View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9049_low_13 (Length: 253)
Name: NF9049_low_13
Description: NF9049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9049_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 1705278 - 1705044
Alignment:
| Q |
15 |
cagagactcacttagttttgtcttgtaannnnnnnggtcagttatggcagttggttaggaattggtttg-tgtttactcggttaatccatctaatattgt |
113 |
Q |
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||||||||| |||| |||||| |||||| || |||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
1705278 |
cagagactcgcttatttttgttttgtaatttttttggccagttatgacagttggttaggaattggtttggtgtttactcggttgatccatctaatattgt |
1705179 |
T |
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| Q |
114 |
ggatcatttctaccaatttggtacttcttccggctatggcaaatctcgatgttcgcttatgcatctgatttggttcgcttgttcgtgggtgttatcgaag |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1705178 |
ggatcatttctaccagtttggtacttcttccggctatgacaaatctcgatgttcgcttatgcatctgatttgattcgcttgttcgtgggtgttatcgaag |
1705079 |
T |
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| Q |
214 |
gaaagaaatgacaagtggtttcaaaataaagaaaa |
248 |
Q |
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||| |||||||||||| |||||||||||||||||| |
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| T |
1705078 |
gaaggaaatgacaagttgtttcaaaataaagaaaa |
1705044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 7516631 - 7516397
Alignment:
| Q |
15 |
cagagactcacttagttttgtcttgtaannnnnnnggtcagttatggcagttggttaggaattggtttg-tgtttactcggttaatccatctaatattgt |
113 |
Q |
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|||||||||||||| ||||||||||| | || ||||||||||| ||||||| ||||||| ||| ||||||||||| |||||||||||||||| |
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| T |
7516631 |
cagagactcacttatttttgtcttgtcatttttttggccagttatggcaattggttatgaattggcttgatgtttactcggcagatccatctaatattgt |
7516532 |
T |
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| Q |
114 |
ggatcatttctaccaatttggtacttcttccggctatggcaaatctcgatgttcgcttatgcatctgatttggttcgcttgttcgtgggtgttatcgaag |
213 |
Q |
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| T |
7516531 |
ggatcatttctatcagtttggtacttcttcaggctatggaaaatctcgatgttcgcttatgcatctgatttggtttgcttgttcgtgggtgttatggaag |
7516432 |
T |
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| Q |
214 |
gaaagaaatgacaagtggtttcaaaataaagaaaa |
248 |
Q |
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||||||||||||| || |||||||||||||||||| |
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| T |
7516431 |
gaaagaaatgacaggttgtttcaaaataaagaaaa |
7516397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 53 - 248
Target Start/End: Original strand, 16316001 - 16316197
Alignment:
| Q |
53 |
cagttatggcagttggttaggaattggtttg-tgtttactcggttaatccatctaatattgtggatcatttctaccaatttggtacttcttccggctatg |
151 |
Q |
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|||||||||||| |||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||| | |||||||||| || | |||||| |
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| T |
16316001 |
cagttatggcagctggttaggaattggcttggtgtttactcagcagatccatctaatattgtggatcatttctatctgtttggtacttttttcagctatg |
16316100 |
T |
|
| Q |
152 |
gcaaatctcgatgttcgcttatgcatctgatttggttcgcttgttcgtgggtgttatcgaaggaaagaaatgacaagtggtttcaaaataaagaaaa |
248 |
Q |
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|||||||||||||||||||||| | |||||||| ||| ||||||||||| ||||||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
16316101 |
gcaaatctcgatgttcgcttatacgtctgatttagtttgcttgttcgtgagtgttatggaaggaaagaaatgacatgttgtttcaaaataaagaaaa |
16316197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 53 - 247
Target Start/End: Original strand, 12808381 - 12808575
Alignment:
| Q |
53 |
cagttatggcagttggttaggaattggtttg-tgtttactcggttaatccatctaatattgtggatcatttctaccaatttggtacttcttccggctatg |
151 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||| | |||| ||||||||||||||||||||||| || |||||| |||||| |||||||| |
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| T |
12808381 |
cagttatggcagttggttaggaattggcttggtgtttactccgcagatccgtctaatattgtggatcatttctatcagtttggttcttcttacggctatg |
12808480 |
T |
|
| Q |
152 |
gcaaatctcgatgttcgcttatgcatctgatttggttcgcttgttcgtgggtgttatcgaaggaaagaaatgacaagtggtttcaaaataaagaaa |
247 |
Q |
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||||||||||||||||| |||| || |||||||||| ||||||||| | |||||| ||||||||||||||||| | ||||||||||||||||| |
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| T |
12808481 |
acaaatctcgatgttcgc-tatggatatgatttggtttgcttgttcgcagttgttatggaaggaaagaaatgacagattgtttcaaaataaagaaa |
12808575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 32991811 - 32991887
Alignment:
| Q |
150 |
tggcaaatctcgatgttcgcttatgcatctgatttggttcgcttgttcgtgggtgttatcgaaggaaagaaatgaca |
226 |
Q |
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||||||||| ||||| || || ||||| |||||||||| |||| || |||||| ||| ||||||||||||||||| |
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| T |
32991811 |
tggcaaatcacgatgctctctattgcatttgatttggtttgcttcctcatgggtgatatggaaggaaagaaatgaca |
32991887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 9781762 - 9781942
Alignment:
| Q |
50 |
ggtcagttatggcagttggttaggaattggtttg-tgtttactcggttaatccatctaatattgtggatcatttctaccaatttggtacttcttccggct |
148 |
Q |
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|
||||||||||||||||||||||| || ||| ||| |||||| || | |||||| ||||||||||||| |||| ||||| || | |||||||||||||| |
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| T |
9781762 |
ggtcagttatggcagttggttagaaactggcttggtgtttattcagcagatccatttaatattgtggattatttttaccagttcgctacttcttccggct |
9781861 |
T |
|
| Q |
149 |
atggcaaatctcgatgttcgcttatgcatctgatttggttcgcttgttcgtgggtgttatcgaaggaaagaaatgacaagt |
229 |
Q |
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|||| ||||| |||||||| ||| |||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||||| |
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| T |
9781862 |
atggtaaatcacgatgttctcttttgcatcagatgtggtttgcttgttcgtgggtgttatggaaggaaaggaatgacaagt |
9781942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 24997379 - 24997301
Alignment:
| Q |
148 |
tatggcaaatctcgatgttcgcttatgcatctgatttggttcgcttgttcgtgggtgttatcgaaggaaagaaatgaca |
226 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
24997379 |
tatggcaaatctcgatgttcgcttatgcatctgatttggtttgcttgttcgtgggtgttatggaaggaaagaaatgaca |
24997301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 98 - 226
Target Start/End: Original strand, 43005873 - 43006001
Alignment:
| Q |
98 |
atccatctaatattgtggatcatttctaccaatttggtacttcttccggctatggcaaatctcgatgttcgcttatgcatctgatttggttcgcttgttc |
197 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||| ||||| | ||| |||||||||||||| || |||||||||||||||| |||||||| |
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| T |
43005873 |
atccatctaatattgtggattatttctatcaatttggtacttcatccggttgtggtaaatctcgatgttctctattgcatctgatttggtttgcttgttc |
43005972 |
T |
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| Q |
198 |
gtgggtgttatcgaaggaaagaaatgaca |
226 |
Q |
| |
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||||||||||| |||||||||| |||||| |
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| T |
43005973 |
gtgggtgttatggaaggaaagatatgaca |
43006001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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