View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9048_low_8 (Length: 438)
Name: NF9048_low_8
Description: NF9048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9048_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 6967789 - 6967385
Alignment:
| Q |
19 |
aatctaacctcaacaaaagggtaacaaaagttggctaatttctctgagaatttctcaatgagtgcatgaacttgatgaggacaataactttgaatcatag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6967789 |
aatctaacctcaacaaaagggtaacaaaagttggctaatttctctgagaatttctcaatgagtgcatgaacttgatgaggacaataactttgaatcatag |
6967690 |
T |
|
| Q |
119 |
cccaaataaacattaggcttgcaacctttgaacctatcagaccccaaatttcaaacatgnnnnnnnnnnctcttctactttgtactactttgtttctttg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6967689 |
cccaaataaacattaggcttgcaacctttgaacctatcagaccccaaatttcaaacatgttttttttttctcttctactttgtactactttgtttctttg |
6967590 |
T |
|
| Q |
219 |
tttaaactctattggtcttgtgtatacatataggctaggaacatttgtttctcatgtgtttgttacgtataaggacaaaatatgattatgagatgttgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6967589 |
tttaaactctattggtcttgtgtatacatataggctaggaacatttgtttctcatgtgtttgttacgtataaggacaaaatatgatcatgagatgttgat |
6967490 |
T |
|
| Q |
319 |
agttgatcttgattcttgaatcagaattgcatgtctttttcatagtacactgtttcagaaacaggttggacttttgaccacatgcaaaagacaacatagc |
418 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6967489 |
agttgatcttgattcttgaatcagacttgcatgtctttttcatagtacactgttccagaaacaggttggacttttgaccacatgcaaaagacaacatagc |
6967390 |
T |
|
| Q |
419 |
cacag |
423 |
Q |
| |
|
||||| |
|
|
| T |
6967389 |
cacag |
6967385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University