)||(32204167-32204262)
chr7 (279-345)||(18800204-18800270)
chr7 (310-384)||(8380459-8380533)
chr7 (280-349)||(6548518-6548587)
chr7 (277-358)||(34835849-34835930)
chr7 (277-348)||(35404307-35404378)
chr7 (310-349)||(46478607-46478646)
chr7 (310-384)||(40763267-40763341)
chr7 (295-384)||(42222224-42222313)
chr7 (310-358)||(1910262-1910310)
chr7 (296-380)||(14718139-14718223)
chr7 (279-358)||(27236852-27236931)
chr7 (313-364)||(30388697-30388748)
chr7 (310-384)||(3681712-3681786)
chr7 (310-384)||(22707067-22707141)
chr7 (277-358)||(27053536-27053617)
chr7 (279-412)||(42552461-42552593)
chr7 (289-381)||(3863039-3863131)
chr7 (316-384)||(5240349-5240417)
chr7 (296-364)||(40066954-40067021)
chr7 (277-364)||(4686080-4686167)
chr7 (295-390)||(49069558-49069653)
chr7 (316-358)||(5348015-5348057)
chr7 (310-372)||(5543064-5543126)
chr7 (310-344)||(24359765-24359799)
chr7 (310-384)||(29034705-29034779)
chr7 (310-384)||(31626058-31626132)
chr7 (316-390)||(41188797-41188871)
chr7 (305-391)||(44478396-44478482)
chr7 (310-390)||(7322964-7323044)
chr7 (310-390)||(22521604-22521684)
chr7 (310-358)||(29687494-29687542)
chr7 (324-384)||(36279151-36279211)
chr7 (308-384)||(38940682-38940758)
chr7 (317-369)||(41084823-41084875)
chr7 (310-358)||(43567549-43567597)
chr7 (313-349)||(43958135-43958171)
chr7 (277-345)||(44296957-44297025)
chr7 (316-384)||(48454839-48454907)
[»] chr4 (45 HSPs)
chr4 (306-408)||(23260718-23260821)
chr4 (281-372)||(3769802-3769893)
chr4 (277-382)||(966567-966671)
chr4 (304-412)||(27545874-27545982)
chr4 (305-404)||(52021045-52021144)
chr4 (282-383)||(27839324-27839425)
chr4 (277-397)||(1457539-1457659)
chr4 (279-391)||(35675200-35675312)
chr4 (277-384)||(31754923-31755030)
chr4 (277-391)||(30617934-30618048)
chr4 (277-358)||(52341586-52341667)
chr4 (307-384)||(55669754-55669831)
chr4 (303-391)||(30199796-30199884)
chr4 (310-390)||(41956224-41956304)
chr4 (310-384)||(30475443-30475517)
chr4 (310-384)||(45688761-45688835)
chr4 (279-372)||(32885017-32885109)
chr4 (310-391)||(48513637-48513718)
chr4 (310-391)||(51018389-51018470)
chr4 (305-400)||(42627100-42627194)
chr4 (277-384)||(51266909-51267016)
chr4 (310-384)||(35808413-35808487)
chr4 (305-391)||(35927284-35927370)
chr4 (277-390)||(20456554-20456667)
chr4 (310-391)||(55120109-55120190)
chr4 (310-409)||(27544524-27544625)
chr4 (303-391)||(29462812-29462900)
chr4 (277-381)||(39158346-39158450)
chr4 (277-345)||(50514669-50514737)
chr4 (284-331)||(3929749-3929796)
chr4 (277-344)||(9693528-9693595)
chr4 (310-345)||(19328984-19329019)
chr4 (312-391)||(31010437-31010516)
chr4 (313-384)||(54339134-54339204)
chr4 (277-384)||(2362614-2362723)
chr4 (306-340)||(3472137-3472171)
chr4 (307-345)||(20811278-20811316)
chr4 (310-384)||(26040377-26040451)
chr4 (317-391)||(33803397-33803470)
chr4 (295-345)||(33951703-33951753)
chr4 (310-384)||(34016643-34016717)
chr4 (310-384)||(40436099-40436173)
chr4 (310-343)||(53567011-53567044)
chr4 (324-364)||(3684579-3684619)
chr4 (289-345)||(25928436-25928492)
[»] chr2 (29 HSPs)
chr2 (277-384)||(33726365-33726472)
chr2 (283-408)||(2239573-2239698)
chr2 (285-386)||(44173112-44173213)
chr2 (308-391)||(8326996-8327079)
chr2 (305-383)||(30831631-30831709)
chr2 (310-383)||(13997922-13997995)
chr2 (313-390)||(43140334-43140411)
chr2 (277-389)||(2136421-2136533)
chr2 (316-384)||(17603835-17603903)
chr2 (284-358)||(34512638-34512712)
chr2 (310-384)||(41436496-41436570)
chr2 (310-391)||(11659280-11659361)
chr2 (310-390)||(33864373-33864453)
chr2 (310-409)||(34220638-34220737)
chr2 (295-390)||(34334172-34334267)
chr2 (282-384)||(35445307-35445410)
chr2 (310-384)||(6999220-6999294)
chr2 (277-330)||(41890182-41890235)
chr2 (295-355)||(15004930-15004990)
chr2 (310-390)||(44299692-44299772)
chr2 (306-349)||(32949521-32949564)
chr2 (284-391)||(2805373-2805482)
chr2 (278-384)||(10900267-10900373)
chr2 (310-384)||(39085809-39085883)
chr2 (316-349)||(464819-464852)
chr2 (295-384)||(39401552-39401640)
chr2 (310-358)||(9201538-9201586)
chr2 (310-358)||(17095109-17095157)
chr2 (306-334)||(34883505-34883533)
[»] chr6 (20 HSPs)
chr6 (301-391)||(27127517-27127607)
chr6 (311-391)||(12775129-12775209)
chr6 (310-381)||(7875201-7875272)
chr6 (310-384)||(5578292-5578366)
chr6 (306-372)||(20775022-20775088)
chr6 (310-358)||(7880470-7880518)
chr6 (310-390)||(8324115-8324195)
chr6 (317-384)||(12175584-12175651)
chr6 (310-364)||(10855450-10855504)
chr6 (290-372)||(28014633-28014715)
chr6 (277-358)||(26572120-26572201)
chr6 (277-397)||(12226335-12226455)
chr6 (284-331)||(32251345-32251392)
chr6 (310-384)||(6866933-6867007)
chr6 (310-384)||(12191511-12191585)
chr6 (284-372)||(26539104-26539193)
chr6 (284-345)||(31490746-31490807)
chr6 (310-358)||(7274257-7274305)
chr6 (277-345)||(21186073-21186141)
chr6 (316-384)||(29692358-29692426)
[»] chr8 (32 HSPs)
chr8 (277-349)||(4308794-4308866)
chr8 (300-398)||(31596424-31596522)
chr8 (307-383)||(6433559-6433635)
chr8 (310-382)||(25249360-25249432)
chr8 (310-349)||(33741526-33741565)
chr8 (324-390)||(35930168-35930234)
chr8 (310-391)||(11332804-11332885)
chr8 (289-349)||(11264426-11264486)
chr8 (284-340)||(17320015-17320071)
chr8 (313-349)||(26892807-26892843)
chr8 (317-404)||(11295461-11295548)
chr8 (295-398)||(26195376-26195479)
chr8 (277-384)||(26672775-26672882)
chr8 (313-403)||(31301866-31301956)
chr8 (307-372)||(5129485-5129550)
chr8 (284-365)||(37433258-37433338)
chr8 (312-397)||(38870024-38870109)
chr8 (277-358)||(39972195-39972276)
chr8 (277-384)||(7532772-7532877)
chr8 (324-384)||(45338036-45338096)
chr8 (306-349)||(7473587-7473630)
chr8 (303-338)||(30351602-30351637)
chr8 (277-340)||(35455253-35455316)
chr8 (310-349)||(35973928-35973967)
chr8 (310-397)||(40550381-40550468)
chr8 (310-384)||(6939176-6939250)
chr8 (277-331)||(7444263-7444317)
chr8 (310-384)||(18068980-18069054)
chr8 (307-344)||(14855441-14855478)
chr8 (316-384)||(4989957-4990025)
chr8 (277-345)||(19389366-19389434)
chr8 (277-345)||(20212445-20212513)
[»] chr5 (35 HSPs)
chr5 (277-381)||(19894803-19894907)
chr5 (304-412)||(3015039-3015147)
chr5 (283-412)||(17168667-17168796)
chr5 (310-398)||(3241956-3242044)
chr5 (277-384)||(39567888-39567995)
chr5 (310-384)||(5151507-5151581)
chr5 (310-391)||(38610302-38610383)
chr5 (316-384)||(1479153-1479221)
chr5 (296-380)||(17605965-17606049)
chr5 (307-390)||(1759832-1759915)
chr5 (277-372)||(20184577-20184672)
chr5 (310-349)||(39693028-39693067)
chr5 (310-384)||(338781-338855)
chr5 (307-349)||(1446986-1447028)
chr5 (295-349)||(8410145-8410199)
chr5 (310-384)||(34546796-34546870)
chr5 (283-372)||(12914166-12914255)
chr5 (284-392)||(8454529-8454637)
chr5 (277-345)||(25017347-25017415)
chr5 (324-384)||(25568309-25568369)
chr5 (277-340)||(678435-678498)
chr5 (303-338)||(6823816-6823851)
chr5 (278-345)||(39335459-39335526)
chr5 (310-384)||(37243865-37243939)
chr5 (310-384)||(39042052-39042126)
chr5 (310-384)||(43414081-43414155)
chr5 (310-383)||(4962534-4962607)
chr5 (312-349)||(8987432-8987469)
chr5 (285-349)||(37307606-37307671)
chr5 (306-399)||(39167610-39167702)
chr5 (310-358)||(2970148-2970196)
chr5 (310-390)||(4421975-4422055)
chr5 (316-384)||(27823283-27823351)
chr5 (317-349)||(28599706-28599738)
chr5 (351-399)||(37307663-37307711)
[»] chr3 (37 HSPs)
chr3 (284-379)||(33633864-33633959)
chr3 (283-384)||(4542370-4542471)
chr3 (277-381)||(34060786-34060890)
chr3 (310-390)||(51817323-51817403)
chr3 (303-391)||(18797-18885)
chr3 (277-404)||(11675298-11675423)
chr3 (304-372)||(21324528-21324595)
chr3 (305-384)||(49976158-49976237)
chr3 (310-384)||(4759867-4759941)
chr3 (303-381)||(39974826-39974904)
chr3 (310-384)||(46317504-46317578)
chr3 (295-372)||(20227409-20227486)
chr3 (303-383)||(18946-19026)
chr3 (289-345)||(34750313-34750369)
chr3 (316-384)||(35306356-35306424)
chr3 (310-384)||(36730170-36730244)
chr3 (310-383)||(12051056-12051129)
chr3 (310-382)||(8715520-8715592)
chr3 (310-382)||(9067407-9067479)
chr3 (310-358)||(44695714-44695762)
chr3 (310-345)||(8847508-8847543)
chr3 (310-345)||(37509129-37509164)
chr3 (295-349)||(271218-271272)
chr3 (310-372)||(10854877-10854939)
chr3 (310-384)||(12905300-12905373)
chr3 (278-391)||(13647046-13647162)
chr3 (310-384)||(32415587-32415661)
chr3 (279-364)||(29213397-29213482)
chr3 (316-349)||(31647328-31647361)
chr3 (310-343)||(41345993-41346026)
chr3 (284-372)||(12060088-12060176)
chr3 (316-384)||(29915592-29915660)
chr3 (316-384)||(29964745-29964813)
chr3 (313-349)||(33466001-33466037)
chr3 (322-390)||(39436495-39436563)
chr3 (313-349)||(44019162-44019198)
chr3 (310-358)||(52570800-52570848)
[»] chr1 (40 HSPs)
chr1 (277-384)||(4940754-4940861)
chr1 (313-384)||(26469596-26469667)
chr1 (310-384)||(42607338-42607412)
chr1 (316-391)||(7190482-7190557)
chr1 (310-384)||(50154491-50154565)
chr1 (317-398)||(27210750-27210831)
chr1 (277-391)||(40920170-40920286)
chr1 (277-384)||(41147492-41147599)
chr1 (283-384)||(43433766-43433867)
chr1 (310-390)||(28277490-28277570)
chr1 (310-384)||(932171-932245)
chr1 (310-384)||(27209735-27209809)
chr1 (310-384)||(33929984-33930058)
chr1 (310-384)||(40845269-40845343)
chr1 (310-372)||(41898885-41898947)
chr1 (307-349)||(44286887-44286929)
chr1 (310-384)||(47655385-47655459)
chr1 (310-383)||(22346252-22346325)
chr1 (311-384)||(49508748-49508820)
chr1 (310-391)||(49559694-49559775)
chr1 (316-384)||(2125721-2125789)
chr1 (284-364)||(21268329-21268408)
chr1 (310-349)||(6170600-6170639)
chr1 (305-384)||(17402961-17403040)
chr1 (310-349)||(46296234-46296273)
chr1 (310-345)||(50295486-50295521)
chr1 (313-384)||(52396464-52396534)
chr1 (310-384)||(11385999-11386073)
chr1 (277-355)||(11803411-11803489)
chr1 (277-391)||(14331822-14331936)
chr1 (301-391)||(16691303-16691393)
chr1 (307-365)||(31975502-31975560)
chr1 (310-384)||(34874585-34874659)
chr1 (310-412)||(48938654-48938755)
chr1 (310-358)||(30222638-30222687)
chr1 (317-390)||(49901951-49902024)
chr1 (297-345)||(8414870-8414918)
chr1 (284-340)||(10161024-10161080)
chr1 (304-332)||(35223569-35223597)
chr1 (305-349)||(47466373-47466417)
[»] scaffold0101 (1 HSPs)
scaffold0101 (284-349)||(11099-11164)
[»] scaffold0062 (3 HSPs)
scaffold0062 (310-384)||(16789-16862)
scaffold0062 (310-384)||(26957-27030)
scaffold0062 (310-384)||(37123-37196)
[»] scaffold0002 (1 HSPs)
scaffold0002 (310-371)||(392162-392223)
[»] scaffold0161 (1 HSPs)
scaffold0161 (279-358)||(8774-8854)
[»] scaffold0034 (1 HSPs)
scaffold0034 (311-391)||(97796-97875)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 277 - 553
Target Start/End: Complemental strand, 3720238 - 3719963
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    |||||| ||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  3720238 ggaaataaaaaatagtagatttgtaatggattcaagaatgttttaacttttaaaaagttaaatttatcattttacaccatttgtcaatgcaatattacta 3720139  T
Q  377 tttttatcatcttaattaatgttttaagagcactctagcatttgtcaataata-------aatggtataatggaaaagatagcaataataacttcattga 469  Q
    |||||||||| ||||| ||||||          |||| ||||| | |||||||       ||||||||||||||||||||||||||||||||||||||||    
T  3720138 tttttatcattttaatcaatgtt---------gtctaccatttcttaataataaatggctaatggtataatggaaaagatagcaataataacttcattga 3720048  T
Q  470 tattgcaaagcgatttatactttaggac-nnnnnnnnttctcaaaacgtcataccctctttgtctcaaaatgtaagcaaaaattg 553  Q
    || |||||||  ||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3720047 tagtgcaaagtcatttatactttaggacaaaaaaaaattctcaaaacgtcataccctctttgtctcaaaatgtaagcaaaaattg 3719963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 3720509 - 3720385
Alignment:
Q  19 gaacagaacagaacagaaagtggtttttgacaatgtggcttcgatgataactatgtttgcatcaatgtcataggttttgatttccaactttcaactaact 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3720509 gaacagaactgaacagaaagtggtttttgacaatgtggcttcgatgataactatgtttgcatcaatgtcataggttttgatttccaactttcaactaact 3720410  T
Q  119 ttgaaccataaattttcggtcacac 143  Q
    |||||||||||||||||||||||||    
T  3720409 ttgaaccataaattttcggtcacac 3720385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 40774331 - 40774245
Alignment:
Q  312 caatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgt 398  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||  ||||| |||| ||||||| |||||    
T  40774331 caatattttaacttttaaaaagttaaattcatcaattttcatcatttttcaatgcaatatttctatttgtatcttcttaatcaatgt 40774245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 277 - 372
Target Start/End: Original strand, 32204167 - 32204262
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    |||||||||| ||||||  |||| | || ||| || |||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||    
T  32204167 ggaaatcaaagatagtaaatttgcattgtattcaaaaatattttaacttttaaaaagttaaattcatcacttttcatcatttttcaatgcaatatt 32204262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 18800270 - 18800204
Alignment:
Q  279 aaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||||||| ||||| |||||||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  18800270 aaatcaaaagtagtaagtttgtaatggattcaacaatattgtaatttttaaaaagttaaatttatca 18800204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 8380459 - 8380533
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||| ||| ||||||||  |||||| ||||| |||||||||||    
T  8380459 aacaacattttgacttttaaaaagttaaatttatcacttttcatcattttccaatgctatatttttatttttatc 8380533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 6548518 - 6548587
Alignment:
