View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9050_low_11 (Length: 420)
Name: NF9050_low_11
Description: NF9050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9050_low_11 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 6646216 - 6645822
Alignment:
| Q |
1 |
gtctcaaaatctccccactctagacatcaatgccatatttggaaagctcaaggagcatgatcattaaattacaaggttgaaagctagtgaggaaagtgtt |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6646216 |
gtctcaaaatctccacactctagacatcaatgccataattggaaagctcaaggagcatgatcattaaattacaaggttgaaagctagtgaggaaagtgtt |
6646117 |
T |
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| Q |
101 |
aaaaagaaaaagaagaaatctaccgcattaaaagcctctttgtccaaggcaacctcttcagttccagaggataatgactctaatgaagattctccttgtg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6646116 |
aagaagaaaaagaagaaatctaccgcattaaaagcctctttgtccaaggcaacctcttcagttccagaggataatgactctaatgaagattctccttgtg |
6646017 |
T |
|
| Q |
201 |
aagaggatatgggattgtttgtaagacagtaaaaccgctatattcaaaagaatgataaaaaacatagtaacaaaaatttgatcaactatagaaagacttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6646016 |
aagaggatatgggattgtttgtaagacagtaaaaccgctatattcaaaagaatgata-aaaacatagtaacaaaaatttgatcaactatagaaagacttt |
6645918 |
T |
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| Q |
301 |
tatcaaagaggataatttggaaaggagtagaaaattatcaattgttgtggttctggaaaggtcgcccacttaagtaattaatgtccaaaactagtcaaag |
400 |
Q |
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| T |
6645917 |
catcaaagaggataatttggaaaggagtagaaaaatatcaattgttgtggttctggaaaggtcgcccac-----taattaatgtccaaaactagtcaaag |
6645823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 4500446 - 4500594
Alignment:
| Q |
1 |
gtctcaaaatctccccactctagacatcaatgccatatttggaaagctcaaggagcatgatcattaaattacaaggttgaaagctagtgaggaaagtgtt |
100 |
Q |
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| T |
4500446 |
gtctcgaaatctcaacactctagacatcaccgtcttatttggaaagctcaaggaacatgagcatgaaatgacaaggttgaaagttagtgagaaaaatgtt |
4500545 |
T |
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| Q |
101 |
aaaaagaaaaagaagaaatctaccgcattaaaagcctctttgtccaagg |
149 |
Q |
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| T |
4500546 |
aagaagaaggagaagaagttcatcgcattaaaagcctcttcttccaagg |
4500594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 254
Target Start/End: Original strand, 8837492 - 8837706
Alignment:
| Q |
40 |
tggaaagctcaaggagcatgatcattaaattacaaggttgaaagctagtgaggaaagtgttaaaaagaaaaagaagaaatctaccgcattaaaagcctct |
139 |
Q |
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|||||| |||||||| ||||| || |||| |||||||| |||| || || ||||||||| | ||||| ||||||| || | || ||||| | | || |
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| T |
8837492 |
tggaaatctcaaggaacatgagcagaaaatcacaaggtttaaagtaagcgaagaaagtgtttagaagaaggagaagaagtcaatcgtgttaaaggacact |
8837591 |
T |
|
| Q |
140 |
ttgtccaaggcaacctcttcagttccagaggataatgactctaatgaagattctccttgtgaagaggatatgggattgtttgtaagacagtaaaaccgct |
239 |
Q |
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| T |
8837592 |
tcgtccaaggtgacctcttgggttcaagaggatattgactctaatgaagattcacctagtgaagacgaactgaggttgtttgtaacacgatacaaacgct |
8837691 |
T |
|
| Q |
240 |
atattcaaaagaatg |
254 |
Q |
| |
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|| || ||||||||| |
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| T |
8837692 |
atgttaaaaagaatg |
8837706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 400
Target Start/End: Original strand, 8837762 - 8837853
Alignment:
| Q |
309 |
aggataatttggaaaggagtagaaaattatcaattgttgtggttctggaaaggtcgcccacttaagtaattaatgtccaaaactagtcaaag |
400 |
Q |
