View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9049_low_9 (Length: 363)
Name: NF9049_low_9
Description: NF9049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9049_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 144 - 353
Target Start/End: Complemental strand, 25819655 - 25819443
Alignment:
| Q |
144 |
aagggtcgagattccgaataactattatgtcacttgagagaatcttctcccgcaagcaatagggttttctttgtcaagttcc---acaattagggttaaa |
240 |
Q |
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| T |
25819655 |
aagggtcgagattccgaataactataatgtcacttgagagaatcttctcccgcaagcaatagggttttctttgtcaagttcctccacaattggggttaaa |
25819556 |
T |
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| Q |
241 |
aacgtattcgagacctacccttttatcatgttcatagttattatcaagacactcaactagggtgaacaagtaaattgaatttcttctctcattcctcatg |
340 |
Q |
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| T |
25819555 |
aacgtattcaagacctacccttttatcatgttcatagttattatcaagacactcaactagggtgaacaagtaaattgaatttcttctctcattcctcatg |
25819456 |
T |
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| Q |
341 |
tttctcacaggtt |
353 |
Q |
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| T |
25819455 |
tttctcaaaggtt |
25819443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 25819795 - 25819703
Alignment:
| Q |
4 |
aaatatgttaagtgtttttgtattaactaagaaaacataatctttgcttaagagtcacacatgttttctccattgaatcgattccacaattca |
96 |
Q |
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||||||||||||||||||||| |||||||||| | |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
25819795 |
aaatatgttaagtgtttttgtcttaactaagacagcataatctttcattaagagtctctcatgttttctccattgaatcgattccacaattca |
25819703 |
T |
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