View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9049_low_7 (Length: 404)
Name: NF9049_low_7
Description: NF9049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9049_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 7112447 - 7112076
Alignment:
| Q |
17 |
accttgatggttgtgtgaaggatgagcttatgtggaaaattcacatgcaattttataccttcaaaataattttagtcatgccttctctatcactttaact |
116 |
Q |
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| T |
7112447 |
accttgatggttgagtgaaggatgagcttatgtggaaaattcacatgcaattttatatcttcaaaataattttagtcatgccttctctatcactttaact |
7112348 |
T |
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| Q |
117 |
gagatgccaaggagaattatgaaatgaagtgaaaatcacatgttgaagtcatagatatcactagcctgtaagtatttttaaatattaataccgcaattga |
216 |
Q |
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| T |
7112347 |
gagatgccaaggagaatcatgaaatgaagtgaaaatcacatactgaagtcatagatatcactagcctgtaagta-ttttcaatattaatactgcaattga |
7112249 |
T |
|
| Q |
217 |
tatgattttcatgcataaaagttggggggaaatgaaaagtaaactacatattgaatgataaaatttaatatcttctaccttatatataattttactatct |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| |
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| T |
7112248 |
tatgattttcatgcataaaagttgggggaaaatgaaaagtaaactacatattgaataataaaatttaatatcttctaact--tatataattttactatct |
7112151 |
T |
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| Q |
317 |
ttaa--tgtggatttgttctttaccacgttgcgccttcttgttttctattctttaactcaattttaatgatttct |
389 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7112150 |
ttaatgtgtggatttgttctttaccacgttgcgacttcttgttttctattctttaactcaattttaatgatttct |
7112076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 125 - 391
Target Start/End: Original strand, 9976596 - 9976863
Alignment:
| Q |
125 |
aaggagaattatgaaatgaagtgaaaatcacatgttgaagtcatagatatcactagcctgtaagtatttttaaatattaataccgcaattgatatgattt |
224 |
Q |
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| T |
9976596 |
aaggagaattaagaaatgaagtggaaatcacatgttgaagtgatagata-cactagctcgtaaatatttgcaa-tattaataccacaattgataggattt |
9976693 |
T |
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| Q |
225 |
tcatgcataaaagttggggggaaat-----gaaaagtaaactacatattgaatgataaaatttaatatcttctaccttatatataattttactatcttta |
319 |
Q |
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| T |
9976694 |
acatgcataaaatttggcggaaaaacacaagaaaataaaactacatattgaatgttaaaatttaatatcttctaccttaaata--attttactatatttg |
9976791 |
T |
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| Q |
320 |
atgtggatttgttctttaccacgttgcgccttcttgttttctattctttaactcaattttaatgatttctct |
391 |
Q |
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| T |
9976792 |
atatggatttgttctttaccacattgcaccttcttgttttctattctctagctcaatttcaacgatttctct |
9976863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 9976475 - 9976583
Alignment:
| Q |
65 |
aattttataccttcaaaataattttagtcatgccttctctatcactttaactgagatgccaaggagaattatgaaatgaagtgaaaatcacatgttgaag |
164 |
Q |
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| T |
9976475 |
aattttataccttcaaaataattttattcatgccttctctatcacttaaattgagatgcagaggagaattatgaaatgaagtggaaatcacatgttgaag |
9976574 |
T |
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| Q |
165 |
tcatagata |
173 |
Q |
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| T |
9976575 |
tgatagata |
9976583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 5644332 - 5644413
Alignment:
| Q |
79 |
aaaataattttagtcatgccttctctatcactttaactgagatgccaaggagaattatgaaatgaagtgaaaatcacatgtt |
160 |
Q |
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| T |
5644332 |
aaaataattttattcataccttctccatcactttaactgagatgcaatgaagaattatgaaatatagtggaaatcacatgtt |
5644413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 386
Target Start/End: Original strand, 5794439 - 5794605
Alignment:
| Q |
210 |
caattgatatgattttcatgcataaaagttggggggaaatgaaaagtaaactacatattgaatgataaaatttaatatcttctaccttatatataatttt |
309 |
Q |
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||||||||||||||||| |||||||||||||| | ||||| |||| |||||||||||| ||||||| ||| || |||||||||| | || |
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| T |
5794439 |
caattgatatgattttcgtgcataaaagttgg------aagaaaacctaactgcatattgaatgacaaaatttcatacct---accttatata--agtta |
5794527 |
T |
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| Q |
310 |
actatctttaatgtggatttgttctttaccacgttg-cgccttcttgttttctattctttaactcaattttaatgatt |
386 |
Q |
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| T |
5794528 |
actatctttgagatagatttgttctttatctcattgtcgccttcttgttttctatttcctaactcaattttaatgatt |
5794605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 5674680 - 5674742
Alignment:
| Q |
79 |
aaaataattttagtcatgccttctctatcactttaactgagatgccaaggagaattatgaaat |
141 |
Q |
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|||||||||||| |||| ||||||| ||||| ||||||||||||| ||| ||||||| ||||| |
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| T |
5674680 |
aaaataattttattcataccttctccatcacattaactgagatgcaaagaagaattacgaaat |
5674742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 5684179 - 5684241
Alignment:
| Q |
79 |
aaaataattttagtcatgccttctctatcactttaactgagatgccaaggagaattatgaaat |
141 |
Q |
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|||||||||||| |||| ||||||| ||||| ||||||||||||| ||| ||||||| ||||| |
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| T |
5684179 |
aaaataattttattcataccttctccatcacattaactgagatgcaaagaagaattacgaaat |
5684241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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