View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9049_low_1 (Length: 1327)

Name: NF9049_low_1
Description: NF9049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9049_low_1
NF9049_low_1
[»] chr5 (3 HSPs)
chr5 (20-1311)||(36222879-36224168)
chr5 (1081-1303)||(36226933-36227157)
chr5 (817-952)||(36227185-36227322)
[»] chr3 (8 HSPs)
chr3 (30-413)||(39426978-39427375)
chr3 (601-757)||(39426636-39426791)
chr3 (400-559)||(39426810-39426967)
chr3 (624-807)||(39425909-39426101)
chr3 (411-521)||(39426150-39426258)
chr3 (297-352)||(39426340-39426395)
chr3 (361-413)||(39426296-39426348)
chr3 (303-357)||(39426300-39426354)
[»] chr2 (10 HSPs)
chr2 (28-290)||(8580769-8581042)
chr2 (485-762)||(9300646-9300899)
chr2 (454-559)||(10346623-10346729)
chr2 (484-762)||(9287323-9287576)
chr2 (343-514)||(8581060-8581234)
chr2 (462-559)||(10351093-10351192)
chr2 (606-752)||(9271464-9271599)
chr2 (462-548)||(10334631-10334715)
chr2 (485-548)||(9271648-9271711)
chr2 (454-529)||(10340401-10340473)
[»] chr6 (1 HSPs)
chr6 (417-559)||(10856969-10857108)
[»] chr8 (1 HSPs)
chr8 (1089-1231)||(28067302-28067445)
[»] chr4 (3 HSPs)
chr4 (454-559)||(26573884-26573989)
chr4 (29-135)||(560792-560899)
chr4 (454-512)||(560526-560579)
[»] chr7 (3 HSPs)
chr7 (484-583)||(45241666-45241765)
chr7 (825-882)||(30547812-30547869)
chr7 (658-710)||(45241561-45241614)


Alignment Details
Target: chr5 (Bit Score: 1162; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 1162; E-Value: 0
Query Start/End: Original strand, 20 - 1311
Target Start/End: Complemental strand, 36224168 - 36222879
Alignment:
Q  20 tcatatacggtgtttgtattttgatgttgaaataacacgactgttttttattataggttaaacatagtaacccttcttgttctaaatttgacgttgaaag 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  36224168 tcatatacggtgtttgtattttgatgttgaaataacatgactgttttttattataggttaaacatagcaacccttcttgttctaaaattgacgttgaaag 36224069  T
Q  120 aaagctaaggaagaacgagtgattgcagatgaaactggacgctcaagttgtctcttgtggttgaaaatatgatcttttgaagagttagttatggttttag 219  Q
    |||||||||||||||||||||||| || ||||||||||||||| |||||||||  |||||||||||||| ||| ||||||||| ||||||| |||| |||    
T  36224068 aaagctaaggaagaacgagtgattacatatgaaactggacgctgaagttgtct--tgtggttgaaaataagattttttgaagatttagttacggttgtag 36223971  T
Q  220 gaaagtgagaactttactttagagataaccttcaggattttgttcttttttaattttatgaattttggtttagacgcccttagtaattcttatggatttt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36223970 gaaagtgagaactttactttagagataaccttcaggattttgttcttttttaattttatgaattttggtttagacgcccttagtaattcttatggatttt 36223871  T
Q  320 tcttgtgtggattcttgataatgcttatggattcttatatattatggatttttcttgtatgaattcttgacaatgctcatttattcttacggatctttag 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36223870 tcttgtgtggattcttgataatgcttatggattcttatatattatggatttttcttgtatgaattcttgacaatgctcatttattcttacggatctttag 36223771  T
Q  420 tagaaatgatgaaagctattttggccgcaaacatttttggcttaggcatgttaagcatgagcatatcatatcaccatcaatttagatgtcaatattgaaa 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36223770 tagaaatgatgaaagctattttggccgcaaacatttttggcttaggcatgttaagcatgagcatat-atatcaccatcaatttagatgtcaatattgaaa 36223672  T
Q  520 attgtcgatttagaaaatctgtgtttgtgaactctaaaataaggaacccatgcagacttagtaacgaactaacaattttggtgtctagatgcagcaatct 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36223671 attgtcgatttagaaaatctgtgtttgtgaactctaaaataaggaaccaatgcagacttagtaacgaactaacaattttggtgtctagatgcagcaatct 36223572  T
