View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9048_low_9 (Length: 374)

Name: NF9048_low_9
Description: NF9048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9048_low_9
NF9048_low_9
[»] chr5 (3 HSPs)
chr5 (1-374)||(3261562-3261940)
chr5 (139-205)||(747687-747753)
chr5 (289-356)||(747624-747691)
[»] chr4 (3 HSPs)
chr4 (174-296)||(41805179-41805302)
chr4 (158-270)||(39600002-39600114)
chr4 (146-226)||(11960084-11960164)
[»] chr1 (5 HSPs)
chr1 (146-223)||(20291139-20291216)
chr1 (141-226)||(52282260-52282345)
chr1 (158-226)||(47527934-47528002)
chr1 (174-296)||(42330977-42331100)
chr1 (175-211)||(20290509-20290545)
[»] chr2 (1 HSPs)
chr2 (149-226)||(26179622-26179699)
[»] chr7 (1 HSPs)
chr7 (131-231)||(24555970-24556070)
[»] chr6 (1 HSPs)
chr6 (142-226)||(9880568-9880652)
[»] chr3 (1 HSPs)
chr3 (140-227)||(47955218-47955305)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 3261562 - 3261940
Alignment:
Q  1 ccttctattcctatcttaacacccaact-----tgatctaattaataaggaattagtttatacaatctcatttataaatagtatctaaatttttaaaatt 95  Q
    ||||||||||||||||||||||||||||     ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  3261562 ccttctattcctatcttaacacccaactcaagatgatctaattaataaggaattagttcatacaatctcgtttataaatagtatctaaatttttaaaatt 3261661  T
Q  96 tgtcccgacacgttggttagtgtgagactcaactaaaaatatattagggaaaattacactagcctcccttaaagttcttttaaataacacaaactccccc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3261662 tgtcccgacacgttggttagtgtgagactcaactaaaaatatattagggaaaattacactagcctcccttgaagttcttttaaataacacaaactccccc 3261761  T
Q  196 tctagttttataatagacaaaaacctcccttcaattctcttaatatagatagcacctccctttggaacttaacacccacttaacaccgtttgcttttaat 295  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3261762 tctaattttataatagacaaaaacctcccttaaattctcttaatatagatagcacatccctttggaacttaacacccacttaacaccgtttgcttttaat 3261861  T
Q  296 taagcgatggcctctgtgaatctcaagccaacccatttcttcggttagaggatttccttccctttcaatgcccttcaat 374  Q
    | |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3261862 tcagcgatggcctctgtgaatctcaaaccaacccatttcttcagttagaggatttccttccctttcaatgcccttcaat 3261940  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 747753 - 747687
Alignment:
Q  139 ttagggaaaattacactagcctcccttaaagttcttttaaataacacaaactccccctctagtttta 205  Q
    |||||| ||||||||||  | |||||| ||||||||||||||| ||||||| |||||||||||||||    
T  747753 ttaggggaaattacactgacttcccttgaagttcttttaaatagcacaaacaccccctctagtttta 747687  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 747691 - 747624
Alignment:
Q  289 ttttaattaagcgatggcctctgtgaatctcaagccaacccatttcttcggttagaggatttccttcc 356  Q
    |||||||| || ||||  ||||||||||||||| ||||||| ||||||  ||||||||||||||||||    
T  747691 ttttaattcagtgatgatctctgtgaatctcaaaccaacccctttctttagttagaggatttccttcc 747624  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 296
Target Start/End: Original strand, 41805179 - 41805302
Alignment:
Q  174 tttaaataacacaaactccccctctagttttataatagacaaaaacctcccttcaattctcttaatatagata-gcacctccctttggaacttaacaccc 272  Q
    |||||||||||||||| || ||||||||||||||||||||| ||||||||| | |  ||| |||| ||| | |  |||||||||||||||||||||| |     
T  41805179 tttaaataacacaaacacctcctctagttttataatagacataaacctcccctaagatcttttaaaatatacattcacctccctttggaacttaacagca 41805278  T
Q  273 acttaacaccgtttgcttttaatt 296  Q
    ||||||||||||||| ||||||||    
T  41805279 acttaacaccgtttgtttttaatt 41805302  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 39600114 - 39600002
Alignment:
Q  158 cctcccttaaagttcttttaaataacacaaactccccctctagttttataatagacaaaaacctcccttcaattctcttaatatagatagcacctccctt 257  Q
    |||||| |||||||  ||||||| |||||||| |||||||| |||||||| |||||| ||| || || | |||||| |||| |||||||||||||||||     
T  39600114 cctcccataaagtttctttaaatgacacaaacaccccctctcgttttatattagacacaaatcttccctaaattcttttaaaatagatagcacctccctc 39600015  T
Q  258 tggaacttaacac 270  Q
    ||  |||||||||    
T  39600014 tgagacttaacac 39600002  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 11960084 - 11960164