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|||||||||||| |||||| | ||| || | |||||||||| || ||||||||| | |||||||| ||||||||||| |||||| ||||| |
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| T |
8837762 |
aggataatttgggaaggagaacaaagttttaaattgttgtgattgtggaaaggttggtcacttaaggaattaatgtccggaactagccaaag |
8837853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 279
Target Start/End: Complemental strand, 9653285 - 9653116
Alignment:
| Q |
110 |
aagaagaaatctaccgcattaaaagcctctttgtccaaggcaacctcttcagttccagaggataatgactctaatgaagattctccttgtgaagaggata |
209 |
Q |
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||||||||| | | ||||||||| || | ||||||||||||||||| ||| |||| ||||||| ||| | || ||||||||||||| | || |||| | |
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| T |
9653285 |
aagaagaaacccatcgcattaaaggcatgtttgtccaaggcaaccttttcggttcatgaggatagtgattttagtgaagattctcctagggataaggaaa |
9653186 |
T |
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| Q |
210 |
tgggattgtttgtaagacagtaaaaccgctatattcaaaagaatgataaaaaacatagtaacaaaaattt |
279 |
Q |
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| T |
9653185 |
tgggattgtttgtgcgacgatacaacctctatactcaaaagaatggtctaaagcatagtaacaaaaattt |
9653116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 254
Target Start/End: Original strand, 5679 - 5897
Alignment:
| Q |
36 |
tatttggaaagctcaaggagcatgatcattaaattacaaggttgaaagctagtgaggaaagtgttaaaaagaaaaagaagaaatctaccgcattaaaagc |
135 |
Q |
| |
|
||||||||||| |||||||| ||| ||| |||| |||| ||||||| || |||| ||| | || | || | ||||||||||| | ||| ||||| || |
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| T |
5679 |
tatttggaaagatcaaggagtgtgagcatgaaataacaattttgaaagataatgagaaaaatatttagaaaacaaagaagaaattcatcgcgttaaatgc |
5778 |
T |
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| Q |
136 |
ctctttgtccaaggcaacctcttcagttccagaggataatgactctaatgaagattctccttgtgaagaggatatgggattgtttgtaagacagtaaaac |
235 |
Q |
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||||| || |||| |||||||| |||| ||| |||| |||||||||| ||||||||||| ||||| ||| || |||||||||||||||| ||| ||| |
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| T |
5779 |
ctcttaatcaaaggaaacctctttggttcaagatgatagtgactctaataaagattctcctagtgaacaggggattggattgtttgtaagacggtacaac |
5878 |
T |
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| Q |
236 |
cgctatattcaaaagaatg |
254 |
Q |
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| |||| ||||| ||||| |
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| T |
5879 |
cactatgctcaaaggaatg |
5897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 13119850 - 13119934
Alignment:
| Q |
36 |
tatttggaaagctcaaggagcatgatcattaaattacaaggttgaaagctagtgaggaaagtgttaaaaagaaaaagaagaaatc |
120 |
Q |
| |
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||||||||||||||||| | ||||| ||| |||| |||| |||||| ||| |||||||| |||||| |||||| |||||||||| |
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| T |
13119850 |
tatttggaaagctcaagtaacatgagcatgaaatcacaatattgaaatctaatgaggaaaatgttaataagaaagagaagaaatc |
13119934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 21845075 - 21845018
Alignment:
| Q |
36 |
tatttggaaagctcaaggagcatgatcattaaattacaaggttgaaagctagtgagga |
93 |
Q |
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||||||||||||||||||| ||||| ||| |||| |||||||||||| ||||||||| |
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| T |
21845075 |
tatttggaaagctcaaggaacatgagcatgaaatcgcaaggttgaaagttagtgagga |
21845018 |
T |
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Back To:
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