Q  620 atttttggtttgctattttcatttatag-tatttgaagaaattaatattgcatgtttaaaggagtgactgtagtaggttttaattctttcttagatcaat 718  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36223571 atttttggtttgctattttcatttatagatatttgaagaaattaatattgcatgtttaaaggagtgactgtagtaggttttaattctttcttagatcaat 36223472  T
Q  719 gatcattcaattctttcaattgtttgttccaaaagttatccctgcaaaagttttaacatagaccttagggacaattttgacttgttttaagttcaatcgt 818  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36223471 gatcattcaattctttcaattgtttgttccaaaagttatccctgcaaatgttttaacatagaccttagggacaattttgacttgttttaagttcaatcgt 36223372  T
Q  819 ctcgaggaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtgactctttaatacttattagattgttgttgtgggaatt 918  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36223371 ctcgaggaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtgactctttaatacttattagattgttgttgtgggaatt 36223272  T
Q  919 gatgtttgttctcttgcaagctgaataattgttttgttcaatgtgcagacactagaagtgcttgagttgtctaaataaatcaaagataagttgaaaggaa 1018  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36223271 gatgtttgttctcttgcaagctgaataattgttttgttcaatgtgcagacactagaagtgcttgagttgtctaaataaatcaaagataagttgaaaggaa 36223172  T
Q  1019 ctgataaatatggtataattcttacttttgttgtattttaattcaagttagtt-gnnnnnnngagtagttaaaaacagttagtttttggttagctatttt 1117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||    
T  36223171 ctgataaatatggtataattcttacttttgttgtattttaattcaagttagttggaaaaaaagagtagttaaaaacagttagtttttggttagctatttt 36223072  T
Q  1118 gatggagttagttagttttgattgattacttgtattgcaagtaagcgacataagtagttgtatataagcttgtaatctcagattttcattactaatgaga 1217  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36223071 gatggagttagttag-tttgattgattacttgtattgcaagtaagccatataagtagttgtatataagcttgtaatctcagattttcattactaatgaga 36222973  T
Q  1218 acatagtttacaatcacattgatttctctttcttctcttttgatttctcctaattctctcccaatcttgattgcttgtgaatgaagcgatctct 1311  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36222972 acatagtttacaatcacattgatttctctttcttctctcttgatttctcctaattctctcccaatcttgattgcttgtgaatgaagtgatctct 36222879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 3e-76
Query Start/End: Original strand, 1081 - 1303
Target Start/End: Complemental strand, 36227157 - 36226933
Alignment:
Q  1081 agtagttaaaaacagttagtttttggttagctattttgatggagttagttagttttgattgattacttgtattgcaagtaagcgacataagtagttgtat 1180  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||| ||| |||    
T  36227157 agtagttaaaaacagttagttgtttgttagctattttgatcgagttggttggttttgattgattacttgtattgcaagtaagccacataagttgtt-tat 36227059  T
Q  1181 ataagcttgtaatctcagattttcattac----taatgagaacatagtttacaatcacattgatttctctttcttctcttttgatttctcctaattctct 1276  Q
    ||||||||||||||| |||||||||||||    ||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||    
T  36227058 ataagcttgtaatcttagattttcattactaaataatgagaacatagtttacaatcacattgatctctctttcttctctctt-atttcccctaattctct 36226960  T
Q  1277 cccaatcttgattgcttgtgaatgaag 1303  Q
    |||||||| ||||||||||||||||||    
T  36226959 cccaatctcgattgcttgtgaatgaag 36226933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 817 - 952
Target Start/End: Complemental strand, 36227322 - 36227185
Alignment:
Q  817 gtctcgaggaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtgactctttaatacttattagattgttgttg--tggg 914  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||  ||||    
