View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9050_low_12 (Length: 341)
Name: NF9050_low_12
Description: NF9050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9050_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 41703745 - 41704055
Alignment:
| Q |
17 |
ttctgtatcacaatatctaacttctttttggtt--------ataaaagtgaaaaccataaagttagaattaggagaaatt----gttttagagacgtaaa |
104 |
Q |
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| T |
41703745 |
ttctgtgtcacaatatctaacttctttttggttgatgatttataaaagtgaaaaccataaagttagaattaggagaaattaattgttttagagacgtaaa |
41703844 |
T |
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| Q |
105 |
tgaaactgactacttgagatnnnnnnnnncactatagacaatattggtgggtttgaaattggggtcccctaatcaatagctttgttatttggttaaacat |
204 |
Q |
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| T |
41703845 |
tgaaactgactacttgagat----------aaaaaaaacactattggtgggtttgaaattggggtcccctaatcaatagctttgctatttggttaaacat |
41703934 |
T |
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| Q |
205 |
gcacagtatattttgtaatggtagttagccaagccttttagcaccagaatttcactaccatttccacacaaaaaagggttctaagcaaggactgtgacag |
304 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
41703935 |
gcacagtatattttgtaatggttgttagccaagccttttagcatcagaatttcactactatttccacacagaaaagggttgtaagcaaggactgtgacag |
41704034 |
T |
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| Q |
305 |
gttttgaattcacaagaaaga |
325 |
Q |
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| T |
41704035 |
gttttgaattcacgagaaaga |
41704055 |
T |
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