View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9050_low_1 (Length: 857)

Name: NF9050_low_1
Description: NF9050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9050_low_1
NF9050_low_1
[»] chr6 (5 HSPs)
chr6 (18-837)||(141433-142253)
chr6 (18-837)||(149454-150274)
chr6 (653-837)||(153915-154099)
chr6 (722-788)||(32678109-32678175)
chr6 (735-788)||(32676400-32676453)
[»] chr2 (3 HSPs)
chr2 (499-590)||(45341594-45341685)
chr2 (520-567)||(21469578-21469625)
chr2 (482-543)||(1755423-1755484)
[»] chr8 (4 HSPs)
chr8 (482-582)||(17008815-17008915)
chr8 (482-582)||(17540035-17540135)
chr8 (146-255)||(17009142-17009251)
chr8 (146-255)||(17539699-17539808)
[»] chr7 (2 HSPs)
chr7 (482-582)||(45828969-45829069)
chr7 (146-255)||(45828633-45828742)
[»] chr1 (1 HSPs)
chr1 (478-540)||(12793871-12793933)


Alignment Details
Target: chr6 (Bit Score: 769; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 18 - 837
Target Start/End: Complemental strand, 142253 - 141433
Alignment:
Q  18 catcaatggaaagtttatcaatgtcatgtgattcctcaatcgaacagactacataatcaaattttgaagtcattgatcgtagaattttttcaacaatagt 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  142253 catcaatggaaagtttatcaatgtcatgcgattcctcaatcgaacagactacataatcaaattttgaagtcattgatcgtagaattttttcaacaatagt 142154  T
Q  118 aacatcttgtagtttctcgccatggatacgcatattgtttgcaattgccattgtccttgcaaaatagtcactgaccgactctcccatcttcatatgaaga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  142153 aacatcttgtagtttctcgccatggatacgcatattgtttgcaattgccattgtccttgcaaaatagtcacttaccgactctcccatcttcatatgaaga 142054  T
Q  218 atctcaaaatctcttcgaagggcttgaagttgtgcacgcttcacttttgctgtcccttgatatttgagtttcattgaatcccaaatttgcttgctggtgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  142053 atctcaaaatctcttcgaagggcttgaagttgtgcacgcttcacttttgctgtcccttgatatttgagtttcattgaatcccaaatttgcttgctggtgt 141954  T
Q  318 ctttctgaagaatagtttccaagactgtacgatcaatagcctggaataaataatttttcaccttcaagtccttcaatttttgttcttcacgttgcttctc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  141953 ctttctgaagaatagtttccaagactgtacgatcaatagcctggaataaataatttttcaccttcaagtccttcaatttttgttcttcccgttgcttctc 141854  T
Q  418 ctgagcggctgtcaacactgttccttctggataaattgtgatgccaacttcaactaatggccagtactctttcgatcgcaaaaaattctccatcaacata 517  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  141853 ctgagcggctgtcaacaccgttccttctggataaattgtgatgccaacttcaactaatggccagtactctttcgatcgcaaaaaattttccatcaacata 141754  T
Q  518 gcccaatggtcatggtgaccatcaaagcgtggaattgctggttgcacaaagttgctattttcagatgccatttgctacggcaagaaagctgctgcttcaa 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  141753 gcccaatggtcatggtgaccatcaaagcgtggaattgctggttgcacaaagttgctattttcatatgccatttgctacggcaagaaagctgctgcttcaa 141654  T
Q  618 tctctatcaggcccagggtaggct-ctgataccaaatgtaaaaacactcacagataattgtaacaaaaatatgagaagggaaaaactaaattaattgaac 716  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  141653 tctctatcagacccagggtaggctcctgataccaaatgtaaaaacactcacagataattgtaacaaaaatatgagaagagaaaaactgaattaattgaac 141554  T
Q  717 caacaaagtacaggcttgtgtagccttttacataggaattaaaataatcacccactaccacatcctaaaacgtggagcacactaactgaaacaaaatact 816  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  141553 caacaaagtgcaggcttgtgtagccttttacataggaattaaaataaccacccactaccacatcctaaaacgtggagcacactaactgaaacaaaatact 141454  T
Q  817 gattaaacaactcaaagttac 837  Q
    |||||||||||||||||||||    
T  141453 gattaaacaactcaaagttac 141433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 18 - 837
Target Start/End: Complemental strand, 150274 - 149454
Alignment:
Q  18 catcaatggaaagtttatcaatgtcatgtgattcctcaatcgaacagactacataatcaaattttgaagtcattgatcgtagaattttttcaacaatagt 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  150274 catcaatggaaagtttatcaatgtcatgcgattcctcaatcgaacagactacataatcaaattttgaagtcattgatcgtagaattttttcaacaatagt 150175  T
Q  118 aacatcttgtagtttctcgccatggatacgcatattgtttgcaattgccattgtccttgcaaaatagtcactgaccgactctcccatcttcatatgaaga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  150174 aacatcttgtagtttctcgccatggatacgcatattgtttgcaattgccattgtccttgcaaaatagtcacttaccgactctcccatcttcatatgaaga 150075  T