T  36227322 gtctcgaggaggatgacgatgcaaaggctgcaattgcaatttcagtctccaaactcactcaggtgactctttagtacttattagattgttgttgtatggg 36227223  T
Q  915 aattgatgtttgttctcttgcaagctgaataattgttt 952  Q
    | ||||||||||||||||||||||||||| ||||||||    
T  36227222 agttgatgtttgttctcttgcaagctgaacaattgttt 36227185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 1e-81; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 30 - 413
Target Start/End: Complemental strand, 39427375 - 39426978
Alignment:
Q  30 tgtttgtattttgatgttgaaataacacgactgttttttattataggttaaacatagtaacccttcttgttctaaatttgacgttgaaagaaagctaagg 129  Q
    |||||||||| |||||||||||||||||  |||||||| |||||||||||||   ||| ||  ||||||| | ||| ||||  || ||||||||||||||    
T  39427375 tgtttgtattatgatgttgaaataacacagctgtttttaattataggttaaaatgagtcactgttcttgtcccaaaattgaaatttaaagaaagctaagg 39427276  T
Q  130 aagaacgagtgattg-cagatgaaactggacgctcaagttgtctct--tgtggttgaaaatatgatcttttgaagagttagttatggttttaggaaagtg 226  Q
    ||| || |||||||  |  ||||||| ||| |||||| ||||||||  |||| ||||||| ||| | || |||||| ||||| ||| ||  |||||||||    
T  39427275 aagtacaagtgattttcttatgaaaccggatgctcaaattgtctctcttgtgattgaaaacatgct-ttctgaagatttagtcatgcttgcaggaaagtg 39427177  T
Q  227 agaactttactttagagataaccttcaggattttgttcttttttaattttatgaattttggtttagacgcccttagtaattcttatggatttttcttgtg 326  Q
    |||||||| |||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||     
T  39427176 agaactttgcttttgagataacctcgaggattttgttcttgtttaattttatgaattttggtttagacgctcttggtaattcttatggatttttcttgta 39427077  T
Q  327 tggattcttgataatg------------cttatggattcttatatattatggatttttcttgtatgaattcttgacaatgctcatttattcttacggat 413  Q
    ||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  39427076 tggattcttgataatgttcttgataattcttatggattcttatatattatggatttttcttgtatgaattcttgacaatgctcatggattcttatggat 39426978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 601 - 757
Target Start/End: Complemental strand, 39426791 - 39426636
Alignment:
Q  601 tgtctagatgcagcaatctatttttggtttgctattttcatttatagtatttgaagaaattaatattgcatgtttaaaggagtgactgtagtaggtttta 700  Q
    ||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  39426791 tgtctagatgcagcaatctatttttggttttttattttcatttttagtatttgaagaaattaatattgcatgtttaaaggagcgactgccgtaggtttta 39426692  T
Q  701 attctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaagttat 757  Q
    |||| |||||| |||||||||||||||||||||||| | |||||||| |||||||||    
T  39426691 attc-ttcttaaatcaatgatcattcaattctttcagtagtttgttcgaaaagttat 39426636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 400 - 559
Target Start/End: Complemental strand, 39426967 - 39426810
Alignment:
Q  400 ttattcttacggatctttagtagaaatgatgaaagctattttggccgcaaacatttttggcttaggcatgttaagcatgagcatatcatatcaccatcaa 499  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| | ||||||||| |||| |||||||  ||||||||||||||    
T  39426967 ttattcttacggatctttagtagaaatgataaaagctattttggctgcaaagatttttgacataggcatgtgaagcttgagcat--catatcaccatcaa 39426870  T
Q  500 tttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaaat 559  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  39426869 tttaaatgtcaatattgaaaatggtcgatctagaaaatctgtgtttgtgaactctaaaat 39426810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 624 - 807