Q  280 aatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    |||||||| ||||| ||||| | |||||  ||||||||||||||||||||||||||||||| ||||||||    
T  6548518 aatcaaaagtagtaagtttgcattggatccaacaatattttaacttttaaaaagttaaattcatcatttt 6548587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 34835849 - 34835930
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    |||||| |||| |||||  ||| || || |||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  34835849 ggaaattaaaagtagtatatttatattgaatttaacaatattttaacttttaaaaagttaaattcttcatttttcatcattt 34835930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 348
Target Start/End: Complemental strand, 35404378 - 35404307
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattt 348  Q
    ||||||||||| ||||||||||  | | |||| ||| ||||||||||||||||||||||||||| |||||||    
T  35404378 ggaaatcaaaagtagtaggtttacattagattcaacgatattttaacttttaaaaagttaaattcatcattt 35404307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 46478646 - 46478607
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46478646 aacaatattttaacttttaaaaagttaaatttatcatttt 46478607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 40763267 - 40763341
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| |||||||||||||||||||||||||||||| ||| || ||||| ||||||  |||||  ||||||||||    
T  40763267 aacaacattttaacttttaaaaagttaaatttatcacttttcaccatttttcaatgttatatttctatttttatc 40763341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 384
Target Start/End: Original strand, 42222224 - 42222313
Alignment:
Q  295 gtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||| ||| || ||||||||||| |||||||||||||||||||||||| ||| || |||||  |||| | |||||  ||||||||||    
T  42222224 gtttgtattggtttcaacaatattttgacttttaaaaagttaaatttatcacttttcaccattttccaataccatatttctatttttatc 42222313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 1910262 - 1910310
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  1910262 aacaacattttaacttttaaaaagttaaatttatcatttttcaccattt 1910310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 380
Target Start/End: Complemental strand, 14718223 - 14718139
Alignment:
Q  296 tttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttt 380  Q
    |||||| || ||| || |||||||||||||||||||||||||||| || ||||| |||   || ||||||||||||| |||||||    
T  14718223 tttgtattgaattcaataatattttaacttttaaaaagttaaattcattatttttcattgcttttcaatgcaatatttttatttt 14718139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 27236931 - 27236852
Alignment:
Q  279 aaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    |||| ||||||||||  |||||| || ||| |||||| ||||||||||||| |||| |||| ||||||||| ||||||||    
T  27236931 aaattaaaaatagtaaatttgtattgaattcaacaattttttaacttttaagaagtcaaatctatcatttttcatcattt 27236852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 364
Target Start/End: Complemental strand, 30388748 - 30388697
Alignment:
Q  313 aatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaat 364  Q
    |||||||| |||||||||||||||||||||||||||| || ||||| |||||    
T  30388748 aatattttgacttttaaaaagttaaatttatcatttttcaccatttttcaat 30388697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 3681712 - 3681786
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| |||||||||||||||||||||||||||||| ||| || |||||  |||||   |||| |||||||||||    
T  3681712 aacaacattttaacttttaaaaagttaaatttatcacttttcaccattttccaatgttgtatttttatttttatc 3681786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 22707067 - 22707141
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| || |||||||||||||||| |||||||||||||| ||| ||||  |||||| |||||  ||||||||||    
T  22707067 aacaacatgttaacttttaaaaagtaaaatttatcatttttcattattttccaatgctatatttctatttttatc 22707141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 27053617 - 27053536
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||| ||||| ||| | ||||| | ||| || ||||||||||| |||||||||||||||||||||||| ||| || |||||    
T  27053617 ggaaaccaaaagtagaatgtttgcattggtttcaacaatattttgacttttaaaaagttaaatttatcacttttcaccattt 27053536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 412
Target Start/End: Complemental strand, 42552593 - 42552461
Alignment:
Q  279 aaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatt 378  Q
    ||||||||| || || ||||| | || ||||||||||||||| |||||||||||||||| || || |||||  |  |||| ||||  ||||||| |||||    
T  42552593 aaatcaaaagtaatatgtttgcattgaatttaacaatattttgacttttaaaaagttaa-ttcattattttttactatttttcaacacaatatttttatt 42552495  T
Q  379 tttatcatcttaattaatgttttaagagcactct 412  Q
    |||||| |||||| ||| | || |||| ||||||    
T  42552494 tttatcttcttaactaacgcttcaagaacactct 42552461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 3863039 - 3863131
Alignment:
Q  289 tagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttt 381  Q
    |||||| |||| | |||||| |||||| |||||||||| ||||||||||||| |  ||||| ||||||||  | || ||||||| ||||||||    
T  3863039 tagtagatttgcattggattcaacaattttttaactttaaaaaagttaaattcactatttttcatcatttcccgatacaatatttttattttt 3863131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 5240417 - 5240349
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| |||||||||||||||||||||||| ||| || ||||| ||||| | |||||  ||||||||||    
T  5240417 attttgacttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttctatttttatc 5240349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 40067021 - 40066954
Alignment:
Q  296 tttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaat 364  Q
    |||||| ||| |||||||| ||||||  |||||||||||||||||||||||||| || ||||| |||||    
T  40067021 tttgtattggttttaacaacattttat-ttttaaaaagttaaatttatcatttttcaccatttttcaat 40066954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 4686167 - 4686080
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaat 364  Q
    |||||||| || ||||| ||||||  || ||| |||| | |||||||||||||||||||||||| |||| ||| || ||||| |||||    
T  4686167 ggaaatcataagtagtaagtttgtcttgaattcaacacttttttaacttttaaaaagttaaattaatcacttttcaccatttttcaat 4686080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 49069558 - 49069653
Alignment:
Q  295 gtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||||| ||| || |||||||| || | ||||||||||||| |||||||| ||| || ||||| ||||| | |||||  |||||||||| |||||    
T  49069558 gtttgtattggtttcaacaatatattgatttttaaaaagttagatttatcacttttcaccatttttcaatactatatttctatttttatcttctta 49069653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 5348057 - 5348015
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||    
T  5348057 attttgacttttaaaaagttaaatttatcacttttcatcattt 5348015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 5543064 - 5543126
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    |||||| |||||||||||||||||| |||| ||||| ||| || ||||| ||||| |||||||    
T  5543064 aacaattttttaacttttaaaaagtcaaatatatcacttttcaccatttctcaatacaatatt 5543126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 24359799 - 24359765
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatc 344  Q
    ||||| |||||||||||||||||||||||||||||    
T  24359799 aacaacattttaacttttaaaaagttaaatttatc 24359765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 29034705 - 29034779
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||| ||| || |||||  |||| | |||||  ||||||||||    
T  29034705 aacaacattttgacttttaaaaagttaaatttatcacttttcaccattttccaatactatatttatatttttatc 29034779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 31626132 - 31626058
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| | |||||||||||||||||||||| ||| |||||||| | |||   ||||| |||||||||||    
T  31626132 aacaacattttgatttttaaaaagttaaatttatcacttttcatcattttttaatattatatttttatttttatc 31626058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 390
Target Start/End: Complemental strand, 41188871 - 41188797
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||| ||||||||||||||||||||||||  || || |||||  |||||| |||||  |||||||||| |||||    
T  41188871 attttgacttttaaaaagttaaatttatcacctttcaccattttccaatgctatatttatatttttatcctctta 41188797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 391
Target Start/End: Original strand, 44478396 - 44478482
Alignment:
Q  305 gatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||| |||||||||||| |||||||||| | |||||||| |||||  |  |||| ||||| |||||||| ||||| |||| ||||||    
T  44478396 gattcaacaatattttagcttttaaaaaatcaaatttattattttttacaatttttcaatacaatattactatttatatcctcttaa 44478482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 7323044 - 7322964
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||| ||||| ||||||||||| |||||||||||| ||| || ||||| |||| |  |||||  |||||||||| |||||    
T  7323044 aacaacattttgacttttaaaaaattaaatttatcacttttcaccatttttcaaggttatatttctatttttatcctctta 7322964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 22521604 - 22521684
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||| ||||| |||||||| ||||||||||||||| ||  ||||||||  |||||| |||||  || ||||||| |||||    
T  22521604 aacaacattttgacttttaagaagttaaatttatcacttctcatcattttccaatgctatatttctagttttatcctctta 22521684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 29687494 - 29687542
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||| ||||||||||||||||||||||||| |||| ||| || |||||    
T  29687494 aacaacattttaacttttaaaaagttaaattcatcacttttcaccattt 29687542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 36279151 - 36279211
Alignment:
Q  324 ttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||||||||||||||||||| ||| || |||||  |||||| |||||  ||||||||||    
T  36279151 ttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttatatttttatc 36279211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 38940682 - 38940758
Alignment:
Q  308 ttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||||||||||||||||| |||| ||||||| |  ||||| ||  |||| | ||| ||||||| |||||||||||    
T  38940682 ttaacaatattttaacttttgaaaaattaaattcactattttccactattttttaatacaatatttttatttttatc 38940758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 41084823 - 41084875
Alignment:
Q  317 ttttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaat 369  Q
    ||||||||||||||||||||||| ||||| ||| ||| |||| ||||| ||||    
T  41084823 ttttaacttttaaaaagttaaatctatcaattttcattatttctcaatacaat 41084875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 43567597 - 43567549
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||| ||||| |||||||||||||||||||||||| ||| || |||||    
T  43567597 aacaacattttgacttttaaaaagttaaatttatcacttttcaccattt 43567549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 43958171 - 43958135
Alignment:
Q  313 aatattttaacttttaaaaagttaaatttatcatttt 349  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  43958171 aatattttgacttttaaaaaattaaatttatcatttt 43958135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 44297025 - 44296957
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||| ||||| ||| ||||||  | |||||| ||| ||||||||||||||||||| ||||||| ||||    
T  44297025 ggaaaccaaaagtagcaggtttacattggattcaacgatattttaacttttaaaaacttaaattcatca 44296957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 48454907 - 48454839
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| |||||||||||||||||||||||| ||| || |||||  |||||  |||||  ||||||||||    
T  48454907 attttgacttttaaaaagttaaatttatcacttttcaccatttcccaatgttatatttctatttttatc 48454839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 23260718 - 23260821
Alignment:
Q  306 atttaacaatattttaacttttaaaaagttaaatttatcat-tttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgttttaag 404  Q
    |||||| |||||||||||||||||||||||||||| ||||  ||| || ||||| ||||||||||||| ||||||||||||||||||| |||||| ||||    
T  23260718 atttaataatattttaacttttaaaaagttaaattcatcagcttttcaccatttctcaatgcaatatttttatttttatcatcttaatcaatgttctaag 23260817  T
Q  405 agca 408  Q
    ||||    
T  23260818 agca 23260821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 3769802 - 3769893
Alignment:
Q  281 atcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    ||||||| ||||||||||| | || ||||||||||||||||||||||||||||| |||||||||| ||| || ||||| |||||||||||||    
T  3769802 atcaaaagtagtaggtttgcattgaatttaacaatattttaacttttaaaaagtcaaatttatcacttttcaccatttttcaatgcaatatt 3769893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 382
Target Start/End: Original strand, 966567 - 966671
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||||||||| |||||| |||  | |||||| ||||||||||||| ||||||||||||||||| || |||||  ||||||| ||||||||||||| |||    
T  966567 ggaaatcaaaagtagtagtttttcattggattcaacaatattttaatttttaaaaagttaaattcataattttttatcatttttcaatgcaatatt-tta 966665  T
Q  377 ttttta 382  Q
    ||||||    
T  966666 ttttta 966671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 27545874 - 27545982
Alignment:
Q  304 ggatttaacaatattttaactttt-aaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgtttta 402  Q
    ||||| ||||||||||||| |||| ||||||||||||| |||| |||  ||||||| |||||||||||||  |||||||||| ||||||| ||||| |||    
T  27545874 ggattcaacaatattttaagttttcaaaaagttaaattcatcactttt-atcatttttcaatgcaatatttctatttttatcctcttaataaatgtctta 27545972  T
Q  403 agagcactct 412  Q
    ||||||||||    
T  27545973 agagcactct 27545982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 305 - 404
Target Start/End: Original strand, 52021045 - 52021144
Alignment:
Q  305 gatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgttttaag 404  Q
    |||| |||||||||||||| |||||||||||||||||||||||||  |   ||| ||||||||| |||  |||| ||||||||||||| |||||||||||    
