View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9049_low_11 (Length: 321)
Name: NF9049_low_11
Description: NF9049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9049_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 5034324 - 5034011
Alignment:
| Q |
1 |
ttgtataaacagaaagaat---gttctagtgtctatgctagtgttgtctctcgtggacagtgaaagataacagtttgttcaaattccaccacgctatagt |
97 |
Q |
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| T |
5034324 |
ttgtataaacagaaagaatattgttctagtgtctatgctagtgttgtctctcgtggacagtgaaagataacagtttgttcaaattccaccacgctatagt |
5034225 |
T |
|
| Q |
98 |
tttgttatataaatagtgtgtcttgaaataatagtgatttgttcaaatttgtctatagcatttttatggccaatcagtttaacttgtcacacattaacta |
197 |
Q |
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| T |
5034224 |
tttgttataaaaatagtgtgtcttgaaataatagtgatttgttcaaatttgtctatagcatttttatggccaatgagtttaacttgtcacacattaacta |
5034125 |
T |
|
| Q |
198 |
tacaaaggcagatataattttgagaggatactgtggttggaattcaaggcgtgctgttcaggttctggatacaatatttcccaatgtatcgatcatttgt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5034124 |
tacaaaggcagatataattttgagaggatactgtggttggaattcaaggcgtgctgttcaggttctggatacaatatttcccaatgtatcgatcatttgt |
5034025 |
T |
|
| Q |
298 |
gttacatgtctgtg |
311 |
Q |
| |
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|||||||||||||| |
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| T |
5034024 |
gttacatgtctgtg |
5034011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 56 - 301
Target Start/End: Complemental strand, 5039914 - 5039670
Alignment:
| Q |
56 |
agtgaaagataacagtttgttcaaattccaccacgctatagttttgttatataaatagtgtgtcttgaaataatagtgatttgttcaaatttgtctatag |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
5039914 |
agtgaaagataacagtttgttcaaattccaccacgctatagttt-gttatataaatagtgtgtcttgaaataatagtgatttgttcaaatttctatatag |
5039816 |
T |
|
| Q |
156 |
catttttatggccaatcagtttaacttgtcacacattaactatacaaaggcagatataattttgagaggatactgtggttggaattcaaggcgtgctgtt |
255 |
Q |
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| T |
5039815 |
catttttatggccaatgagtttaacttgtcacacattaactttacataggcagatataattttgagaggatactgtggttggaattcaaggcgtgctgtt |
5039716 |
T |
|
| Q |
256 |
caggttctggatacaatatttcccaatgtatcgatcatttgtgtta |
301 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
5039715 |
caggttctggatacaatatttcccaaggtattgatcatttgtgtta |
5039670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 25096449 - 25096361
Alignment:
| Q |
198 |
tacaaaggcagatataattttgagaggatactgtggttggaattcaaggcgtgctgttcaggttctggatacaatatttcccaatgtat |
286 |
Q |
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|||| |||| |||||| || || ||||||||| |||||||||| ||||||| ||||| ||||||||||||||||| |||||||| |||| |
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| T |
25096449 |
tacataggcggatatagttctgcgaggatactctggttggaatacaaggcgcgctgtgcaggttctggatacaatttttcccaaggtat |
25096361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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