Target Start/End: Complemental strand, 39426101 - 39425909
Alignment:
Q  624 ttggtttgctattttcatttatagtatttgaagaaat-taatattgcatgtttaaaggagtgactgtagtaggttttaattctttcttagatcaatgatc 722  Q
    ||||||||||||||||  || |||||||||||||||| |||||||||| |||||||||||  ||||| |||||||||||||||||| |||||||||||||    
T  39426101 ttggtttgctattttcggttttagtatttgaagaaatctaatattgcaggtttaaaggagctactgttgtaggttttaattctttcgtagatcaatgatc 39426002  T
Q  723 attcaattctttcaattgtttgttccaaaagttatccctgcaa--------aagttttaacatagaccttagggacaattttgacttgtttta 807  Q
    |||||||| |||||||||||||||  ||||||||||||||| |        ||||||||||||||| ||||||||||||||||||||||||||    
T  39426001 attcaattgtttcaattgtttgtttgaaaagttatccctgctagcagttttaagttttaacatagatcttagggacaattttgacttgtttta 39425909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 411 - 521
Target Start/End: Complemental strand, 39426258 - 39426150
Alignment:
Q  411 gatctttagtagaaatgatgaaagctattttggccgcaaacatttttggcttaggcatgttaagcatgagcatatcatatcaccatcaatttagatgtca 510  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||| ||||||||||  ||||||||||  ||||||||||||||     
T  39426258 gatctttagtagaaatgataaaagctattttggctgcaaagatttttggcataggcatgtgaagcatgagc--atcatatcacagtcaatttagatgtcc 39426161  T
Q  511 atattgaaaat 521  Q
    |||||||||||    
T  39426160 atattgaaaat 39426150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 39426395 - 39426340
Alignment:
Q  297 ccttagtaattcttatggatttttcttgtgtggattcttgataatgcttatggatt 352  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  39426395 ccttggtaattcttatggatttttcttgtatggattcttgataattcttatggatt 39426340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 39426348 - 39426296
Alignment:
Q  361 ttatggatttttcttgtatgaattcttgacaatgctcatttattcttacggat 413  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||| ||||    
T  39426348 ttatggatttttcttgtatgagttcttgacaatgctcatggattcttatggat 39426296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 39426354 - 39426300
Alignment:
Q  303 taattcttatggatttttcttgtgtggattcttgataatgcttatggattcttat 357  Q
    ||||||||||||||||||||||| ||  ||||||| |||||| ||||||||||||    
T  39426354 taattcttatggatttttcttgtatgagttcttgacaatgctcatggattcttat 39426300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 5e-50; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 28 - 290
Target Start/End: Original strand, 8580769 - 8581042
Alignment:
Q  28 ggtgtttgtattttgatgttgaaata--acacgactgtttt-ttattataggttaaacatagtaacccttcttgttctaaatttgacgttgaaagaaagc 124  Q
    |||||||||||||||||||| |||||  ||| ||||||||| |||||||||||||||   ||| ||||||||||| | ||| ||||| ||||||||||||    
T  8580769 ggtgtttgtattttgatgttaaaatataacatgactgtttttttattataggttaaattcagtcacccttcttgtccgaaaattgacattgaaagaaagc 8580868  T
Q  125 taaggaagaacgagtga-ttgcagatgaaactggacgctcaagttg--tctcttgtggttgaaaatatgatcttttgaagagttagttatggttttag-- 219  Q
    ||||||||||| ||| | ||||||||||||| ||| ||||||||||  ||||||||| | ||||||||||| ||||||||| |||||||||||| |||      
T  8580869 taaggaagaacaagttatttgcagatgaaaccggatgctcaagttgtctctcttgtgatggaaaatatgat-ttttgaagatttagttatggttgtagaa 8580967  T
Q  220 ----gaaagtgagaactttactttagagataaccttcaggattttgttcttttttaattttatgaattttggttt 290  Q
        ||||||||||||||| |||||| || |||| ||| |||||||||||| ||| |||||||| ||||||||||    
T  8580968 ctttgaaagtgagaactttgctttagtgacaaccatcatgattttgttcttgttttattttatggattttggttt 8581042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 485 - 762
