View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9050_low_19 (Length: 233)
Name: NF9050_low_19
Description: NF9050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9050_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 53467256 - 53467037
Alignment:
| Q |
9 |
atgagatggacatcacattttcattcaaaatcataaggcattgggggcttatgcatcctctcacttatatattgctactttttcatctaatgttgaactt |
108 |
Q |
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| T |
53467256 |
atgagttggacaccacattttcattcaaaatcttaaggcattgggggcttatgcatcctctcacttatatattgctactttttcatctaatgttggactt |
53467157 |
T |
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| Q |
109 |
ctacctcacacttgctacacaacaatctccctctcaagtgtgggtcatccatccattcatttgtgtatgcccccctcaaatggatgctttttatatatac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
53467156 |
ctacctcacacttgctacacaacaatctccctctcaagtgtgggtcatccatccattcatttgtgtatgc-cccctcaaattgatgctttttatatatac |
53467058 |
T |
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| Q |
209 |
ttgcaccaccatactcgacag |
229 |
Q |
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|||||||||||| ||| |||| |
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| T |
53467057 |
ttgcaccaccatgctcaacag |
53467037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 45635976 - 45636047
Alignment:
| Q |
105 |
acttctacctcacacttgctacacaacaatctccctctcaagtgtgggtcatccatccattcatttgtgtat |
176 |
Q |
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| T |
45635976 |
acttctatctcacacttggtacacaacaatctccctctcaagtgtgagtcatccatccattcatttgggtat |
45636047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 13154520 - 13154560
Alignment:
| Q |
105 |
acttctacctcacacttgctacacaacaatctccctctcaa |
145 |
Q |
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| T |
13154520 |
acttctaactcatacttgctacacaacaatcttcctctcaa |
13154560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 42730342 - 42730284
Alignment:
| Q |
98 |
atgttgaacttctacctcacacttgctacacaacaatctccctctcaagtgtgggtcat |
156 |
Q |
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|||| ||||||||| |||| ||||||||||||||||||| || |||||||||| ||||| |
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| T |
42730342 |
atgtggaacttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtcat |
42730284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 135
Target Start/End: Complemental strand, 28483780 - 28483750
Alignment:
| Q |
105 |
acttctacctcacacttgctacacaacaatc |
135 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28483780 |
acttctacctcacacttgctacacaacaatc |
28483750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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