T  52021045 gattcaacaatattttaacatttaaaaagttaaatttatcattttttacagtttttcaatgcaaaatttctattcttatcatcttaatcaatgttttaag 52021144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 282 - 383
Target Start/End: Complemental strand, 27839425 - 27839324
Alignment:
Q  282 tcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttt 381  Q
    |||||||||| | ||||| | ||| ||||| || ||||| ||||||||||| |||||||||||||||| |||||||| ||||||| |||||  |||||||    
T  27839425 tcaaaaatagcatgtttgcattggttttaataacattttgacttttaaaaacttaaatttatcatttttcatcatttttcaatgctatatttctattttt 27839326  T
Q  382 at 383  Q
    ||    
T  27839325 at 27839324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 397
Target Start/End: Complemental strand, 1457659 - 1457539
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||||||||| || || ||||| | || ||| ||||||||||||||||||||||| |||||||||||| |||  || | || |||||| ||||||  ||    
T  1457659 ggaaatcaaaagtaataagtttgcattgaattcaacaatattttaacttttaaaaaattaaatttatcaatttttattacttttcaatgtaatatttcta 1457560  T
Q  377 tttttatcatcttaattaatg 397  Q
    |||||||| ||||||| ||||    
T  1457559 tttttatcttcttaatcaatg 1457539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 391
Target Start/End: Complemental strand, 35675312 - 35675200
Alignment:
Q  279 aaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatt 378  Q
    ||||||||| ||||| ||||| | || ||| ||||||||||||||||||||||||||||||| |||| ||| ||  ||||  |||| |||||||  ||||    
T  35675312 aaatcaaaagtagtatgtttgcattgaattcaacaatattttaacttttaaaaagttaaattcatcacttttcactatttcccaatacaatatttctatt 35675213  T
Q  379 tttatcatcttaa 391  Q
    |||||| ||||||    
T  35675212 tttatcgtcttaa 35675200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 31754923 - 31755030
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    |||| |||||| ||| | ||||| | ||| || ||||||||||| |||||||||||||||||||||||| ||| |||||||| ||||| | |||||  ||    
T  31754923 ggaagtcaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagttaaatttatcacttttcatcatttttcaattctatatttata 31755022  T
Q  377 tttttatc 384  Q
    ||||||||    
T  31755023 tttttatc 31755030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 277 - 391
Target Start/End: Original strand, 30617934 - 30618048
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||| ||||| ||||||| ||| | |||||| |||||||||| |||||||||||||||||||| ||   ||| ||||||||  ||||||||||||  ||    
T  30617934 ggaaaccaaaagtagtaggattgcattggattcaacaatatttgaacttttaaaaagttaaattcattgcttttcatcatttcccaatgcaatatttcta 30618033  T
Q  377 tttttatcatcttaa 391  Q
    | |||||| ||||||    
T  30618034 tgtttatcctcttaa 30618048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 52341586 - 52341667
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||| ||||| ||||| ||||| | |||||| ||||| ||||| ||||||||||||||||||| |||||||| ||||||||    
T  52341586 ggaaaccaaaattagtatgtttgcattggattcaacaacattttgacttttaaaaagttaaattcatcatttttcatcattt 52341667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 384
Target Start/End: Original strand, 55669754 - 55669831
Alignment:
Q  307 tttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||||| ||||| |||||||||||||||||||||||||||| || |||||  |||||| |||||  ||||||||||    
T  55669754 tttaacaacattttgacttttaaaaagttaaatttatcatttttcaccattttccaatgctatatttctatttttatc 55669831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 303 - 391
Target Start/End: Complemental strand, 30199884 - 30199796
Alignment:
Q  303 tggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||| || |||||||||||||||||||| |||| || |||| |||  ||||||| |||||||||||||  |||||||||| ||||||    
T  30199884 tggattcaataatattttaacttttaaaaaattaatttcatcactttttatcatttttcaatgcaatatttatatttttatcctcttaa 30199796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 41956304 - 41956224
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||||||  |||||  |||||  |||||||||| |||||    
T  41956304 aacaacattttgacttttaaaaagttaaatttatcatttttcatcattttccaatgttatatttctatttttatcctctta 41956224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 30475443 - 30475517
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||||||| || ||||||||||||||||||||| ||| || ||||| ||||| | ||||| |||||||||||    
T  30475443 aacaatattttgacatttaaaaagttaaatttatcacttttcaccatttttcaatactatatttttatttttatc 30475517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 45688761 - 45688835
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||| ||| |||||||| ||||||| || ||  ||||||||||    
T  45688761 aacaacattttgacttttaaaaagttaaatttatcacttttcatcatttttcaatgctatgtttctatttttatc 45688835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 32885109 - 32885017
Alignment:
Q  279 aaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    ||||||||| ||||||||||| | |||||| |||||  || ||||||||| ||||||||| |||||||||| | |||||| ||||| |||||||    
T  32885109 aaatcaaaagtagtaggtttgcattggattcaacaaatttctaacttttataaagttaaa-ttatcatttttcttcatttctcaatacaatatt 32885017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 391
Target Start/End: Original strand, 48513637 - 48513718
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||| |||| |||||||||||||||||| | ||| ||| |||||||| ||||| |||| || ||||||||||| ||||||    
T  48513637 aacaatgttttgacttttaaaaagttaaatctttcacttttcatcatttttcaatacaatgtttttatttttatcgtcttaa 48513718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 391
Target Start/End: Complemental strand, 51018470 - 51018389
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||| |||||| |||||||||||||||||  ||| ||| || ||||| |||||||||| ||  |||||||||||||||||    
T  51018470 aacaatgttttaatttttaaaaagttaaattcttcacttttcaccatttttcaatgcaatgtttctatttttatcatcttaa 51018389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 400
Target Start/End: Complemental strand, 42627194 - 42627100
Alignment:
Q  305 gatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgttt 400  Q
    ||||||||||| |||||| ||||||||||||||||| |||||| | || |||||   ||  |||||||  |||||||||||||||||| |||||||    
T  42627194 gatttaacaattttttaa-ttttaaaaagttaaattcatcattcttcaccatttcctaaaacaatatttctatttttatcatcttaatcaatgttt 42627100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 51266909 - 51267016
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    |||| |||||| ||| | ||||||| ||  || ||||| ||||| |||||||||||||||||||||||| ||| || ||||| ||||| | |||||  ||    
T  51266909 ggaagtcaaaagtagcatgtttgtattgatttcaacaacattttgacttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttcta 51267008  T
Q  377 tttttatc 384  Q
    ||||||||    
T  51267009 tttttatc 51267016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 35808487 - 35808413
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||  ||||  |||||| |||||  ||||||||||    
T  35808487 aacaacattttgacttttaaaaagttaaatttatcatttttcacaattttccaatgctatatttctatttttatc 35808413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 391
Target Start/End: Complemental strand, 35927370 - 35927284
Alignment:
Q  305 gatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||| ||||||||||||||||||||||||||||||| ||| |||| || |||||   ||||||| |||  ||||||| || ||||||    
T  35927370 gattcaacaatattttaacttttaaaaagttaaattcatcgtttttcaccattttctaatgcaaaattgctatttttttcttcttaa 35927284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 390
Target Start/End: Original strand, 20456554 - 20456667
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||||||||| ||| | ||||| | || ||| |||||||||||||| |||||||| ||||||| || | ||| |||||||| |||||  || |||  ||    
T  20456554 ggaaatcaaaagtagcatgtttgcattgaattcaacaatattttaacatttaaaaatttaaattcataacttttcatcatttttcaataaaacatttcta 20456653  T
Q  377 tttttatcatctta 390  Q
    |||||||| |||||    
T  20456654 tttttatcctctta 20456667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 391
Target Start/End: Original strand, 55120109 - 55120190
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||| |||| ||||||||||||| |||||  ||||||| ||  |||| ||||| ||||||| | ||||||||||||||||    
T  55120109 aacaatgttttgacttttaaaaagtcaaattcttcatttttcactatttttcaatacaatattttaatttttatcatcttaa 55120190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 409
Target Start/End: Original strand, 27544524 - 27544625
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt---attatttttatcatcttaattaatgttttaagag 406  Q
    ||||||||||||||||||||||| | ||||| |||| |||  ||||||| |||||||||||||   ||| |||||||| | ||||| ||||| ||||| |    
T  27544524 aacaatattttaacttttaaaaattcaaattcatcacttt-tatcatttttcaatgcaatatttacattttttttatccttttaatcaatgtcttaaggg 27544622  T
Q  407 cac 409  Q
    |||    
T  27544623 cac 27544625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 391
Target Start/End: Original strand, 29462812 - 29462900
Alignment:
Q  303 tggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||| ||||| ||||| ||||| ||||| | |||||  ||||||| |||||||| |||||  |||||| ||||||||||| ||||||    
T  29462812 tggattcaacaacattttgactttgaaaaaataaaattcctcatttttcatcatttttcaatataatatttttatttttatcctcttaa 29462900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 39158450 - 39158346
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||||||||| ||||| ||||  | || ||| ||||||||||||| ||||||||||||||||  |||| ||| || | |||  |||| ||||||| |||    
T  39158450 ggaaatcaaaagtagtatgtttacattgaattgaacaatattttaatttttaaaaagttaaatagatcacttttcaccctttcccaatacaatattctta 39158351  T
Q  377 ttttt 381  Q
    |||||    
T  39158350 ttttt 39158346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 50514737 - 50514669
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||| ||||| ||| | ||||| | ||| || ||||| ||||||||||||||||||||||||||||||    
T  50514737 ggaaaccaaaagtagcatgtttgcattggtttcaacaacattttaacttttaaaaagttaaatttatca 50514669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 3929749 - 3929796
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaa 331  Q
    ||||||||||||||| || || ||| ||||||||||||||||||||||    
T  3929749 aaaaatagtaggtttatattgtattcaacaatattttaacttttaaaa 3929796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 9693595 - 9693528
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatc 344  Q
    |||| |||||||||| | ||||| | ||| || ||||||||||  |||||||||||||||||||||||    
T  9693595 ggaagtcaaaaatagcatgtttgcattggtttcaacaatatttcgacttttaaaaagttaaatttatc 9693528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 19329019 - 19328984
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||||||||| ||||||||||||||||||||||||    
T  19329019 aacaatattttgacttttaaaaagttaaatttatca 19328984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 391
Target Start/End: Complemental strand, 31010516 - 31010437
Alignment:
Q  312 caatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||| |||| |||||||||||||||||||  ||| |||  ||||||| ||||| |||| ||  |||||||||||||||||    
T  31010516 caatgttttgacttttaaaaagttaaattcttcactttttatcatttctcaatacaatgtttctatttttatcatcttaa 31010437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 384
Target Start/End: Original strand, 54339134 - 54339204
Alignment:
Q  313 aatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||||| ||||||||||| |||||||||||||||| || ||||| ||||||  |||||  ||||||||||    
T  54339134 aatattttgacttttaaaaaattaaatttatcatttt-caccatttttcaatgttatatttatatttttatc 54339204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 2362614 - 2362723
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaactttt--aaaaagttaaatttatcattttacatcatttgtcaatgcaatattat 374  Q
    |||| |||||| ||||| ||||| | ||| |||||||| ||||| ||||||  ||||| |||||||||||| ||| || |||||  |||| | ||||| |    
T  2362614 ggaagtcaaaagtagtatgtttgcattggttttaacaacattttgacttttaaaaaaaattaaatttatcacttttcaccattttccaatactatatttt 2362713  T
Q  375 tatttttatc 384  Q
    ||||||||||    
T  2362714 tatttttatc 2362723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 340
Target Start/End: Original strand, 3472137 - 3472171
Alignment:
Q  306 atttaacaatattttaacttttaaaaagttaaatt 340  Q
    |||||||||| ||||||||||||||||||||||||    
T  3472137 atttaacaatgttttaacttttaaaaagttaaatt 3472171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 20811278 - 20811316
Alignment:
Q  307 tttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  20811278 tttaacaacattttgacttttaaaaagttaaatttatca 20811316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 26040451 - 26040377
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||||||| ||||||||||||||||| |||||| ||| || |||||  |||| | |||||  ||||||||||    
T  26040451 aacaatattttgacttttaaaaagttaaacttatcacttttcaccattttccaatactatatttctatttttatc 26040377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 33803397 - 33803470
Alignment:
Q  317 ttttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    ||||||||||||||| ||||||||||| ||||| ||| |||| ||||| |||||||  ||||||| || ||||||    
T  33803397 ttttaacttttaaaa-gttaaatttattatttttcataatttttcaatacaatatttatatttttgtcctcttaa 33803470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 33951703 - 33951753
Alignment:
Q  295 gtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||||| ||| || ||||| ||||||| ||||||||||||||||||||||    
T  33951703 gtttgtattggtttcaacaacattttaatttttaaaaagttaaatttatca 33951753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 34016643 - 34016717
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| ||||||||||||||||||| |||| ||| || |||||  |||||| |||||  ||||||||||    
T  34016643 aacaacattttgacttttaaaaagttaaattcatcacttttcaccattttccaatgctatatttctatttttatc 34016717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 40436099 - 40436173