Target Start/End: Complemental strand, 9300899 - 9300646
Alignment:
Q  485 tcatatcaccatcaatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaaataaggaacccatgcagacttagtaac 584  Q
    |||||||||  |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| ||| |  |||     ||||||||     
T  9300899 tcatatcacagtcaatttagatgtcaatattgaaaatggtcgatttaaaaaatttgtgtttgtgaactctaaaatgaggcaagcat-----cttagtaat 9300805  T
Q  585 gaactaacaattttggtgtctagatgcagcaatctatttttggtttgctattttcatttatagtatttgaagaaattaatattgcatgtttaaaggagtg 684  Q
    |        |||||||| || |||||||||||||| |||||||||||||||||| || | ||||||||| |           ||||||||||||||| |     
T  9300804 g--------attttggtatccagatgcagcaatctctttttggtttgctattttgatatttagtatttgga-----------tgcatgtttaaaggaatt 9300724  T
Q  685 actgtagtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaagttatccctg 762  Q
     || | ||||||||||||||||||  |||||||||||||||||||||||  |||| ||||||| |||| ||| |||||    
T  9300723 cctattgtaggttttaattctttcacagatcaatgatcattcaattcttctaattatttgttcgaaaaattacccctg 9300646  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 454 - 559
Target Start/End: Complemental strand, 10346729 - 10346623
Alignment:
Q  454 ttttggcttaggcatgttaagcatgagcatatcatatcaccatcaatttagatgtcaatattgaaaattgtcgatttagaaaa----tctgtgtttgtga 549  Q
    |||| |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||| |||||| |||||||| |||||    | |||||||||||    
T  10346729 tttttgcttaggcatgtgaagcatgagcat--catatcaccatcaatttagatgtcaatatcgaaaatggtcgattt-gaaaatttgtatgtgtttgtga 10346633  T
Q  550 actctaaaat 559  Q
    ||||||||||    
T  10346632 actctaaaat 10346623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 484 - 762
Target Start/End: Complemental strand, 9287576 - 9287323
Alignment:
Q  484 atcatatcaccatcaatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaaataaggaacccatgcagacttagtaa 583  Q
    |||||||||| ||||||||||||||||| ||||||||| || |||||| || || ||||||||||||||||||| | ||| |  |||     ||||||||    
T  9287576 atcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaatatttgtgtttgtgaactctaaagtgaggcaagcat-----cttagtaa 9287482  T
Q  584 cgaactaacaattttggtgtctagatgcagcaatctatttttggtttgctattttcatttatagtatttgaagaaattaatattgcatgtttaaaggagt 683  Q
     |        |||||||| || || |||||| |||| ||||||||||||| ||||||||| ||||||||| |           ||||| || |||| | |    
T  9287481 tg--------attttggtatccagttgcagctatctctttttggtttgctgttttcatttttagtatttgga-----------tgcatattcaaagaaat 9287401  T
Q  684 gactgtagtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaagttatccctg 762  Q
    |||| | |||||||||||||| |||| |||||||||||||||||||||||  |||| ||||||| |||||||| |||||    
T  9287400 gactattgtaggttttaattc-ttctcagatcaatgatcattcaattcttctaattatttgttcgaaaagttacccctg 9287323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 343 - 514
Target Start/End: Original strand, 8581060 - 8581234
Alignment:
Q  343 cttatggattcttatatattatggatttttcttgtatgaattcttgacaat--gctcatt--tattcttacggatctttagtagaaatgatgaaagctat 438  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||    ||  | | |||  | |||||| |||||||||||||||||||| ||||||||    
T  8581060 cttatggattcttatatattatggatttttcttttatgggttcttatgcatttgataattccttttcttatggatctttagtagaaatgataaaagctat 8581159  T
