View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9049_high_1 (Length: 475)
Name: NF9049_high_1
Description: NF9049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9049_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 211 - 458
Target Start/End: Original strand, 16891962 - 16892209
Alignment:
| Q |
211 |
tttatctgtgtcaagtaacttttattcaagaatgaagaattagatacaaaaaacaatacaaagaatgcacactgattagttaacttgcagatcaagttac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16891962 |
tttatctgtgtcaagtaacttttattcaagaatgaagaattagatacaaaaaacaatacaaagaatgcacactgattagttaacttgcagatcaagttac |
16892061 |
T |
|
| Q |
311 |
ctcacaaaactgtcaacaagcagttagttagacggttatacacaattagttagagcttagacagttaaacactatcagttagagcaatttataattgatt |
410 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16892062 |
ctcccaaaactgtcaacaagcagttagttagacggttatacacaattagttagagcttagacagttaaacactatcagttagagcaatttatatttgatt |
16892161 |
T |
|
| Q |
411 |
ttcgctcttgtaattggtagcttagagatagtaacatagagcatttgt |
458 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16892162 |
ttcactcttgtaattggtagcttagagatagtaacatagagcatttgt |
16892209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 16891659 - 16891874
Alignment:
| Q |
11 |
ataatactaaccagcatgtgagatgtgcgaactcaatcatgttatcatgtactataaagggtccatgcaaatttgagggggactacaagagatagtaaaa |
110 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16891659 |
ataatactaaccagcatgtga--tgtgtgaactcaatcatgttatcatgtactataaagggtccatgcaaatttgagggggactacaagagatagtaaaa |
16891756 |
T |
|
| Q |
111 |
gttagtaacatgtttgttag-------------attagtttgaagttaattggtttaagtccaaaatgatcaagttttggaagagtcaaaagaattacat |
197 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16891757 |
gttagtaacatgtttgttagattagtttgttccattagtttgaagttaattggtttaagtccaaaatgatcaagttttggaagagtcaaaagaattacat |
16891856 |
T |
|
| Q |
198 |
ttgatggaatgtgtttat |
215 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
16891857 |
ttgatggaatgtgtttat |
16891874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University