View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9049_low_12 (Length: 253)
Name: NF9049_low_12
Description: NF9049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9049_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42910348 - 42910586
Alignment:
| Q |
1 |
ccagtgatgaaatcccaaacctattatgataaacaaattaatgtatcatcttcattaaaccattgcacatgaaaattttacaagattcttaatacataat |
100 |
Q |
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| T |
42910348 |
ccagtgatgaaatcccaaacctattatgataaacaaattaatgtatcatcttcattaaaccattgcacatgaaaattttacaagattcttaatacataat |
42910447 |
T |
|
| Q |
101 |
ctaatattgatcaccttgcatgttccgtcaagagagcttgatattaaaattgaaaagcaactgcaagttgtagctaaaagacctgttatggaggacatgt |
200 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910448 |
ctaatattgattaccttgcatgttccatcaagagagcttgatattaaaattgaaaagcaactgcaagttgtagctaaaagacctgttatggaggacatgt |
42910547 |
T |
|
| Q |
201 |
gccccgacaaacaatgtaataaaggattcgagctctctg |
239 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
42910548 |
gccccgacaaacaatgtaataaaggattcgagctttctg |
42910586 |
T |
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