Q  439 tttggccgcaaacatttttggcttaggcatgttaagcatgagcatatcatatc--accatcaatttagatgtcaatat 514  Q
    ||||||  |||| | ||||||||| || |||| ||||||||||  ||||||||  |||||||||||| ||||||||||    
T  8581160 tttggctacaaaga-ttttggctttggtatgtgaagcatgagc--atcatatcaaaccatcaatttaaatgtcaatat 8581234  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 462 - 559
Target Start/End: Complemental strand, 10351192 - 10351093
Alignment:
Q  462 taggcatgttaagcatgagcatatcatatcaccatcaatttagatgtcaatattgaaaattgtcgatttagaaaa----tctgtgtttgtgaactctaaa 557  Q
    ||||||||| |||||||| |||  ||||||||||||||| |||||||||||||||||||| ||||||||| ||||    | |||||||||||||||||||    
T  10351192 taggcatgtgaagcatgatcat--catatcaccatcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttgtgaactctaaa 10351095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 606 - 752
Target Start/End: Complemental strand, 9271599 - 9271464
Alignment:
Q  606 agatgcagcaatctatttttggtttgctattttcatttatagtatttgaagaaattaatattgcatgtttaaaggagtgactgtagtaggttttaattct 705  Q
    |||||||||||||| |||||||||| |||||||||||| ||||||||| |           |||| |||||||||| ||||| | |||||||||||||||    
T  9271599 agatgcagcaatctctttttggtttactattttcatttttagtatttgga-----------tgcacgtttaaaggaatgactattgtaggttttaattct 9271511  T
Q  706 ttcttagatcaatgatcattcaattctttcaattgtttgttccaaaa 752  Q
    || | | |||||||||||||||||||||  |||| ||||||| ||||    
T  9271510 ttatcaaatcaatgatcattcaattcttgtaattatttgttcaaaaa 9271464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 462 - 548
Target Start/End: Complemental strand, 10334715 - 10334631
Alignment:
Q  462 taggcatgttaagcatgagcatatcatatcaccatcaatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtg 548  Q
    ||||||||  ||||||||||||  ||||||||||||||| |||||||||||||||||||| ||||||||| ||||| ||| ||||||    
T  10334715 taggcatgcgaagcatgagcat--catatcaccatcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatttgtg 10334631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 485 - 548
Target Start/End: Complemental strand, 9271711 - 9271648
Alignment:
Q  485 tcatatcaccatcaatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtg 548  Q
    |||| |||| ||||||||||||||||||||||||||| ||||||||| || || || |||||||    
T  9271711 tcatgtcacaatcaatttagatgtcaatattgaaaatggtcgatttaaaagatttgggtttgtg 9271648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 454 - 529
Target Start/End: Complemental strand, 10340473 - 10340401
Alignment:
Q  454 ttttggcttaggcatgttaagcatgagcatatcatatcaccatcaatttagatgtcaatattgaaaattgtcgatt 529  Q
    ||||||| ||||||||| ||| ||||||||  |||| ||||||||||||||||||  ||||||||||| |||||||    
T  10340473 ttttggcgtaggcatgtgaagtatgagcat--cata-caccatcaatttagatgtatatattgaaaatggtcgatt 10340401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 417 - 559
Target Start/End: Original strand, 10856969 - 10857108
Alignment:
Q  417 tagtagaaatgatgaaagctattttggccgcaaacatttttggcttaggcatgttaagcatgagcatatcatatcaccatcaatttagatgtcaatattg 516  Q
    |||| ||| |||| |||||||||||||| ||||| ||||| ||| ||||||||| ||||||||||||  ||||||||| ||||||||||||| ||||||     
T  10856969 tagtggaactgataaaagctattttggctgcaaagatttt-ggcataggcatgtaaagcatgagcat--catatcaccttcaatttagatgtaaatattc 10857065  T
Q  517 aaaattgtcgatttagaaaatctgtgtttgtgaactctaaaat 559  Q
    || || ||||||||| ||||| |||||||||||||||||||||    