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||||||| |  ||||||||||||||||||| ||||| |||||||| | ||||| || || | |||||||||    
T  40436099 aacaatattttgatatttaaaaagttaaatttattatttttcatcattttttaatgctattttttcatttttatc 40436173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 53567044 - 53567011
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttat 343  Q
    ||||| ||||||||||||||||||||||||||||    
T  53567044 aacaacattttaacttttaaaaagttaaatttat 53567011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 3684579 - 3684619
Alignment:
Q  324 ttttaaaaagttaaatttatcattttacatcatttgtcaat 364  Q
    ||||||||||||||||| |||||||| |||||||| |||||    
T  3684579 ttttaaaaagttaaattgatcatttttcatcatttctcaat 3684619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 25928436 - 25928492
Alignment:
Q  289 tagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||||||||||| ||  || |||||||||||||| ||||||| |||||||| ||||    
T  25928436 tagtaggtttgtattgcgttcaacaatattttaacatttaaaacgttaaattcatca 25928492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 33726365 - 33726472
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||||||||||||| | ||||||| ||  || ||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||| | ||||| |||    
T  33726365 ggaaatcaaaaatagcatgtttgtattgatttcaacaatattttaacttttagaaagttaaatttattatttttcaccatttttcaatactatattttta 33726464  T
Q  377 tttttatc 384  Q
    ||||||||    
T  33726465 tttttatc 33726472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 408
Target Start/End: Original strand, 2239573 - 2239698
Alignment:
Q  283 caaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttta 382  Q
    ||||| |||||  |||||| |||||| ||||||||||||||||||||||||||||||| ||||||||  | ||||| ||| |||||||||  ||| ||||    
T  2239573 caaaagtagtatatttgtattggattcaacaatattttaacttttaaaaagttaaattcatcattttttaccatttttcattgcaatatttctatcttta 2239672  T
Q  383 tcatcttaattaatgttttaagagca 408  Q
    || ||||||  |||||  ||||||||    
T  2239673 tcctcttaaccaatgtcctaagagca 2239698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 386
Target Start/End: Original strand, 44173112 - 44173213
Alignment:
Q  285 aaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||| || ||||||| ||| || ||||| ||||||| ||||||||| |||||||||||||||| |||||||| ||||||| |||||  ||||||||||    
T  44173112 aaaataatatgtttgtattggtttcaacaacattttaatttttaaaaaattaaatttatcatttttcatcatttttcaatgctatatttctatttttatc 44173211  T
Q  385 at 386  Q
    ||    
T  44173212 at 44173213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 8326996 - 8327079
Alignment:
Q  308 ttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||| ||||||||||||||||||||||||||||| ||| ||| ||| |||| |||| |||||||| ||||||||||| ||||||    
T  8326996 ttaataatattttaacttttaaaaagttaaatttttcacttttcattatttctcaaagcaatatttttatttttatcctcttaa 8327079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 30831631 - 30831709
Alignment:
Q  305 gatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttat 383  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||  || |||| | |||||||||||  |||||||||    
T  30831631 gatttaacaatatttttacttttaaaaagttaaattcatcattttttataattttttaatgcaatatttctatttttat 30831709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 13997995 - 13997922
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttat 383  Q
    ||||||||||||| |||||||||||||||||||||||||| ||  |||| ||||||| |||||  |||||||||    
T  13997995 aacaatattttaatttttaaaaagttaaatttatcatttttcacaatttttcaatgctatatttctatttttat 13997922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 43140411 - 43140334
Alignment:
Q  313 aatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    |||||||| | |||||||||||||||||||||||||| | |||||| ||||||  ||||| ||||||||||| |||||    
T  43140411 aatatttttaattttaaaaagttaaatttatcatttttcgtcatttttcaatgttatatttttatttttatcctctta 43140334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 277 - 389
Target Start/End: Original strand, 2136421 - 2136533
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||| ||||| ||||||||||||| || ||| ||||||||||| |||||| |||||| |||||   || ||| ||||||||  ||||||||||||  ||    
T  2136421 ggaaaccaaaattagtaggtttgtattgtattcaacaatattttcacttttcaaaagtcaaattctccacttttcatcattttccaatgcaatatttcta 2136520  T
Q  377 tttttatcatctt 389  Q
    |||||||| ||||    
T  2136521 tttttatcctctt 2136533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 17603835 - 17603903
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||||||||||||||||||||||||||  ||||||| ||||||| |||||  ||||||||||    
T  17603835 attttgacttttaaaaagttaaatttatcattttttatcatttttcaatgctatatttctatttttatc 17603903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 34512638 - 34512712
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    |||||||||| ||||||| || |||||||||| |||||||||||||||||| |||| ||||| ||| || |||||    
T  34512638 aaaaatagtaagtttgtattgaatttaacaattttttaacttttaaaaagtcaaatctatcacttttcaccattt 34512712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 41436496 - 41436570
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||| ||||||| ||| |||||||| ||||| | ||||| |||||||||||    
T  41436496 aacaacattttgacttttaaaaagttaagtttatcacttttcatcatttttcaatactatatttttatttttatc 41436570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 391
Target Start/End: Original strand, 11659280 - 11659361
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    ||||||||||||| |||||||||||||||||  ||| ||| ||  |||| ||||| ||||||| ||||||||||| ||||||    
T  11659280 aacaatattttaatttttaaaaagttaaattcttcacttttcactatttttcaatacaatatttttatttttatcctcttaa 11659361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 33864373 - 33864453
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||||||||| |||||||||| ||||||||||| | ||| || |||||  |||||| ||||| ||||||||||| |||||    
T  33864373 aacaatattttgacttttaaaatgttaaatttattacttttcaccattttccaatgcgatatttttatttttatcctctta 33864453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 409
Target Start/End: Complemental strand, 34220737 - 34220638
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgttttaagagcac 409  Q
    ||||||||||||||||||||||| ||||||| |||| ||| || || ||  |||||||| |||  |||||||||| ||||||  ||||| ||||| ||||    
T  34220737 aacaatattttaacttttaaaaacttaaattcatcacttttcaccacttcccaatgcaagatttctatttttatcctcttaaccaatgtcttaagggcac 34220638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 34334267 - 34334172
Alignment:
Q  295 gtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||||| |||||| ||||||||||||| || ||||||||| ||||| |||||||  | |||||   ||| |||||||  ||||||||||||||||    
T  34334267 gtttgtattggattcaacaatattttaatttgtaaaaagtttaatttgtcattttttaccattttcaaatacaatatttctatttttatcatctta 34334172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 35445410 - 35445307
Alignment:
Q  282 tcaaaaatagtaggtttgtaatggatttaacaatattttaactttt-aaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttt 380  Q
    |||||| ||| | ||||||| ||| || ||||||||||| |||||| |||||||||||||||||| ||| || ||||| ||||||  |||||  ||||||    
T  35445410 tcaaaagtagcatgtttgtattggtttcaacaatattttgacttttgaaaaagttaaatttatcacttttcaccatttttcaatgttatatttatatttt 35445311  T
Q  381 tatc 384  Q
    ||||    
T  35445310 tatc 35445307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 6999220 - 6999294
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||||||| || |||||  |||| | |||||  ||||||||||    
T  6999220 aacaacattttgacttttaaaaagttaaatttatcatttttcaccattttccaatactatatttctatttttatc 6999294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 41890235 - 41890182
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaa 330  Q
    ||||| ||||| ||||||||||| | |||||| |||||||||||||||||||||    
T  41890235 ggaaaccaaaagtagtaggtttgcattggattcaacaatattttaacttttaaa 41890182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 15004930 - 15004990
Alignment:
Q  295 gtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatca 355  Q
    ||||||| ||| || ||||| ||||||| |||||||||||||||||||||| ||| |||||    
T  15004930 gtttgtattggtttcaacaacattttaatttttaaaaagttaaatttatcacttttcatca 15004990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 44299772 - 44299692
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||||||||| |||||||||| ||||||||||||| ||| || ||||| || | || |||||  |||||||||| |||||    
T  44299772 aacaatattttgacttttaaaatgttaaatttatcacttttcaccatttttcgaggctatatttctatttttatcctctta 44299692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 32949521 - 32949564
Alignment:
Q  306 atttaacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||    
T  32949521 atttaacaatattttaatttttaaaaagtcaaattcatcatttt 32949564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 391
Target Start/End: Original strand, 2805373 - 2805482
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaactttt--aaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttt 381  Q
    |||| ||||| ||||||| | |||| ||||||||||| ||||||  ||||||||||||| |||| |||  || |||| ||||| ||||| |  |||||||    
T  2805373 aaaagtagtatgtttgtattagattcaacaatattttgacttttaaaaaaagttaaattcatcacttttaattatttttcaatacaatacttatattttt 2805472  T
Q  382 atcatcttaa 391  Q
    ||| ||||||    
T  2805473 atcctcttaa 2805482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 10900373 - 10900267
Alignment:
Q  278 gaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattat 377  Q
    ||||||||||||||||  |||  | || ||| || |||||||||||||||||||| | ||||| |||| |||  ||||||| ||||||  |||||  |||    
T  10900373 gaaatcaaaaatagtatatttacattgaattcaataatattttaacttttaaaaaataaaattcatcactttttatcatttttcaatgtgatatttctat 10900274  T
Q  378 ttttatc 384  Q
    |||||||    
T  10900273 ttttatc 10900267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 39085883 - 39085809
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||| |||  |||||||  |||||  |||||  ||||||||||    
T  39085883 aacaacattttgacttttaaaaagttaaatttatcactttttatcattttccaatgttatatttctatttttatc 39085809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 464819 - 464852
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||||||||||||||||||||| ||||||||||    
T  464819 attttaacttttaaaaagttaaaattatcatttt 464852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 384
Target Start/End: Complemental strand, 39401640 - 39401552
Alignment:
Q  295 gtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||| ||| || ||||| ||||| ||||||||||||||||| |||||| ||| || ||||| ||||||  |||||  ||||||||||    
T  39401640 gtttgtattggtttcaacaaaattttgacttttaaaaagttaaa-ttatcacttttcaccatttttcaatgttatatttctatttttatc 39401552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 9201586 - 9201538
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||| ||||| |||||||||||||||||||||||| ||| || |||||    
T  9201586 aacaacattttgacttttaaaaagttaaatttatcacttttcaccattt 9201538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 17095157 - 17095109
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||| ||||| |||||||||||||||||||||||| ||| || |||||    
T  17095157 aacaacattttgacttttaaaaagttaaatttatcacttttcaccattt 17095109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 34883505 - 34883533
Alignment:
Q  306 atttaacaatattttaacttttaaaaagt 334  Q
    |||||||||||||||||||||||||||||    
T  34883505 atttaacaatattttaacttttaaaaagt 34883533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 301 - 391
Target Start/End: Complemental strand, 27127607 - 27127517
Alignment:
Q  301 aatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||||| |||||||| || ||||||||||||||||||| |||||||| || ||||| ||||| |||||||  |||||||||||||||||    
T  27127607 aatggattcaacaatatcttgacttttaaaaagttaaattcatcatttttcaccatttctcaatacaatatttctatttttatcatcttaa 27127517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 311 - 391
Target Start/End: Original strand, 12775129 - 12775209
Alignment:
Q  311 acaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||| || | ||| |||||||  |||||||||| ||||||    
T  12775129 acaatattttaagttttaaaaagttaaattaatcatttttcatcagtttttaatacaatatttatatttttatcctcttaa 12775209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 381
Target Start/End: Complemental strand, 7875272 - 7875201
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttt 381  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||||||  |||||| |||||  |||||||    
T  7875272 aacaatattttgacttttaaaaagttaaatttatcacttttcatcattttccaatgctatatttctattttt 7875201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 5578292 - 5578366
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||||||| |||||||||||||||||||||||| ||  ||| |||| ||||||| |||||  ||||||||||    
T  5578292 aacaatattttgacttttaaaaagttaaatttatcaattctcattatttttcaatgctatatttctatttttatc 5578366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 306 - 372
Target Start/End: Complemental strand, 20775088 - 20775022
Alignment:
Q  306 atttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    |||||||||||||||||| ||||||||| ||||||||| ||||| ||  |||| |||||||||||||    
T  20775088 atttaacaatattttaacctttaaaaagataaatttattatttttcacaatttttcaatgcaatatt 20775022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 7880518 - 7880470
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  7880518 aacaatattttgacttttaaaaagttaaatttatcacttttcatcattt 7880470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 8324195 - 8324115
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||  |||| ||||||| || ||  |||||||||| |||||    