Q  218 atctcaaaatctcttcgaagggcttgaagttgtgcacgcttcacttttgctgtcccttgatatttgagtttcattgaatcccaaatttgcttgctggtgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  150074 atctcaaaatctcttcgaagggcttgaagttgtgcacgcttcacttttgctgtcccttgatatttgagtttcattgaatcccaaatttgcttgctggtgt 149975  T
Q  318 ctttctgaagaatagtttccaagactgtacgatcaatagcctggaataaataatttttcaccttcaagtccttcaatttttgttcttcacgttgcttctc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  149974 ctttctgaagaatagtttccaagactgtacgatcaatagcctggaataaataatttttcaccttcaagtccttcaatttttgttcttcccgttgcttctc 149875  T
Q  418 ctgagcggctgtcaacactgttccttctggataaattgtgatgccaacttcaactaatggccagtactctttcgatcgcaaaaaattctccatcaacata 517  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  149874 ctgagcggctgtcaacaccgttccttctggataaattgtgatgccaacttcaactaatggccagtactctttcgatcgcaaaaaattttccatcaacata 149775  T
Q  518 gcccaatggtcatggtgaccatcaaagcgtggaattgctggttgcacaaagttgctattttcagatgccatttgctacggcaagaaagctgctgcttcaa 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  149774 gcccaatggtcatggtgaccatcaaagcgtggaattgctggttgcacaaagttgctattttcatatgccatttgctacggcaagaaagctgctgcttcaa 149675  T
Q  618 tctctatcaggcccagggtaggct-ctgataccaaatgtaaaaacactcacagataattgtaacaaaaatatgagaagggaaaaactaaattaattgaac 716  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  149674 tctctatcagacccagggtaggctcctgataccaaatgtaaaaacactcacagataattgtaacaaaaatatgagaagagaaaaactgaattaattgaac 149575  T
Q  717 caacaaagtacaggcttgtgtagccttttacataggaattaaaataatcacccactaccacatcctaaaacgtggagcacactaactgaaacaaaatact 816  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  149574 caacaaagtgcaggcttgtgtagccttttacataggaattaaaataaccacccactaccacatcctaaaacgtggagcacactaactgaaacaaaatact 149475  T
Q  817 gattaaacaactcaaagttac 837  Q
    |||||||||||||||||||||    
T  149474 gattaaacaactcaaagttac 149454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 653 - 837
Target Start/End: Complemental strand, 154099 - 153915
Alignment:
Q  653 tgtaaaaacactcacagataattgtaacaaaaatatgagaagggaaaaactaaattaattgaaccaacaaagtacaggcttgtgtagccttttacatagg 752  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  154099 tgtaaaaacactcaaagataattgtaacaaaaatatgagaagggaaaaactgaattaattgaaccaacaaagtacaggcttgtgtagccttttacatagg 154000  T
Q  753 aattaaaataatcacccactaccacatcctaaaacgtggagcacactaactgaaacaaaatactgattaaacaactcaaagttac 837  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  153999 aattaaaataaccacccactaccacatcctaaaacgtggagcacactaactgaaacaaaatactgattaaacaactcaaagttac 153915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 722 - 788
Target Start/End: Complemental strand, 32678175 - 32678109
Alignment:
Q  722 aagtacaggcttgtgtagccttttacataggaattaaaataatcacccactaccacatcctaaaacg 788  Q
    |||||||| | |||||||||||||| ||||||||||||||||  ||| |||||||||| || |||||    
T  32678175 aagtacagacatgtgtagccttttatataggaattaaaataacaaccgactaccacattcttaaacg 32678109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 788
Target Start/End: Original strand, 32676400 - 32676453
Alignment:
Q  735 tgtagccttttacataggaattaaaataatcacccactaccacatcctaaaacg 788  Q
    |||||||||||| ||||||||||||||||  ||| |||||||||| || |||||    
T  32676400 tgtagccttttatataggaattaaaataacaaccgactaccacattcttaaacg 32676453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 499 - 590
Target Start/End: Complemental strand, 45341685 - 45341594
Alignment:
Q  499 aaaattctccatcaacatagcccaatggtcatggtgaccatcaaagcgtggaattgctggttgcacaaagttgctattttcagatgccattt 590  Q
    |||||||||||| | |||||||||||||||||  |||||||||||    || |||||||||||||||||||||||| ||||||||| |||||    
T  45341685 aaaattctccatgagcatagcccaatggtcataatgaccatcaaacttagggattgctggttgcacaaagttgctactttcagatgacattt 45341594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 520 - 567
Target Start/End: Original strand, 21469578 - 21469625
Alignment:
Q  520 ccaatggtcatggtgaccatcaaagcgtggaattgctggttgcacaaa 567  Q
    ||||||||||| |||||||||||| ||||||||||||||||| |||||    