T  10857066 aatatggtcgatttaaaaaatttgtgtttgtgaactctaaaat 10857108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 1089 - 1231
Target Start/End: Original strand, 28067302 - 28067445
Alignment:
Q  1089 aaaacagttagtttttggttagctattttgatggagttagttagttttgattgattacttgtattgcaagtaagcgacataagtagttgtatataagctt 1188  Q
    |||||||||| |  || ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||  | |||| || ||||||| || | |    
T  28067302 aaaacagttattagtttgttagctattttgatggagttagttagttttgaataattacttgtattggaagtaagtcatataaataattgtataaaaacct 28067401  T
Q  1189 gtaatctcagattttca-ttactaatgagaacatagtttacaat 1231  Q
    ||||||||| || |||| |||||||||| |||||||||||||||    
T  28067402 gtaatctcatatcttcatttactaatgaaaacatagtttacaat 28067445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 454 - 559
Target Start/End: Complemental strand, 26573989 - 26573884
Alignment:
Q  454 ttttggcttaggcatgttaagcatgagcatatcatatcaccatcaatttagatgtcaatattgaaaattgtcgatttagaaaatctg--tgtttgtgaac 551  Q
    ||||||| ||||||||| |||| |||||||  ||||||||||||||| |||||||||||||||||| | | | ||||| ||||| ||  |||||||||||    
T  26573989 ttttggcataggcatgtgaagcttgagcat--catatcaccatcaatgtagatgtcaatattgaaattgggcaatttaaaaaatttgtatgtttgtgaac 26573892  T
Q  552 tctaaaat 559  Q
    ||||||||    
T  26573891 tctaaaat 26573884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 560899 - 560792
Alignment:
Q  29 gtgtttgtattttgatgttgaaataacacgactgtttttt-attataggttaaacatagtaacccttcttgttctaaatttgacgttgaaagaaagctaa 127  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||   | |  |||||||||| || || ||||| |||| | ||||||||    
T  560899 gtgtatgtattttgatgttgaaataacacgactgttttttcattataggtcaaattgaatcgcccttcttgtcctgaaattgacattgagaaaaagctaa 560800  T
Q  128 ggaagaac 135  Q
    ||||||||    
T  560799 ggaagaac 560792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 560579 - 560526
Alignment:
Q  454 ttttggcttaggcatgttaagcatgagcatatcatatcaccatcaatttagatgtcaat 512  Q
    ||||||| |||||||||   ||||||||||  |||||||||||||||||||||||||||    
T  560579 ttttggcataggcatgt---gcatgagcat--catatcaccatcaatttagatgtcaat 560526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 484 - 583
Target Start/End: Complemental strand, 45241765 - 45241666
Alignment:
Q  484 atcatatcaccatcaatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaaataaggaacccatgcagacttagtaa 583  Q
    ||||||||||||||||||||||||||||||||||| ||  | |||||| ||  | |||||||||||||| |||||| ||| |  |||| |||||||||||    
T  45241765 atcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctttgtgtttgtgaactataaaatgaggcaagcatgtagacttagtaa 45241666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 825 - 882
Target Start/End: Complemental strand, 30547869 - 30547812
Alignment:
Q  825 gaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtga 882  Q
    |||||||| ||||| || ||||||||||||||||| || ||| |||||||||||||||    
T  30547869 gaggatgatgatgccaaagccgcaattgcaatttccgtatccgaagttactcaggtga 30547812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 658 - 710
Target Start/End: Complemental strand, 45241614 - 45241561
Alignment:
Q  658 aattaatattgcatgtttaaaggagtgactg-tagtaggttttaattctttctt 710  Q
    |||||||||||||||||||||||| |||||| ||  ||||||||||||||||||    
T  45241614 aattaatattgcatgtttaaaggaatgactgttaaaaggttttaattctttctt 45241561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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