T  8324195 aacaacattttaatttttaaaaagttaaatttatcatttttcacaatttctcaatgctatgtttctatttttatcttctta 8324115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 384
Target Start/End: Original strand, 12175584 - 12175651
Alignment:
Q  317 ttttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||||||||||||||||||||||||| |||  ||||||| ||||| | |||||  ||||||||||    
T  12175584 ttttaacttttaaaaagttaaatttatcagtttttatcatttttcaatactatatttatatttttatc 12175651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 10855450 - 10855504
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaat 364  Q
    ||||| ||||| |||||||||||||||||||||||| ||| |||||||| |||||    
T  10855450 aacaacattttgacttttaaaaagttaaatttatcacttttcatcatttttcaat 10855504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 28014633 - 28014715
Alignment:
Q  290 agtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    |||| ||||| | |||||| ||||||||||||||||||||||||| ||| | |||||||| || |||||  |||| |||||||    
T  28014633 agtaagtttgcattggattcaacaatattttaacttttaaaaagtcaaactcatcatttttcaccatttcccaatacaatatt 28014715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 26572201 - 26572120
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    |||| |||||| ||| | ||||| | ||| |||||||||||||||||||||||||  |||||||||||| |||  |||||||    
T  26572201 ggaagtcaaaagtagcatgtttgcattggttttaacaatattttaacttttaaaatattaaatttatcactttttatcattt 26572120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 397
Target Start/End: Complemental strand, 12226455 - 12226335
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||| |||||||||||  |||  | || ||| |||||| |||| ||||| |||||||||||||  ||| |||  ||||||| ||||| |||| ||  ||    
T  12226455 ggaaaccaaaaatagtatatttacattgaattcaacaatgtttttactttcaaaaagttaaattcttcacttttaatcatttctcaatacaatgtttcta 12226356  T
Q  377 tttttatcatcttaattaatg 397  Q
    ||||||||||||||| |||||    
T  12226355 tttttatcatcttaactaatg 12226335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 32251345 - 32251392
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaa 331  Q
    |||||||||||||||||| || ||| |||||| |||||||||||||||    
T  32251345 aaaaatagtaggtttgtattgaattcaacaattttttaacttttaaaa 32251392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 6866933 - 6867007
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||| ||||||||||||| ||| || |||||   ||||| ||||| |||||||||||    
T  6866933 aacaacattttgacttttaaaaggttaaatttatcacttttcaccattttcaaatgctatatttttatttttatc 6867007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 12191511 - 12191585
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| ||||||||||| |||||||||||| ||| || |||||  |||||| |||||  ||||||||||    
T  12191511 aacaacattttgacttttaaaaaattaaatttatcacttttcaccatttaccaatgctatatttctatttttatc 12191585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 372
Target Start/End: Original strand, 26539104 - 26539193
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatatttt-aacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    |||||||||| ||||| | || ||| |||||| |||| || ||||||||||| |||| ||||| ||| |||||||| ||||| |||||||    
T  26539104 aaaaatagtaagtttgcattgaattcaacaatttttttaatttttaaaaagtcaaatctatcaattttcatcatttttcaatacaatatt 26539193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 31490807 - 31490746
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    |||||||||| ||||||| || ||| |||||| ||||||||||| |||| |||||| |||||    
T  31490807 aaaaatagtaagtttgtattgaattcaacaattttttaactttttaaaaattaaatctatca 31490746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 7274305 - 7274257
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||| |||||||||||||||| ||||||||||||| ||| | ||||||    
T  7274305 aacaacattttaacttttaaaatgttaaatttatcacttttcgtcattt 7274257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 21186141 - 21186073
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||||||||| ||| |  |||| | | |||| || |||||||||||||||||||||||||||| ||||    
T  21186141 ggaaatcaaaagtagcaattttgcattagattcaataatattttaacttttaaaaagttaaattcatca 21186073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 29692426 - 29692358
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||| |||||||||||||||||||| ||| || ||||| ||||| | |||||  ||||||||||    
T  29692426 attttgactcttaaaaagttaaatttatcacttttcaccatttttcaatactatatttctatttttatc 29692358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 4308794 - 4308866
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||| ||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||| ||||||||    
T  4308794 ggaaaccaaaaatagtaggtttgtattggattcaacactattttaacttttataaagttaaattcatcatttt 4308866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 398
Target Start/End: Complemental strand, 31596522 - 31596424
Alignment:
Q  300 taatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgt 398  Q
    |||| |||||||||||||||| ||||||||||||| ||||| |||||||| || ||||| | ||  |||||||  |||||||||||||||||| |||||    
T  31596522 taatagatttaacaatattttgacttttaaaaagtaaaattcatcatttttcaccattttttaacacaatatttctatttttatcatcttaatcaatgt 31596424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 6433559 - 6433635
Alignment:
Q  307 tttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttat 383  Q
    ||||||||||||||||||||||||||||||||||||| | |||  | ||||| ||||||| ||||| ||||||||||    
T  6433559 tttaacaatattttaacttttaaaaagttaaatttataactttttaccatttttcaatgctatatttttatttttat 6433635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 25249432 - 25249360
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttta 382  Q
    ||||||||||| |||||||||||||||||||||||| ||| || |||||  |||||| ||||| |||||||||    
T  25249432 aacaatattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttttattttta 25249360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 33741565 - 33741526
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33741565 aacaatattttaacttttaaaaagttaaatttatcatttt 33741526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 35930168 - 35930234
Alignment:
Q  324 ttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    |||||||||||||||||||| ||||| |||||||| ||||| | ||||| ||||||||||| |||||    
T  35930168 ttttaaaaagttaaatttattatttttcatcatttttcaatactatatttttatttttatcttctta 35930234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 391
Target Start/End: Complemental strand, 11332885 - 11332804
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||| |||| |||||||||||||||||||  ||| |||||| ||||| ||||| |||||||  |||||||||| ||||||    
T  11332885 aacaatgttttgacttttaaaaagttaaattcttcactttacaccatttctcaatacaatatttctatttttatcttcttaa 11332804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 11264426 - 11264486
Alignment:
Q  289 tagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||||||||||| |||||| |||||||| | |||||||||||||||||||| || |||||    
T  11264426 tagtaggtttgtattggattcaacaatatatcaacttttaaaaagttaaattcattatttt 11264486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 17320071 - 17320015
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatt 340  Q
    |||||||||| ||||  |||| || ||||||||||||||||||||||||||||||||    
T  17320071 aaaaatagtatgtttacaatgaatctaacaatattttaacttttaaaaagttaaatt 17320015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 26892807 - 26892843
Alignment:
Q  313 aatattttaacttttaaaaagttaaatttatcatttt 349  Q
    |||||||||||||||||||||||||||||||||||||    
T  26892807 aatattttaacttttaaaaagttaaatttatcatttt 26892843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 404
Target Start/End: Complemental strand, 11295548 - 11295461
Alignment:
Q  317 ttttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgttttaag 404  Q
    |||| ||||||||||||||||||| |||||||| |||||||| ||||| |||| ||  |||||| |||||| |||  ||||| |||||    
T  11295548 ttttgacttttaaaaagttaaattcatcatttttcatcatttctcaatacaatgtttatattttcatcatcgtaaccaatgtcttaag 11295461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 398
Target Start/End: Complemental strand, 26195479 - 26195376
Alignment:
Q  295 gtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaatta 394  Q
    ||||||| ||| || ||||| |||||||||||||||||||||||||||||| ||| ||  ||||  |||||  |||||  ||||||||||  |||| |||    
T  26195479 gtttgtattggtttcaacaacattttaacttttaaaaagttaaatttatcacttttcacaattttccaatgttatatttctatttttatccccttattta 26195380  T
Q  395 atgt 398  Q
    ||||    
T  26195379 atgt 26195376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 26672775 - 26672882
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||||||||||||  | |||| || ||| || ||||| ||||| ||||||||||| ||||||||||| ||||  |||||||  |||||| |||||  ||    
T  26672775 ggaaatcaaaaatacgatgtttatattggtttcaacaacattttgacttttaaaaaattaaatttatccttttttatcattttccaatgctatatttcta 26672874  T
Q  377 tttttatc 384  Q
    ||||||||    
T  26672875 tttttatc 26672882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 31301866 - 31301956
Alignment:
Q  313 aatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgttttaa 403  Q
    ||||||||||| || |||||||||||||||| ||||| || ||||| | ||| |||||||  |||||| ||| |||||| |||| ||||||    
T  31301866 aatattttaacattgaaaaagttaaatttattatttttcaccatttcttaattcaatatttatattttcatcctcttaactaatattttaa 31301956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 5129550 - 5129485
Alignment:
Q  307 tttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    |||| ||| ||||| ||||||||||| |||||||||||| ||| |||||||| ||||||| |||||    
T  5129550 tttatcaacattttgacttttaaaaaattaaatttatcacttttcatcatttttcaatgctatatt 5129485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 37433258 - 37433338
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatg 365  Q
    |||| ||||| ||||| | ||| || ||||| ||||||||||| |||||||||||||||||| ||| |||||||| ||||||    
T  37433258 aaaagtagtatgtttgcattggtttcaacaacattttaacttt-aaaaagttaaatttatcacttttcatcatttttcaatg 37433338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 38870024 - 38870109
Alignment:
Q  312 caatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatg 397  Q
    ||||||||| |||||||||| ||| ||||  ||| ||| ||||||||  ||||||||| ||  |||||||||||||||||| ||||    
T  38870024 caatattttgacttttaaaatgttgaattcttcacttttcatcattttccaatgcaatgtttctatttttatcatcttaatcaatg 38870109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 39972276 - 39972195
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||| ||||||||||| ||||| | || ||| |||||| |||||||||||||||||| ||||| |||| ||| || |||||    
T  39972276 ggaaaccaaaaatagtatgtttgcattgaattgaacaattttttaacttttaaaaagtcaaattcatcacttttcaccattt 39972195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 7532772 - 7532877
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||| ||||| ||||||||||| | |||||| |||||||  ||||||||||||||  |||||| |||| ||| || |||||  |||| |||||||  ||    
T  7532772 ggaaaccaaaagtagtaggtttgaattggattcaacaata--ttaacttttaaaaacctaaattcatcacttttcaccattttccaatacaatatttcta 7532869  T
Q  377 tttttatc 384  Q
    ||||||||    
T  7532870 tttttatc 7532877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 45338036 - 45338096
Alignment:
Q  324 ttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||||||||||||||||||||||| || ||||| ||||||  |||||  ||||||||||    
T  45338036 ttttaaaaagttaaatttatcatttttcaccatttttcaatgttatatttctatttttatc 45338096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 7473587 - 7473630
Alignment:
Q  306 atttaacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||    
T  7473587 atttaacaatattttaacttttaaaaagtcaaatgcatcatttt 7473630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 338
Target Start/End: Original strand, 30351602 - 30351637
Alignment:
Q  303 tggatttaacaatattttaacttttaaaaagttaaa 338  Q
    |||||| |||||||||||||||||||||||||||||    
T  30351602 tggattcaacaatattttaacttttaaaaagttaaa 30351637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 35455253 - 35455316
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatt 340  Q
    ||||||||||| ||||| ||||||| |||||| || | |||||| ||||||||||| |||||||    
T  35455253 ggaaatcaaaattagtatgtttgtattggattcaatattattttgacttttaaaaaattaaatt 35455316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 35973967 - 35973928
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  35973967 aacaatattttatcttttaaaaaattaaatttatcatttt 35973928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 40550468 - 40550381
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatg 397  Q
    |||||||||||| |||||||||| ||||||| |  ||||| |||||||| | ||| |||||||   ||||||||| |||||| |||||    
T  40550468 aacaatattttatcttttaaaaatttaaattcactatttttcatcatttcttaatacaatatttaaatttttatcctcttaactaatg 40550381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 6939176 - 6939250
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||| ||  || ||||| ||||||  |||||  ||||||||||    
T  6939176 aacaacattttgacttttaaaaagttaaatttatcacttgtcaccatttttcaatgttatatttctatttttatc 6939250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 7444263 - 7444317
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaa 331  Q
    ||||| ||||| ||||||||||| | | |||| ||||||||||||||||||||||    
T  7444263 ggaaaccaaaagtagtaggtttgcattagattcaacaatattttaacttttaaaa 7444317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 18068980 - 18069054
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| || ||||||||||||||||||||| ||| || |||||  |||||| |||||  ||||||||||    
T  18068980 aacaacattttgacctttaaaaagttaaatttatcacttttcaccattttccaatgctatatttctatttttatc 18069054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 14855478 - 14855441
