View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9048_low_23 (Length: 250)
Name: NF9048_low_23
Description: NF9048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9048_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2532025 - 2532246
Alignment:
| Q |
1 |
aaaaagagagtcaaacataatttgttatgaaataggagagaattatttattattannnnnnnncttttataaataaagtaaaactaaacatcaatcttaa |
100 |
Q |
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| T |
2532025 |
aaaaagagagtcaaacataatttgttatgaaataggagagaattttttatt--------------tttttaaataaagtagaactaaacattaatctaaa |
2532110 |
T |
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| Q |
101 |
taaacgataaaaattatttt-ttaccaaagattattacgctcaaaatatttaaatattgcttaaatttaatttgagtttcgttgtttttaataaacaggt |
199 |
Q |
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| T |
2532111 |
taaacgataaaaattatttttttaccaaagattattacgctcaaaatatttaaatattgcttaaatttaatttgagtttcgttgtttttaataaacaggt |
2532210 |
T |
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| Q |
200 |
gatgattgtattgccgtcaatggtggttccactttt |
235 |
Q |
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| T |
2532211 |
gatgattgtattgcagtcaatggtggttctactttt |
2532246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 99 - 235
Target Start/End: Original strand, 2541702 - 2541838
Alignment:
| Q |
99 |
aataaacgataaaaattattttttaccaaagattattacgctcaaaatatttaaatattgcttaaatttaatttgagtttcgttgtttttaataaacagg |
198 |
Q |
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| T |
2541702 |
aataaacgataaaaattatattttagaaaagattattacgcttatattttttgaattttgtgtaaatttcattttagtttcggtgtttttaataaacagg |
2541801 |
T |
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| Q |
199 |
tgatgattgtattgccgtcaatggtggttccactttt |
235 |
Q |
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| T |
2541802 |
tgatgattgtattgccatcaatggtggctcctctttt |
2541838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 2541629 - 2541705
Alignment:
| Q |
71 |
aaataaagtaaaactaaacatcaatcttaataaacgataaaaattattttttaccaaagattattacgctcaaaata |
147 |
Q |
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| T |
2541629 |
aaataaaatagaactaaacatcaatctaaataaaggatagaaattattatttagcaaagattattacactctaaata |
2541705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2541570 - 2541617
Alignment:
| Q |
1 |
aaaaagagagtcaaacataatttgttatgaaataggagagaattattt |
48 |
Q |
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| T |
2541570 |
aaaaagagagtcaaacataatttgttatgaaaaaggaaagaaatattt |
2541617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 2525077 - 2525115
Alignment:
| Q |
190 |
ataaacaggtgatgattgtattgccgtcaatggtggttc |
228 |
Q |
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| T |
2525077 |
ataaataggtgatgattgtattgccctcaatggtggttc |
2525115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 219
Target Start/End: Complemental strand, 11658535 - 11658506
Alignment:
| Q |
190 |
ataaacaggtgatgattgtattgccgtcaa |
219 |
Q |
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| T |
11658535 |
ataaacaggtgatgattgtattgccgtcaa |
11658506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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