T  21469578 ccaatggtcatagtgaccatcaaaacgtggaattgctggttgtacaaa 21469625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 543
Target Start/End: Original strand, 1755423 - 1755484
Alignment:
Q  482 tactctttcgatcgcaaaaaattctccatcaacatagcccaatggtcatggtgaccatcaaa 543  Q
    ||||||||||||| ||| | ||| ||||||||||||| |||||| |||| ||||||||||||    
T  1755423 tactctttcgatctcaagagattttccatcaacatagaccaatgatcatagtgaccatcaaa 1755484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 482 - 582
Target Start/End: Complemental strand, 17008915 - 17008815
Alignment:
Q  482 tactctttcgatcgcaaaaaattctccatcaacatagcccaatggtcatggtgaccatcaaagcgtggaattgctggttgcacaaagttgctattttcag 581  Q
    |||||||||||||||| |||||| ||||||||||||  |||||| |||| ||||||||  ||||||||||| || ||||| |||||  |||| |||||||    
T  17008915 tactctttcgatcgcagaaaattttccatcaacatactccaatgatcatagtgaccattgaagcgtggaatagcaggttgaacaaaactgctgttttcag 17008816  T
Q  582 a 582  Q
    |    
T  17008815 a 17008815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 482 - 582
Target Start/End: Original strand, 17540035 - 17540135
Alignment:
Q  482 tactctttcgatcgcaaaaaattctccatcaacatagcccaatggtcatggtgaccatcaaagcgtggaattgctggttgcacaaagttgctattttcag 581  Q
    |||||||||||||||| |||||| ||||||||||||  |||||| |||| ||||||||  ||||||||||| || ||||| |||||  |||| |||||||    
T  17540035 tactctttcgatcgcagaaaattttccatcaacatactccaatgatcatagtgaccattgaagcgtggaatagcaggttgaacaaaactgctgttttcag 17540134  T
Q  582 a 582  Q
    |    
T  17540135 a 17540135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 17009251 - 17009142
Alignment:
Q  146 cgcatattgtttgcaattgccattgtccttgcaaaatagtcactgaccgactctcccatcttcatatgaagaatctcaaaatctcttcgaagggcttgaa 245  Q
    ||||| ||||||||||||| || ||| |||| |||||| ||| |||| || |||||   |||||| |||||||| ||||| ||| | ||||| ||||| |    
T  17009251 cgcatcttgtttgcaattgacagtgttcttgaaaaataatcattgactgattctccttccttcatgtgaagaatttcaaactctttgcgaagagcttgga 17009152  T
Q  246 gttgtgcacg 255  Q
    ||||||||||    
T  17009151 gttgtgcacg 17009142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 17539699 - 17539808
Alignment:
Q  146 cgcatattgtttgcaattgccattgtccttgcaaaatagtcactgaccgactctcccatcttcatatgaagaatctcaaaatctcttcgaagggcttgaa 245  Q
    ||||| || |||||||||| || ||| |||| |||||| ||| |||| || |||||   |||||| |||||||| ||||| ||| | ||||| ||||| |    
T  17539699 cgcatcttatttgcaattgacaatgttcttgaaaaataatcattgactgattctccttccttcatgtgaagaatttcaaactctttgcgaagagcttgga 17539798  T
Q  246 gttgtgcacg 255  Q
    ||||||||||    
T  17539799 gttgtgcacg 17539808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 482 - 582
Target Start/End: Original strand, 45828969 - 45829069
Alignment:
Q  482 tactctttcgatcgcaaaaaattctccatcaacatagcccaatggtcatggtgaccatcaaagcgtggaattgctggttgcacaaagttgctattttcag 581  Q
    |||||||| ||||||| |||||| ||||||||||||  |||||| |||| ||||||||  ||||||||||| || ||||| |||||  |||| |||||||    
T  45828969 tactctttggatcgcagaaaattttccatcaacatactccaatgatcatagtgaccattgaagcgtggaatagcaggttgaacaaaactgctgttttcag 45829068  T
Q  582 a 582  Q
    |    
T  45829069 a 45829069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 45828633 - 45828742
Alignment:
Q  146 cgcatattgtttgcaattgccattgtccttgcaaaatagtcactgaccgactctcccatcttcatatgaagaatctcaaaatctcttcgaagggcttgaa 245  Q
    ||||| || |||||||||| || ||| |||| |||||| ||| |||| || |||||   |||||| |||||||| ||||| ||| | ||||| ||||| |    
T  45828633 cgcatcttatttgcaattgacaatgttcttgaaaaataatcattgactgattctccttccttcatgtgaagaatttcaaactctttgcgaagagcttgga 45828732  T
Q  246 gttgtgcacg 255  Q
    ||||||||||    
T  45828733 gttgtgcacg 45828742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 478 - 540
Target Start/End: Complemental strand, 12793933 - 12793871
Alignment:
Q  478 ccagtactctttcgatcgcaaaaaattctccatcaacatagcccaatggtcatggtgaccatc 540  Q
    ||||||||||||||||| ||| | ||| ||||||||||||| |||||| ||||  ||||||||    
T  12793933 ccagtactctttcgatctcaagagattttccatcaacatagaccaatgatcataatgaccatc 12793871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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