View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9048_low_5 (Length: 462)
Name: NF9048_low_5
Description: NF9048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9048_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 446
Target Start/End: Complemental strand, 3881945 - 3881503
Alignment:
| Q |
11 |
aacctgtggaccaaggaatgagtaactcattaaacaaaataatgttaggagttttgcccactttttcctctctcttttcagtccccttctatctccattt |
110 |
Q |
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| T |
3881945 |
aacctgtggaccaaggaatgagtaactcattaaacaaaataatgttaggagttttgcccactttttcctctctcttttcagtccccttctatctccattt |
3881846 |
T |
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| Q |
111 |
tccagccaatttctgtgtcttcattgttgcagaa-caggaaacgatgaaaaatgaaataaatgnnnnnnnnn--aaatccaaaaacattaataatataat |
207 |
Q |
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| T |
3881845 |
tccagccaatttctgcgtcttcattgttgcagaagcaggaaacgatgaaaaatgaaataaatgtttttttttttaaatccaaaaacattaataatataag |
3881746 |
T |
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| Q |
208 |
tatttaaacacgagatagacacaaataagctcttctgaacaacttctgtgtgtatggtagtataacatcacaacttcgctaggtttatcaaactaaataa |
307 |
Q |
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| T |
3881745 |
tatttaaacacgagatagacacaaataagctcttctgaacaacttctgtgtgtatggtagtataacatcacaacttcgctaggtttatcaaactaaataa |
3881646 |
T |
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| Q |
308 |
ccaccacttctggagatttgttttgaggatgggagga--ggttctccgctactattatacaatctgtaatatgctagacagt-aaaaacatgtgaactaa |
404 |
Q |
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| T |
3881645 |
ccaccacttctggagatttgttttgaggatgggaggagcggttcttcactactattatactatttgtaatttgcaagacagtaaaaaatatgtaaactaa |
3881546 |
T |
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| Q |
405 |
aagatgatg-cttttaccttaagttgtttacaagagtcaaaaa |
446 |
Q |
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| T |
3881545 |
aatataatgttttttacctttagttgtttacaagagtcaaaaa |
3881503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 446
Target Start/End: Complemental strand, 3867896 - 3867744
Alignment:
| Q |
298 |
aactaaataaccaccacttctggagatttgttttgaggatgggagga--ggttctccgctactattatacaatctgtaatatgctagacagt-aaaaaca |
394 |
Q |
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|||||||||||| |||||| | |||||||||||||||||||||||| |||||| | |||||||||||| || |||||| ||| ||||||| ||||| | |
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| T |
3867896 |
aactaaataaccctcacttccgtagatttgttttgaggatgggaggagcggttcttcactactattatactatttgtaatttgcaagacagtaaaaaata |
3867797 |
T |
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| Q |
395 |
tgtgaactaaaagatgatg-cttttaccttaagttgtttacaagagtcaaaaa |
446 |
Q |
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| T |
3867796 |
tgtaaactaaaatataatgttttttacctttagttgtttacaagaatcaaaaa |
3867744 |
T |
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