View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9050_low_20 (Length: 229)
Name: NF9050_low_20
Description: NF9050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9050_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 46406946 - 46407174
Alignment:
| Q |
1 |
tcatcatgaatacagaaaccccaaactacccctcgccggagttccaatcggaaaacccagaccacgtcctcgaaattgtcctcgaaaccgtcctccactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46406946 |
tcatcatgaatacagaaaccccaaactacccctcgccggagttccaatcggaaaacccagaccacgtcctcgaaattgtcctcgaaaccgtcctccactt |
46407045 |
T |
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| Q |
101 |
cctcacctcctgccgcgaccgtaacgccgcctcattagtctgcaaatcatggtaccgctcggaagctctcaccagatccgacctcttcatcggaaattgc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46407046 |
cctcacctcccgccgcgaccgtaacgccgcctcattagtctgcaaatcatggtaccgcacggaagctctcaccagatccgacctcttcatcggaaattgc |
46407145 |
T |
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| Q |
201 |
tactccgtctccccccgccgtgctacatc |
229 |
Q |
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| T |
46407146 |
tactccgtctccccccgccgtgctacatc |
46407174 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 27537641 - 27537727
Alignment:
| Q |
117 |
gaccgtaacgccgcctcattagtctgcaaatcatggtaccgctcggaagctctcaccagatccgacctcttcatcggaaattgctac |
203 |
Q |
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| T |
27537641 |
gaccgaaactccgcctcattggtctgtcgttcatggtaccgtgcggaagccctcacacgatccgacctcttcatcggaaactgctac |
27537727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 13512760 - 13512809
Alignment:
| Q |
166 |
ctctcaccagatccgacctcttcatcggaaattgctactccgtctccccc |
215 |
Q |
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|||||||||||||||| |||||||||| || | ||||||||||||||||| |
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| T |
13512760 |
ctctcaccagatccgaactcttcatcgaaattcgctactccgtctccccc |
13512809 |
T |
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