Alignment:
Q  146 aaattacactagcctcccttaaagttcttttaaataacacaaactccccctctagttttataatagacaaaaacctccctt 226  Q
    |||||||| || |||||||| | |||   ||||||| ||||||| ||||||||||||||| | || ||| |||||||||||    
T  11960084 aaattacattaacctcccttgaggtttagttaaatagcacaaacaccccctctagttttaaactaaacacaaacctccctt 11960164  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 20291139 - 20291216
Alignment:
Q  146 aaattacactagcctcccttaaagttcttttaaataacacaaactccccctctagttttataatagacaaaaacctcc 223  Q
    |||| |||||| |||||| | | ||| | ||||||||||||||| ||||||||||||||||||||||||  |||||||    
T  20291139 aaataacactaacctcccctgaggttttcttaaataacacaaacaccccctctagttttataatagacattaacctcc 20291216  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 52282260 - 52282345
Alignment:
Q  141 agggaaaattacactagcctcccttaaagttcttttaaataacacaaactccccctctagttttataatagacaaaaacctccctt 226  Q
    |||||||||||||||| |||||| | | |||  || ||| |||||||||  || ||||||||||||||||||||  ||||||||||    
T  52282260 agggaaaattacactaacctcccctgaggtttgttcaaacaacacaaacatcctctctagttttataatagacattaacctccctt 52282345  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 47528002 - 47527934
Alignment:
Q  158 cctcccttaaagttcttttaaataacacaaactccccctctagttttataatagacaaaaacctccctt 226  Q
    |||||| | |||||||||||||| ||||  || ||||||||| ||||||||||||||  ||||||||||    
T  47528002 cctcccctgaagttcttttaaatgacactgacaccccctctaattttataatagacattaacctccctt 47527934  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 296
Target Start/End: Original strand, 42330977 - 42331100
Alignment:
Q  174 tttaaataacacaaactccccctctagttttataatagacaaaaacctcccttcaattctcttaatatagat-agcacctccctttggaacttaacaccc 272  Q
    |||||| ||||||||| |||  | ||||||||||||||||| ||||||| | | |  ||| |||| |||||| | ||||||||||||  |||||||        
T  42330977 tttaaacaacacaaacaccctttttagttttataatagacataaacctctcctaagatcttttaaaatagataaacacctccctttgtgacttaacggaa 42331076  T
Q  273 acttaacaccgtttgcttttaatt 296  Q
    ||||||||||||||| ||||||||    
T  42331077 acttaacaccgtttgtttttaatt 42331100  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 20290509 - 20290545
Alignment:
Q  175 ttaaataacacaaactccccctctagttttataatag 211  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  20290509 ttaaataacacaaacaccctctctagttttataatag 20290545  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 26179699 - 26179622
Alignment:
Q  149 ttacactagcctcccttaaagttcttttaaataacacaaactccccctctagttttataatagacaaaaacctccctt 226  Q
    |||||||  |||||||| | ||| | ||||||||||||||| ||||||||||||||| | || ||| |||||||||||    
T  26179699 ttacactcacctcccttgaggttttcttaaataacacaaacaccccctctagttttaaactaaacacaaacctccctt 26179622  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 24556070 - 24555970
Alignment:
Q  131 aaaatatattagggaaaattacactagcctcccttaaagttcttttaaataacacaaactccccctctagttttataatagacaaaaacctcccttcaat 230  Q
    |||||||  ||||| ||||||||||| |||||| | | |||  || |||  |||||||| ||||||||||||| ||||||||||  |||||||||| |||    
T  24556070 aaaatattctaggggaaattacactaacctcccctgaggtttgttcaaacgacacaaacaccccctctagtttaataatagacattaacctcccttaaat 24555971  T
Q  231 t 231  Q
    |    
T  24555970 t 24555970  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 9880568 - 9880652
Alignment:
Q  142 gggaaaattacactagcctcccttaaagttcttttaaataacacaaactccccctctagttttataatagacaaaaacctccctt 226  Q
    ||||||||||||||  |||||||| |  ||  ||||||||||| | || ||||||||||||||| ||||||||  ||||||||||    
T  9880568 gggaaaattacactcacctcccttgagttttctttaaataacaaagacaccccctctagttttaaaatagacaccaacctccctt 9880652  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 47955218 - 47955305
Alignment:
Q  140 tagggaaaattacactagcctcccttaaagttcttttaaataacacaaactccccctctagttttataatagacaaaaacctcccttc 227  Q
    ||||| ||||||||||  |||||||| ||||| | ||||||| ||| ||| ||||||||||||||  |||| |||  |||||||||||    
T  47955218 tagggtaaattacactcacctcccttgaagttttcttaaatagcactaacaccccctctagttttgaaataaacattaacctcccttc 47955305  T

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