View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9049_low_3 (Length: 593)
Name: NF9049_low_3
Description: NF9049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9049_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 16 - 577
Target Start/End: Complemental strand, 155693 - 155131
Alignment:
| Q |
16 |
tcattcaactctaattaacaacaacacaaataaataaaagtaagagtattt-acttactcctggtttcttaggcacaactagcaaatgcctgagtccaag |
114 |
Q |
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| T |
155693 |
tcattcaactctaattaacaacaacacaaataaataaaagtaagagtattttacttactcctggtttcttaggcacaactagcaaatgcctgagtccaag |
155594 |
T |
|
| Q |
115 |
ctcccgaaacagaagagcagcttttgcaagagacattgtttcaacaacagtatatggagaagtatttgtgattggatgaagatcaacatacatttccatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
155593 |
ctcccgaaacagaagagcagcttttgcaagagacattgtttcaacaacagtatatggagaagtatttgtgattggatgaagatcaacatacatttccatc |
155494 |
T |
|
| Q |
215 |
tcctcttgtgaaatgtccaaatcctccacccttatccctcttcccaaacctggttttgcaaaatcccttgccttaaccttgttcactatagtagaccctg |
314 |
Q |
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| T |
155493 |
tcctcttgtgaaatgtccaaatcctccacccttatccctcttcccaaacctggttttgcaaaatcccttgccttaaccttgttcacaatagtagaccctg |
155394 |
T |
|
| Q |
315 |
tcatcaccctctccctagtgaacaatgtcttgtgcttgagaagcaccaaaagatgagacctcaacaccaacccacacaactccggagcatccgtcaaagg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
155393 |
tcatcaccctctccctagtgaacaatgtcttgtgcttgagaagcacccaaagatgagacctcaacaccaacccacacaactcgggagcatccgtcaaagg |
155294 |
T |
|
| Q |
415 |
aggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgcaatatattccccactttttcgatcccacaaaaagaaaacagtggacca |
514 |
Q |
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| T |
155293 |
aggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgcaatatattccccactttttcgatcccacaaaaagaaaacagtggacca |
155194 |
T |
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| Q |
515 |
gaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgcttccatataaggt |
577 |
Q |
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| T |
155193 |
gaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgcttccatataaggt |
155131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 367 - 576
Target Start/End: Original strand, 56469213 - 56469422
Alignment:
| Q |
367 |
atgagacctcaacaccaacccacacaactccggagcatccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgc |
466 |
Q |
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| T |
56469213 |
atgagacctcaaaaccaacccacataactctggagcttctaagaatggaggctcatcaatcacaggaaacccattatgtcgcgtcacctttaaagtgtgc |
56469312 |
T |
|
| Q |
467 |
aatatattccccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgctt |
566 |
Q |
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| T |
56469313 |
acaatattccccactttttcaataccagagaatgtaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcactt |
56469412 |
T |
|
| Q |
567 |
ccatataagg |
576 |
Q |
| |
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||| |||||| |
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| T |
56469413 |
ccaaataagg |
56469422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 168
Target Start/End: Original strand, 56468920 - 56469020
Alignment:
| Q |
68 |
cttactcctggtttcttaggcacaactagcaaatgcctgagtccaagctcccgaaacagaagagcagcttttgcaagagacattgtttcaacaacagtat |
167 |
Q |
| |
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|||||||| | | |||| ||||| || | |||||||||||| |||||||| || || |||| |||| ||| || |||||||||||||| ||||| |||| |
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| T |
56468920 |
cttactccggatgtctttggcaccaccaacaaatgcctgaggccaagctcacggaaaagaactgcagttttagctagagacattgtttccacaactgtat |
56469019 |
T |
|
| Q |
168 |
a |
168 |
Q |
| |
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| |
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|
| T |
56469020 |
a |
56469020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 24328780 - 24328867
Alignment:
| Q |
125 |
agaagagcagcttttgcaagagacattgtttcaacaacagtatatggagaagtatttgtgattggatgaagatcaacatacatttcca |
212 |
Q |
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|||| ||| ||||| ||||| ||||| || ||||| ||||| || || || ||||| || ||||||||||||||||||||||| |||| |
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| T |
24328780 |
agaatagcggctttagcaagtgacatagtctcaactacagtgtacggcgatgtattagttattggatgaagatcaacatacatatcca |
24328867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 576
Target Start/End: Original strand, 24329119 - 24329228
Alignment:
| Q |
467 |
aatatattccccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgctt |
566 |
Q |
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||||||||||| || |||||||| ||| |||| | | || |||||| || |||||||| | || | ||| |||||||||||| || || |||||||||| |
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| T |
24329119 |
aatatattcccaaccttttcgatgccagaaaaggtcatcaatggacccgagacaacatcacgtgtagctatattcctcatgtaaggttcggcatgtgctt |
24329218 |
T |
|
| Q |
567 |
ccatataagg |
576 |
Q |
| |
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||| |||||| |
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| T |
24329219 |
ccaaataagg |
24329228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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