Alignment:
Q  307 tttaacaatattttaacttttaaaaagttaaatttatc 344  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  14855478 tttaacaacattttaacttttaaaatgttaaatttatc 14855441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 4989957 - 4990025
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| || ||||||||||||||||||||||||| ||  ||||  |||||| |||||  ||||||||||    
T  4989957 attttgacatttaaaaagttaaatttatcatttttcactattttccaatgctatatttctatttttatc 4990025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 19389434 - 19389366
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||||||||| ||| | ||||| | ||  || ||| ||||||| ||||||||||||||||||||||||    
T  19389434 ggaaatcaaaagtagcatgtttgcattgttttcaacgatattttgacttttaaaaagttaaatttatca 19389366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 20212513 - 20212445
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||| ||||| ||| ||||||  | |||||| ||| ||||||||||||||||||| ||||||| ||||    
T  20212513 ggaaaccaaaagtagcaggtttacattggattcaacgatattttaacttttaaaaacttaaattcatca 20212445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 19894803 - 19894907
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||||||||| ||  ||||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||  | ||||| | |||||||||||  ||    
T  19894803 ggaaatcaaaagtataaggtttgaattggatttaacaatattttaacttttaaaaagttaaattcatcatatttaaccattttttaatgcaatatttcta 19894902  T
Q  377 ttttt 381  Q
    |||||    
T  19894903 ttttt 19894907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 3015147 - 3015039
Alignment:
Q  304 ggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgttttaa 403  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||  ||||   ||  |||||||  |||||||||||||||||   ||| |||||    
T  3015147 ggattcaacaatattttaacttttaaaaagttaaattaatcattttacactattttctaacacaatatttctatttttatcatcttaacagatgctttaa 3015048  T
Q  404 gagcactct 412  Q
    | |||||||    
T  3015047 gggcactct 3015039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 412
Target Start/End: Original strand, 17168667 - 17168796
Alignment:
Q  283 caaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttta 382  Q
    ||||| ||||||||||| || | ||| | ||||||||||| ||||||||||| ||||| |||||||| || | ||| |||||||||||||  ||||| ||    
T  17168667 caaaagtagtaggtttgcaaggaattcagcaatattttaaattttaaaaagtcaaattcatcatttttcaccgtttttcaatgcaatatttctatttgta 17168766  T
Q  383 tcatcttaattaatgttttaagagcactct 412  Q
    || ||||||  ||||  ||||| |||||||    
T  17168767 tcttcttaaccaatgccttaagtgcactct 17168796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 310 - 398
Target Start/End: Complemental strand, 3242044 - 3241956
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgt 398  Q
    |||||||||||||||||||||||||| |||| |||| ||| ||  | ||  |||||||||||| ||||||||||| ||||||| |||||    
T  3242044 aacaatattttaacttttaaaaagtttaattcatcaattttcactacttcccaatgcaatatttttatttttatcgtcttaatcaatgt 3241956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 39567888 - 39567995
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    |||| |||||| ||| | ||||| | ||| || |||||| |||| | |||||||||||||||||||||||||| ||||||||  |||||| |||||  ||    
T  39567888 ggaagtcaaaagtagcatgtttgcattggtttcaacaatgttttgatttttaaaaagttaaatttatcatttttcatcattttccaatgctatatttata 39567987  T
Q  377 tttttatc 384  Q
    ||||||||    
T  39567988 tttttatc 39567995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 5151507 - 5151581
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||||||  |||||  |||||  ||||||||||    
T  5151507 aacaacattttgacttttaaaaagttaaatttatcatttttcatcattttccaatgttatatttctatttttatc 5151581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 391
Target Start/End: Complemental strand, 38610383 - 38610302
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||| |||| |||||||||||||||||||  ||| |||  ||||||| |||||||||| ||  |||||||||||||||||    
T  38610383 aacaatgttttgacttttaaaaagttaaattcttcactttttatcatttttcaatgcaatgtttctatttttatcatcttaa 38610302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 1479221 - 1479153
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| |||||||||||||||||||||||| ||| ||| |||| ||||||| |||||  ||||||||||    
T  1479221 attttgacttttaaaaagttaaatttatcacttttcattatttttcaatgctatatttctatttttatc 1479153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 17605965 - 17606049
Alignment:
Q  296 tttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttt 380  Q
    |||||| || ||| || |||||||||||||||||||||||||||| || ||||| |||   || ||||||||||||| |||||||    
T  17605965 tttgtattgaattcaataatattttaacttttaaaaagttaaattcattatttttcattgcttttcaatgcaatatttttatttt 17606049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 1759832 - 1759915
Alignment:
Q  307 tttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    |||||||| ||||| |||||||||||||||||||||||| ||| |  ||||| ||||| | |||||  |||||||||| |||||    
T  1759832 tttaacaacattttgacttttaaaaagttaaatttatcacttttctccatttttcaatactatatttctatttttatcctctta 1759915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 372
Target Start/End: Complemental strand, 20184672 - 20184577
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    ||||||||||| || || | ||||| | |||| |||||| |||||||||||||||||| ||||| |||| ||| || | ||| |||||||||||||    
T  20184672 ggaaatcaaaagtaatatgattgtattagattcaacaatgttttaacttttaaaaagtgaaattcatcacttttcaccgtttctcaatgcaatatt 20184577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 39693028 - 39693067
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  39693028 aacaatattttaacttttaaaaagataaatttatcatttt 39693067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 338855 - 338781
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||||||| | |||||||||||||||||||||| |||  ||||||| |||||   ||||| |||||||||||    
T  338855 aacaatattttgatttttaaaaagttaaatttatcactttttatcatttttcaatatcatatttttatttttatc 338781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 1447028 - 1446986
Alignment:
Q  307 tttaacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  1447028 tttaacaatattttaacttttaaatagttaaattcatcatttt 1446986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 8410145 - 8410199
Alignment:
Q  295 gtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||||| ||| ||||| || ||||| ||||||||||||||||||||||||||||    
T  8410145 gtttgtattggttttaataacattttgacttttaaaaagttaaatttatcatttt 8410199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 34546796 - 34546870
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||||||||||||||| |||||||||||| ||| || ||||| ||||||  |||||  ||||||||||    
T  34546796 aacaacattttaacttttaaaaaattaaatttatcacttttcaccatttttcaatgttatatttctatttttatc 34546870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 372
Target Start/End: Original strand, 12914166 - 12914255
Alignment:
Q  283 caaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    ||||| ||||| ||||| | ||| || ||||||||||| | ||||||||| |||||||||||| ||| || ||||| ||||||| |||||    
T  12914166 caaaagtagtatgtttgcattggtttcaacaatattttgatttttaaaaaattaaatttatcacttttcaccatttttcaatgctatatt 12914255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 392
Target Start/End: Complemental strand, 8454637 - 8454529
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttat 383  Q
    ||||||| |||||||| | ||||||||| ||||||||||  |||||||||||||||  |||| |||  ||||| |   |||  |||||| ||||||||||    
T  8454637 aaaaataataggtttgcattggatttaataatattttaatgtttaaaaagttaaatccatcactttttatcatcttctaatataatatttttatttttat 8454538  T
Q  384 catcttaat 392  Q
    | |||||||    
T  8454537 cttcttaat 8454529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 25017415 - 25017347
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    |||| |||||| ||| | ||||||| ||| || ||| ||||||| ||||||||||||||||||||||||    
T  25017415 ggaagtcaaaagtagcatgtttgtattggtttcaacgatattttgacttttaaaaagttaaatttatca 25017347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 25568369 - 25568309
Alignment:
Q  324 ttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||||||||||||| ||||| ||| |||||||| ||||||| |||||  ||||||||||    
T  25568369 ttttaaaaagttaaatgtatcacttttcatcatttttcaatgctatatttatatttttatc 25568309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 678435 - 678498
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatt 340  Q
    ||||| ||||| ||| ||||||  |||||||| |||||| ||||||||||||||| ||||||||    
T  678435 ggaaaccaaaattagcaggtttacaatggattcaacaattttttaacttttaaaaggttaaatt 678498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 338
Target Start/End: Complemental strand, 6823851 - 6823816
Alignment:
Q  303 tggatttaacaatattttaacttttaaaaagttaaa 338  Q
    |||||| |||||||||||||||||||||||||||||    
T  6823851 tggattcaacaatattttaacttttaaaaagttaaa 6823816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 39335459 - 39335526
Alignment:
Q  278 gaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    |||| ||||| || || ||||||| |||||| ||||| ||||| ||||||||||||||||||| ||||    
T  39335459 gaaaccaaaattattatgtttgtattggattcaacaacattttgacttttaaaaagttaaattcatca 39335526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 37243865 - 37243939
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||||| |||||||||||||||||||||| ||| || |||||  ||||   ||||| |||||||||||    
T  37243865 aacaacattttaatttttaaaaagttaaatttatcacttttcaccattttccaatattatatttttatttttatc 37243939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 39042126 - 39042052
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||||||||||||||| ||||||| | |||||| ||| ||||  |||||  ||||| |||||||||||    
T  39042126 aacaacattttaacttttaaaaaattaaattaaccatttttcattattttacaatgttatatttttatttttatc 39042052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 43414155 - 43414081
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| | ||||||||||||||||| |||||||| || |||||  |||||| |||||  ||||||||||    
T  43414155 aacaacattttgatttttaaaaagttaaattgatcatttttcaccattttccaatgctatatttctatttttatc 43414081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 4962607 - 4962534
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttat 383  Q
    ||||| ||||| ||||| |||||||||||||||||| ||| ||||||||  |||||  |||||  |||||||||    
T  4962607 aacaacattttgactttaaaaaagttaaatttatcacttttcatcattttccaatgttatatttctatttttat 4962534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 8987432 - 8987469
Alignment:
Q  312 caatattttaacttttaaaaagttaaatttatcatttt 349  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8987432 caatattttaacttttaaaacgttaaattcatcatttt 8987469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 37307606 - 37307671
Alignment:
Q  285 aaaatagtaggtttgtaatggatttaacaatatttt-aacttttaaaaagttaaatttatcatttt 349  Q
    ||||||||||||||||| | || | || |||||||| ||||||||||||| |||||| ||||||||    
T  37307606 aaaatagtaggtttgtattagaatcaataatatttttaacttttaaaaaggtaaattcatcatttt 37307671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 39167610 - 39167702
Alignment:
Q  306 atttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgtt 399  Q
    |||||||||| |||| | |||||||||||||||||| | | ||| || |||||  |||| |||| ||  ||||||||||||||||| |||||||    
T  39167610 atttaacaatgttttgatttttaaaaagttaaattt-ttacttttcaccattttccaatacaatgtttctatttttatcatcttaactaatgtt 39167702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 2970148 - 2970196
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    |||||| |||||||||||||||| |||||| ||||||||| ||| ||||    
T  2970148 aacaattttttaacttttaaaaaattaaatctatcatttttcattattt 2970196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 4422055 - 4421975
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||| ||||| | || ||||||||||||||||||| ||| || |||||  |||||| |||||  |||||||||| |||||    
T  4422055 aacaacattttgatttgtaaaaagttaaatttatcacttttcaccattttccaatgctatatttctatttttatcctctta 4421975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 27823283 - 27823351
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||| |||||||||||||||||||||| ||| || |||||  |||| | |||||  ||||||||||    
T  27823283 attttaatttttaaaaagttaaatttatcacttttcaccattttccaatactatatttctatttttatc 27823351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 28599738 - 28599706
Alignment:
Q  317 ttttaacttttaaaaagttaaatttatcatttt 349  Q
    |||||||||||||||||| ||||||||||||||    
T  28599738 ttttaacttttaaaaagtcaaatttatcatttt 28599706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 37307663 - 37307711
Alignment:
Q  351 catcatttgtcaatgcaatattattatttttatcatcttaattaatgtt 399  Q
    |||||||| ||||||||||| | ||||||||||| ||||||| ||||||    
T  37307663 catcatttttcaatgcaatagttttatttttatcctcttaatcaatgtt 37307711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 284 - 379
Target Start/End: Complemental strand, 33633959 - 33633864
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattt 379  Q
    ||||||||||| |||| |||||||| |||||||||| |||||| ||| ||||||||| || |||||  ||||||| |||||||||||||| |||||    
T  33633959 aaaaatagtagatttgcaatggattcaacaatatttcaactttaaaagagttaaattcattattttttatcatttttcaatgcaatattactattt 33633864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 283 - 384
Target Start/End: Complemental strand, 4542471 - 4542370
Alignment:
Q  283 caaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttta 382  Q
    ||||||||||||||||  | |||||| |||||||||| |||||||||||||| ||||| |||||||| |||||| | | ||| ||||||| ||| |||||    
