View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9049_low_2 (Length: 594)
Name: NF9049_low_2
Description: NF9049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9049_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 215 - 578
Target Start/End: Complemental strand, 10488860 - 10488496
Alignment:
| Q |
215 |
atcttatttgaatctttgtcccatctttcccacaagaaaatcatattttcatgtgctatcttttatattaactaaccacaaagcaaccattctttttctt |
314 |
Q |
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| T |
10488860 |
atcttatttgaatctttgtcccatctttcccacaagaaaatcatattttcatgtgctatcttttatattaactaaccacaaagcaaccattctttttctt |
10488761 |
T |
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| Q |
315 |
ttcacctatttgcaactttttcaaatcatttttactcagttatcacaaagtccccatttttcacttaaactaagtttcttcacaacttcttcaccccgca |
414 |
Q |
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| T |
10488760 |
ttcacctttttgcaactttttcaaatcatttttactcagttatcacaaagtccccatttttcacttaaactaagtttcttcacaacttcttcaccccgca |
10488661 |
T |
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| Q |
415 |
aagctccaccagaccaacaccatacttatttctcgtcttttccatatattctttaaagtttt-ctttcaattgtcaattgtttatcaatttccctcgaca |
513 |
Q |
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| T |
10488660 |
aagctccaccagaccaacaccatacttatttctcgtcttttccatatattctttaaagttttattttcaattgtcaattgtttatcaatttccctcgaca |
10488561 |
T |
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| Q |
514 |
acttcaaccttttttacttcgcaggaatttagtttctctatgttgctttgtttcccatttgattt |
578 |
Q |
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| T |
10488560 |
acttcaaccttttttacttcgcaggaatttagtttctctatgttgctttgtttcccatttgattt |
10488496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 10489587 - 10489369
Alignment:
| Q |
1 |
actctaatgaatctgcttgaaattgtcaaagaactcgttttttaagatggcaaaaattgaaaattttgagtattaaaatgttgataattttgcatgaagt |
100 |
Q |
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| T |
10489587 |
actctaatgaatctgcttgaaattgtcaaagaactcgttttttaagatggcaaaaattgaaaattttgagtattaaaatgttgataattttgcatgaagt |
10489488 |
T |
|
| Q |
101 |
tcaacaaagatagttgaaaattatattggttgagatccattcgacaaaaatatataattgaaaatgataagatgaaaaattgagtacaaaatatggtcaa |
200 |
Q |
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| T |
10489487 |
tcaacaaagatagttgaaaattatattggttgagatccattcgacaaaaatatataattgaaaatgataagatgaaaaattgagtacaaaatatggtcaa |
10489388 |
T |
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| Q |
201 |
ataggtaaccacctatctt |
219 |
Q |
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| T |
10489387 |
ataggtaaccacctatctt |
10489369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 34485602 - 34485641
Alignment:
| Q |
72 |
attaaaatgttgataattttgcatgaagttcaacaaagat |
111 |
Q |
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| T |
34485602 |
attaagatgttgataattttgcatgaaattcaacaaagat |
34485641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 2371025 - 2371093
Alignment:
| Q |
59 |
gaaaattttgagtattaaaatgttgataattttgcatgaagttcaacaaagatagttgaaaattatatt |
127 |
Q |
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|||||||||||| |||| |||||||||||||||| | || | ||||| ||| |||| ||||||||||| |
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| T |
2371025 |
gaaaattttgagaattaggatgttgataattttgcttaaaatgcaacatagacagttaaaaattatatt |
2371093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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