View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9048_low_24 (Length: 243)
Name: NF9048_low_24
Description: NF9048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9048_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 13389974 - 13389764
Alignment:
| Q |
16 |
ctgtgttgatttgaatttaagtttgtagctttttagatgtcctattttgatcgttgaacttactttgttgtcgacttgtttaaaggttgtgtaagttagt |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13389974 |
ctgtgttgatttgaatttcagtttgtagctttttagatgtcctattttgatcgttgaacttactttgttgtcgacttgtttaaaggttgtgtaagtt-gt |
13389876 |
T |
|
| Q |
116 |
tggttctatttgatcatgaatgttttgattaaacactatttatgtttctcagattatttttgaacttatttctattgttaagttaacctgcaagtttttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13389875 |
tggttctatttgatcatgaatgttttgattaaacgctatttatgtttctcagattatttttgaacttatttccattgttaagttaacctgcaagtttttg |
13389776 |
T |
|
| Q |
216 |
ttgtgttctgtt |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13389775 |
ttgtgttctgtt |
13389764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 39638087 - 39638000
Alignment:
| Q |
19 |
tgttgatttgaatttaagtttgtagctttttagatgtcctattttgatcgttgaacttactttgttgtcgacttgtttaaaggttgtgtaa |
109 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||||||||||||||||| || |||| || ||| ||||||||||||||||||| |
|
|
| T |
39638087 |
tgttgatttgaatttcagtttgtggttttttagatgtcctattttgatcgttaaa---acttcgtaatcggtttgtttaaaggttgtgtaa |
39638000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University