T  4542471 caaaaatagtaggtttccattggattcaacaatatttaaacttttaaaaagtcaaattcatcatttttcatcatcttttaatacaatatttttaatttta 4542372  T
Q  383 tc 384  Q
    ||    
T  4542371 tc 4542370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 34060890 - 34060786
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    |||||| |||| ||||  ||||| | || ||| ||||||||||||||||||||||||||||||| |||| ||| || ||||| ||||| ||||||| |||    
T  34060890 ggaaattaaaagtagtttgtttgcattgaattcaacaatattttaacttttaaaaagttaaattcatcacttttcaccatttttcaatacaatattttta 34060791  T
Q  377 ttttt 381  Q
    |||||    
T  34060790 ttttt 34060786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 51817403 - 51817323
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||||||||| |||||||||||||||||||||||| ||| || |||||  |||||| ||||| ||||||||||| |||||    
T  51817403 aacaatattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttttatttttatcctctta 51817323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 303 - 391
Target Start/End: Complemental strand, 18885 - 18797
Alignment:
Q  303 tggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||| ||||||||||||| ||||||||||||||||| |||| ||| || | |||  ||||||||||||  |||||||||| ||||||    
T  18885 tggattcaacaatattttaatttttaaaaagttaaattcatcacttttcaccgtttcccaatgcaatatttctatttttatcctcttaa 18797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 277 - 404
Target Start/End: Original strand, 11675298 - 11675423
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||| ||||| | ||||||| | | |||||| ||||||||||| || ||||||||||||||||  |||||||||  ||||| ||||| |||||||  ||    
T  11675298 ggaaaccaaaagtggtaggttagcattggattcaacaatattttgacatttaaaaagttaaattcgtcattttac--catttttcaatacaatatttcta 11675395  T
Q  377 tttttatcatcttaattaatgttttaag 404  Q
    ||||||||   |||| ||||||||||||    
T  11675396 tttttatccctttaaataatgttttaag 11675423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 304 - 372
Target Start/End: Original strand, 21324528 - 21324595
Alignment:
Q  304 ggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    ||||| |||||||||||||||||||||||||||||| ||||| ||| ||||||||  ||||||||||||    
T  21324528 ggattcaacaatattttaacttttaaaaagttaaatctatcacttttcatcattt-ccaatgcaatatt 21324595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 49976237 - 49976158
Alignment:
Q  305 gatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||||||||||||| ||||||||||||||||||| |||| ||| || |||| |||||| ||||| |  ||||||||||    
T  49976237 gatttaacaatattttgacttttaaaaagttaaattcatcacttttcaccattagtcaatacaataattctatttttatc 49976158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 4759941 - 4759867
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||| ||| || ||||| ||||||| |||||  ||||||||||    
T  4759941 aacaacattttgacttttaaaaagttaaatttatcacttttcaccatttttcaatgctatatttctatttttatc 4759867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 39974904 - 39974826
Alignment:
Q  303 tggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttt 381  Q
    |||||| |||| |||||||||||||||||||||||||| |||| ||  ||||||||   ||||||||||| ||||||||    
T  39974904 tggattcaacactattttaacttttaaaaagttaaattcatcacttctcatcattttctaatgcaatatttttattttt 39974826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 46317504 - 46317578
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||||||  |||||  |||||  ||||||||||    
T  46317504 aacaacattttgacttttaaaaagttaaatttatcatttttcatcattttccaatgttatatttctatttttatc 46317578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 372
Target Start/End: Complemental strand, 20227486 - 20227409
Alignment:
Q  295 gtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    ||||||| ||| || || || |||||||||||||| ||||||||||||||| ||| |||||||| ||||||| |||||    
T  20227486 gtttgtattggtttcaataacattttaacttttaagaagttaaatttatcacttttcatcatttttcaatgctatatt 20227409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 19026 - 18946
Alignment:
Q  303 tggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttat 383  Q
    |||||| ||||||||||||| ||||||||||||||||| |||| ||| || | |||  ||||||||||||  |||||||||    
T  19026 tggattcaacaatattttaatttttaaaaagttaaattcatcacttttcaccgtttcccaatgcaatatttctatttttat 18946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 34750369 - 34750313
Alignment:
Q  289 tagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||||||||||| |||||| ||||||||||||| || |||||||||||||| ||||    
T  34750369 tagtaggtttgtattggattcaacaatattttaatttataaaaagttaaattcatca 34750313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 35306356 - 35306424
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||||||||||||||||||||||||||| ||| ||||||||  |||||  |||||  ||||||||||    
T  35306356 attttaacttttaaaaagttaaatttatcacttttcatcattttccaatgttatatttctatttttatc 35306424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 36730244 - 36730170
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||| ||| || ||||| ||||| | |||||  ||||||||||    
T  36730244 aacaacattttgacttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttatatttttatc 36730170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 12051056 - 12051129
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttat 383  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||| ||||  |||| | |||||  |||||||||    
T  12051056 aacaacattttaatttttaaaaagttaaatttatcatttttcattattttacaatactatatttctatttttat 12051129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 8715592 - 8715520
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttta 382  Q
    ||||| ||||| |||||||||||||||||||||||| ||| || |||||  |||||| |||||  ||||||||    
T  8715592 aacaacattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttctattttta 8715520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 9067479 - 9067407
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttta 382  Q
    ||||| ||||| |||||||||||||||||||||||| ||| || |||||  |||||| |||||  ||||||||    
T  9067479 aacaacattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttctattttta 9067407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 44695762 - 44695714
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||| ||||||| |||||||||||||||||||||||||| || |||||    
T  44695762 aacaacattttaatttttaaaaagttaaatttatcatttttcaccattt 44695714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 8847543 - 8847508
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||||||||||||||||||||||||||||| ||||    
T  8847543 aacaatattttaacttttaaaaagttaaattaatca 8847508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 345
Target Start/End: Original strand, 37509129 - 37509164
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||||||||| ||||||||||||||||||||||||    
T  37509129 aacaatattttgacttttaaaaagttaaatttatca 37509164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 271272 - 271218
Alignment:
Q  295 gtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||||| |||||| |||||| |||||||||||||||||| ||||| || |||||    
T  271272 gtttgtattggattcaacaatgttttaacttttaaaaagtcaaattcattatttt 271218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 10854877 - 10854939
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    ||||| |||||||||||||||||||||||||||| | ||| || |||||  |||||| |||||    
T  10854877 aacaacattttaacttttaaaaagttaaatttattagttttcaccattttccaatgctatatt 10854939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 12905373 - 12905300
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||| ||||||||||||||||| || ||||| ||||||  |||||  ||||||||||    
T  12905373 aacaacattttgacttttaaaatgttaaatttatcatttttcaccattt-tcaatgttatatttctatttttatc 12905300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 391
Target Start/End: Complemental strand, 13647162 - 13647046
Alignment:
Q  278 gaaatcaaaaatagtaggtttgtaatggatttaacaatattttaactttta---aaaagttaaatttatcattttacatcatttgtcaatgcaatattat 374  Q
    |||| ||||| |||||||||| || || ||| |||||| |||||| |||||   |||||||||||| |||| ||| ||  |||| ||||| |||||||      
T  13647162 gaaaccaaaagtagtaggtttatattgaattcaacaatgttttaatttttagtaaaaagttaaattcatcacttttcactatttttcaatccaatatttc 13647063  T
Q  375 tatttttatcatcttaa 391  Q
    |||||||||| ||||||    
T  13647062 tatttttatcctcttaa 13647046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 32415587 - 32415661
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||| | ||| ||  |||| ||||||| |||||  ||||||||||    
T  32415587 aacaacattttgacttttaaaaagttaaatttatgacttttcacaatttttcaatgctatatttctatttttatc 32415661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 364
Target Start/End: Complemental strand, 29213482 - 29213397
Alignment:
Q  279 aaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaat 364  Q
    |||| |||||| ||| ||||| | || ||| | |||| |||||||||||||||||| |||| ||||||||| || ||||| |||||    
T  29213482 aaattaaaaatggtaagtttgcattgaattcagcaattttttaacttttaaaaagtcaaatctatcatttttcaccatttttcaat 29213397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 31647328 - 31647361
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||| ||||||||||||||||||||||||||||    
T  31647328 attttgacttttaaaaagttaaatttatcatttt 31647361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 41345993 - 41346026
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttat 343  Q
    ||||||||||||||||||||||| ||||||||||    
T  41345993 aacaatattttaacttttaaaaaattaaatttat 41346026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 372
Target Start/End: Complemental strand, 12060176 - 12060088
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    |||||||||| ||| | | || ||| |||||| |||||||||||||||| | |||| ||||| ||| ||||||||  |||| |||||||    
T  12060176 aaaaatagtaagttggcattgaattcaacaattttttaacttttaaaaactcaaatctatcacttttcatcattttccaatacaatatt 12060088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 29915660 - 29915592
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| |||||||||||||||||||||| |||||  | |||||  |||| | ||||| |||||||||||    
T  29915660 attttgacttttaaaaagttaaatttataattttttaccattttccaatactatatttttatttttatc 29915592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 29964813 - 29964745
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| |||||||||||||||||||||| |||||  | |||||  |||| | ||||| |||||||||||    
T  29964813 attttgacttttaaaaagttaaatttataattttttaccattttccaatactatatttttatttttatc 29964745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 33466037 - 33466001
Alignment:
Q  313 aatattttaacttttaaaaagttaaatttatcatttt 349  Q
    |||||||||||||||||||||||||||  ||||||||    
T  33466037 aatattttaacttttaaaaagttaaatgcatcatttt 33466001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 39436495 - 39436563
Alignment:
Q  322 acttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    |||||||||||||||||||  | ||||| || ||||| ||||| |||||||  |||||||||| |||||    
T  39436495 acttttaaaaagttaaattctttatttttcaccatttttcaatacaatatttctatttttatcctctta 39436563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 44019198 - 44019162
Alignment:
Q  313 aatattttaacttttaaaaagttaaatttatcatttt 349  Q
    |||||||||||||||||||||||||||| | ||||||    
T  44019198 aatattttaacttttaaaaagttaaattcaccatttt 44019162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 52570800 - 52570848
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcattt 358  Q
    ||||||||||| ||||||||||||||| |||||||| ||| || |||||    
T  52570800 aacaatattttgacttttaaaaagttatatttatcacttttcaccattt 52570848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 4940861 - 4940754
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||| ||||||||| | ||||||| ||| |||||||||||||| |||||||||||||||||||||||| |||  | |||||  |||||| |||||  ||    
T  4940861 ggaaaccaaaaatagcatgtttgtattggttttaacaatattttgacttttaaaaagttaaatttatcacttttaaccattttccaatgctatatttcta 4940762  T
Q  377 tttttatc 384  Q
    ||||||||    
T  4940761 tttttatc 4940754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 26469667 - 26469596
Alignment:
Q  313 aatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||||| |||||||||||||||||||||||||||| ||| |||| ||||||| ||||| |||||||||||    
T  26469667 aatattttgacttttaaaaagttaaatttatcatttttcattatttttcaatgctatatttttatttttatc 26469596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 42607412 - 42607338
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||||||| || ||||| ||||||| ||||| |||||||||||    
T  42607412 aacaacattttgacttttaaaaagttaaatttatcatttttcaccatttttcaatgctatatttttatttttatc 42607338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 316 - 391
Target Start/End: Complemental strand, 7190557 - 7190482
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||||||||||||||||||||||||||| ||| |||||||| | ||||| |||||  |||||||||| ||||||    
T  7190557 attttaacttttaaaaagttaaatttatcacttttcatcatttttgaatgctatatttctatttttatcctcttaa 7190482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 50154491 - 50154565
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| |||||||||||||||| |||||||||||||||||  ||||||| ||||||| |||||  ||||||||||    
T  50154491 aacaacattttaacttttaaaaggttaaatttatcattttttatcatttttcaatgctatatttatatttttatc 50154565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 27210750 - 27210831
Alignment:
Q  317 ttttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgt 398  Q
    |||||||||||||||||||||||| |||||||| || ||||| ||| | ||||| | ||||||||||| ||||||| |||||    
T  27210750 ttttaacttttaaaaagttaaattgatcatttttcaccatttttcattacaatagttttatttttatcctcttaatcaatgt 27210831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 391
