View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9050_low_7 (Length: 453)
Name: NF9050_low_7
Description: NF9050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9050_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 53 - 438
Target Start/End: Original strand, 35466794 - 35467178
Alignment:
| Q |
53 |
tttgtggaaacttgataagaagacgtggtcctattagtttgaaaagaataaaacgttttacacttgggacctcataaattgttttcttagtaaccaaaca |
152 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35466794 |
tttgtggaaacttgataagaagatgtggtcctattagtttgaaaagaataaaacgttttacacttgggacctcataaattgttttcttagtaaccaaaca |
35466893 |
T |
|
| Q |
153 |
agcaaaacaagttcataaattttagaaatgtacatgtccttgtagacagnnnnnnncaccttcttcagactcattaattttaatagagagaaagnnnnnn |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35466894 |
agcaaaacaagttcataaattttagaaatgtacatgtccttgtagacagtttttttcaccttcttcaaactcattaattttaatagagagaaagaaaaaa |
35466993 |
T |
|
| Q |
253 |
ntgtcggcaactgcatacaaagaatcctacatagctactaaatggaatttcgaggttaagtaaaacatatcatcaatgtaagtcatcttctcaactaagc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35466994 |
atgtcggcaactgcatacaaagaatcctacatagctactaaatggaatttcgaggttaagtaaaacatatcatcaatgtaagtcatcttctcaactaagc |
35467093 |
T |
|
| Q |
353 |
ttatgccccctagtcttttcttttatgtgaaaaatatcatcgatgcaaagtcatctcaactaaattgacactaaatacactaatag |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35467094 |
ttatgccccctagtcttttcttttatgtgaaaaatatcatcgatgc-aagtcatctcaactaagttgacactaaatacactaatag |
35467178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35466640 - 35466723
Alignment:
| Q |
1 |
ttttgtacttgcaacttgatcatataacaagtcccacaaggagagtaaatagtttgtggaaacttgataagaagacgtggtcct |
84 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35466640 |
ttttgtacttgcaacttaatcatataacaagtcccacaaggagagtaaatagtttgtggaaacttgataagaagacgtggtcct |
35466723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University