Target Start/End: Original strand, 40920170 - 40920286
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttat--cattttacatcatttgtcaatgcaatattat 374  Q
    ||||| ||||| |||| | |||| | |||||| ||||||||||||||||||||||||||||||| ||  || ||| || || || |||||||||||||      
T  40920170 ggaaaccaaaagtagtggatttgcattggattcaacaatattttaacttttaaaaagttaaattaatcacacttttcaccacttctcaatgcaatatttc 40920269  T
Q  375 tatttttatcatcttaa 391  Q
    |||||||||| ||||||    
T  40920270 tatttttatcctcttaa 40920286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 41147599 - 41147492
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    |||| |||||| ||| | ||||| | ||| || ||||||||||| ||||||||||||||||||| ||||||||  | ||||| ||||||| |||||  ||    
T  41147599 ggaagtcaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagttaaattaatcattttttaccatttttcaatgctatatttcta 41147500  T
Q  377 tttttatc 384  Q
    ||||||||    
T  41147499 tttttatc 41147492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 384
Target Start/End: Original strand, 43433766 - 43433867
Alignment:
Q  283 caaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattattttta 382  Q
    ||||| ||||| ||||||| ||| || ||||| ||||||| |||||||||||||||||||||| ||| || ||||| | ||| | |||||  ||||||||    
T  43433766 caaaagtagtatgtttgtattggtttcaacaacattttaatttttaaaaagttaaatttatcacttttcaccattttttaatactatatttctattttta 43433865  T
Q  383 tc 384  Q
    ||    
T  43433866 tc 43433867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 28277570 - 28277490
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||| ||||||| |||||||||||||||||||||| |||  ||||||| ||||||  |||||  |||||||||| |||||    
T  28277570 aacaacattttaatttttaaaaagttaaatttatcactttttatcatttttcaatgttatatttctatttttatcctctta 28277490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 932245 - 932171
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| ||||||||||| |||||||||| ||||| ||||||||  |||||| |||||  ||||||||||    
T  932245 aacaacattttgacttttaaaaaattaaatttataatttttcatcattttccaatgctatatttctatttttatc 932171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 27209809 - 27209735
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| |||||||||||||||||||||||||||||| ||| || |||||  |||||  |||||  ||||||||||    
T  27209809 aacaacattttaacttttaaaaagttaaatttatcaattttcaccattttccaatgttatatttctatttttatc 27209735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 33929984 - 33930058
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||| ||| ||  |||| ||||||| |||||  ||||||||||    
T  33929984 aacaacattttgacttttaaaaagttaaatttatcagttttcactatttttcaatgctatatttatatttttatc 33930058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 40845269 - 40845343
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||||||| | |||||||||||||||||||||| ||| || ||||| ||||| | |||||  ||||||||||    
T  40845269 aacaatattttgatttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttctatttttatc 40845343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 41898947 - 41898885
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatatt 372  Q
    ||||||||||||||||||||||||||||||| |||| |||  | ||||| ||||| |||||||    
T  41898947 aacaatattttaacttttaaaaagttaaattcatcactttttaccatttttcaatacaatatt 41898885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 44286887 - 44286929
Alignment:
Q  307 tttaacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  44286887 tttaataatattttaatttttaaaaagttaaatttatcatttt 44286929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 47655459 - 47655385
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||| ||| || ||||| ||||||| ||| |  ||||||||||    
T  47655459 aacaacattttgacttttaaaaagttaaatttatcaattttcaccatttttcaatgctatacttctatttttatc 47655385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 22346325 - 22346252
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttat 383  Q
    ||||||||||| ||||||||||| |||||||||||| ||| || ||||| ||||| | |||||  |||||||||    
T  22346325 aacaatattttgacttttaaaaaattaaatttatcacttttcaccatttttcaatactatatttctatttttat 22346252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 49508820 - 49508748
Alignment:
Q  311 acaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||||||| |||||||||||||||||||||||| ||| || |||||  |||||| |||||  ||||||||||    
T  49508820 acaatattttgacttttaaaaagttaaatttatcacttt-caccattttccaatgctatatttctatttttatc 49508748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 391
Target Start/End: Complemental strand, 49559775 - 49559694
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||||||||||||||||| ||||||||||||  || || ||  |||| ||| | |||||||  |||||||||||||||||    
T  49559775 aacaatattttaacttttaagaagttaaatttactatctttcaatatttttcagtacaatatttctatttttatcatcttaa 49559694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 2125789 - 2125721
Alignment:
Q  316 attttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| |||||||||||||||||||||||| ||| ||  |||| ||||||| |||||  ||||||||||    
T  2125789 attttgacttttaaaaagttaaatttatcacttttcacaatttttcaatgctatatttctatttttatc 2125721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 21268408 - 21268329
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaat 364  Q
    ||||||||||  |||||| || ||| |||||| ||||||||||| ||||||||||| ||||||||| || ||||| |||||    
T  21268408 aaaaatagtaaatttgtattgaattcaacaattttttaactttt-aaaagttaaatctatcatttttcaccatttctcaat 21268329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 6170639 - 6170600
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  6170639 aacaacattttgacttttaaaaagttaaatttatcatttt 6170600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 17402961 - 17403040
Alignment:
Q  305 gatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||| ||||||||||| ||||||||||||||||||| |||| |||  | ||||| | ||| ||||||| | |||||||||    
T  17402961 gattcaacaatattttgacttttaaaaagttaaattcatcactttttaccattttttaatacaatattttaatttttatc 17403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 46296273 - 46296234
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  46296273 aacaatattttgacttttaaaaagttaaatttattatttt 46296234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 50295521 - 50295486
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||||||||| ||||||||||||||||||||||||    
T  50295521 aacaatattttgacttttaaaaagttaaatttatca 50295486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 384
Target Start/End: Original strand, 52396464 - 52396534
Alignment:
Q  313 aatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    |||||||| |||||||||||||||||||||||| |||  ||||||| ||||| | |||||  ||||||||||    
T  52396464 aatattttgacttttaaaaagttaaatttatcacttt-tatcatttttcaatactatatttctatttttatc 52396534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 11385999 - 11386073
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| |||||||||||||||||||||||| |||  | |||||  |||||| |||||  ||||||||||    
T  11385999 aacaacattttgacttttaaaaagttaaatttatcaatttttaccattttccaatgctatatttctatttttatc 11386073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 11803489 - 11803411
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatca 355  Q
    ||||| |||||||| ||  |||||| ||||  ||||||| ||||||||||||||||||| |||| | |||||| |||||    
T  11803489 ggaaaccaaaaataatatttttgtattggaaataacaatgttttaacttttaaaaagttgaattcaccatttttcatca 11803411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 391
Target Start/End: Original strand, 14331822 - 14331936
Alignment:
Q  277 ggaaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattatta 376  Q
    ||||| |||||||||||  |||  | || ||| |||||| |||| |||||||||||||||||||  ||||||| || |||||  |||| |||| ||  ||    
T  14331822 ggaaaccaaaaatagtatatttacattgaattcaacaatgttttgacttttaaaaagttaaattcttcatttttcaccatttcccaatacaatgtttcta 14331921  T
Q  377 tttttatcatcttaa 391  Q
    |||||||||| ||||    
T  14331922 tttttatcattttaa 14331936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 391
Target Start/End: Original strand, 16691303 - 16691393
Alignment:
Q  301 aatggatttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||| ||| |||||| |||| |||||||||||||||||||  |||||||  | |||||  |||| |||| ||  |||||||||||||||||    
T  16691303 aatgaattcaacaatgttttgacttttaaaaagttaaattcttcattttttaccatttcccaatacaatgtttctatttttatcatcttaa 16691393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 31975502 - 31975560
Alignment:
Q  307 tttaacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatg 365  Q
    |||||||||||||| | ||||||||||||||||||| || |||  ||||||| ||||||    
T  31975502 tttaacaatattttgatttttaaaaagttaaatttaccactttttatcatttttcaatg 31975560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 34874585 - 34874659
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||| ||||| ||||||||||| |||||||||||| ||| || |||||  |||||| |||||  ||||||||||    
T  34874585 aacaacattttgacttttaaaaaattaaatttatcacttttcaccattttccaatgctatatttctatttttatc 34874659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 48938654 - 48938755
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaattaatgttttaagagcac 409  Q
    |||||| |||| ||||||||||||| |||||| ||| ||| || |||||   ||| |||||||  ||||||||||||||||| |||||  | ||||||||    
T  48938654 aacaatgttttgacttttaaaaagt-aaatttttcacttttcaccattttctaatacaatatttctatttttatcatcttaactaatgcctaaagagcac 48938752  T
Q  410 tct 412  Q
    |||    
T  48938753 tct 48938755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 30222638 - 30222687
Alignment:
Q  310 aacaatattttaactttt-aaaaagttaaatttatcattttacatcattt 358  Q
    |||||||||||||||||| ||||| |||||||||||| ||| ||||||||    
T  30222638 aacaatattttaactttttaaaaaattaaatttatcactttccatcattt 30222687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 49901951 - 49902024
Alignment:
Q  317 ttttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatctta 390  Q
    ||||||| ||||||||||||||||||||| ||| || |||||  |||| | |||||  |||||||||| |||||    
T  49901951 ttttaacgtttaaaaagttaaatttatcacttttcaccattttccaatactatatttctatttttatcctctta 49902024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 8414918 - 8414870
Alignment:
Q  297 ttgtaatggatttaacaatattttaacttttaaaaagttaaatttatca 345  Q
    ||||| |||||| ||||||||||||||||||||||| | ||||| ||||    
T  8414918 ttgtattggattgaacaatattttaacttttaaaaaatcaaattcatca 8414870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 10161080 - 10161024
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatt 340  Q
    |||||||||| ||||| | |  ||| ||| |||||||||||||||||||||||||||    
T  10161080 aaaaatagtaagtttgcattaaattcaacgatattttaacttttaaaaagttaaatt 10161024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 332
Target Start/End: Original strand, 35223569 - 35223597
Alignment:
Q  304 ggatttaacaatattttaacttttaaaaa 332  Q
    |||||||||||||||||||||||||||||    
T  35223569 ggatttaacaatattttaacttttaaaaa 35223597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 47466373 - 47466417
Alignment:
Q  305 gatttaacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    |||| ||||||||||||| ||||||||||||||| | ||||||||    
T  47466373 gattgaacaatattttaatttttaaaaagttaaactcatcatttt 47466417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 11164 - 11099
Alignment:
Q  284 aaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaagttaaatttatcatttt 349  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  11164 aaaaatagtatgtttgcaatgaatttaacaatattttaacttttaaaaagttaaattcatcttttt 11099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 16862 - 16789
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||||||| ||||||||||||||| |||||||||||| ||  |||| ||||||| |||||  ||||||||||    
T  16862 aacaatattttgacttttaaaaagttacatttatcatttttcactattt-tcaatgctatatttctatttttatc 16789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 27030 - 26957
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||||||| ||||||||||||||| |||||||||||| ||  |||| ||||||| |||||  ||||||||||    
T  27030 aacaatattttgacttttaaaaagttacatttatcatttttcactattt-tcaatgctatatttctatttttatc 26957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 37196 - 37123
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatc 384  Q
    ||||||||||| ||||||||||||||| |||||||||||| ||  |||| ||||||| |||||  ||||||||||    
T  37196 aacaatattttgacttttaaaaagttacatttatcatttttcactattt-tcaatgctatatttctatttttatc 37123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 392223 - 392162
Alignment:
Q  310 aacaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatat 371  Q
    ||||| ||||| |||||||||||||||||||||||| |||  | ||||| ||||||| ||||    
T  392223 aacaacattttgacttttaaaaagttaaatttatcactttttaccatttttcaatgctatat 392162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 8854 - 8774
Alignment:
Q  279 aaatcaaaaatagtaggtttgtaatggatttaacaatattttaacttttaaaaa-gttaaatttatcattttacatcattt 358  Q
    ||||||||| |||||| ||||||   |||| ||| |||| || ||||||||||| |||||||| |||||||| ||||||||    
T  8854 aaatcaaaagtagtagatttgtataagattcaacgatatattgacttttaaaaaagttaaattcatcatttttcatcattt 8774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 391
Target Start/End: Original strand, 97796 - 97875
Alignment:
Q  311 acaatattttaacttttaaaaagttaaatttatcattttacatcatttgtcaatgcaatattattatttttatcatcttaa 391  Q
    |||||||||||||||| | |||||||||||| ||| ||| || ||||| | |||  ||| ||| |||||||||||||||||    
T  97796 acaatattttaacttt-agaaagttaaatttttcacttttcaccattttttaatataatgttactatttttatcatcttaa 97875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University