View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9051_low_1 (Length: 674)
Name: NF9051_low_1
Description: NF9051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9051_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 17 - 656
Target Start/End: Complemental strand, 55577449 - 55576806
Alignment:
| Q |
17 |
agattaaactaccttttagtattcttgtccttgtccttcttcttcctcttcatcatcattattttcctcggttgcctccatatcctaggcagagagagaa |
116 |
Q |
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| T |
55577449 |
agattaaactaccttttggtattcttgtccttgtccttcttcttcctcttcatcatcattattttcctcggttgcctccatatcctaggcagagagagaa |
55577350 |
T |
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| Q |
117 |
caactaattaacataattgagagnnnnnnngaaacaactacgtaaataagagtataataatgtatgtatctatcttatgaaaatagttgtatccgcaaaa |
216 |
Q |
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| T |
55577349 |
caactaattaacataattgagagaaaaaaagaaacaactacgtaaataagagtataataatgtatgtatctatcttatgaaaatagttgtatccgcaaaa |
55577250 |
T |
|
| Q |
217 |
cgcaatacagaatttcaggtttttcagtttgaagagaactgcaaaaaatgaatagagagacataataagcaagaaagtaagagaggacttacagtggaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
55577249 |
cgcaatacagaatttcaggtttttcagtttgaagagaactgcaaaaaatgaatagagagacagaataagcaagaaagtaagagaggacttacagtggaat |
55577150 |
T |
|
| Q |
317 |
cttcttcttcttgctaaccgagaaagaacgaagacgagtgatcttcatgctaactgagattggtccgtttggagagagttgaat----ggatcggagaga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
55577149 |
cttcttcttcttgctaaccgagaaagaacgaagacgagtgatcttcatgctaactgagattggtccgtttggagagagttgaatggatggatcggagaga |
55577050 |
T |
|
| Q |
413 |
tggaggagaaattgaaggcgagggaaaaagaaaaggaatcgatgaagaaaaaccagggttagttgtttttagagttaaatatatgaccttggtcctttac |
512 |
Q |
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| T |
55577049 |
tggaggacaaattgaaggcgagggaaaaagaaaaggaatcgatgaagaaaaaccagggttagttgtttttagggttaa--atatgaccttagtcccttac |
55576952 |
T |
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| Q |
513 |
aaataatgattaaaattgatttattcacttttagtccatatttgttgannnnnnnnnnnnnnnnnnnnatagggatacaatgatgatgaaaacacataa- |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
55576951 |
aaataatgattaaaattgatttattcacttttagtccatatttgttgatttttagtccatttttttttatagggatacaatgatgatgaaaacacataat |
55576852 |
T |
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| Q |
612 |
-ttatagggattataaacatatttaatttgtttttatagtatggag |
656 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
55576851 |
tttatagggattataaacatatttaacttgtttttatagtatggag |
55576806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 10604013 - 10604055
Alignment:
| Q |
267 |
aatagagagacataataagcaagaaagtaagagaggacttaca |
309 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||| |
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| T |
10604013 |
aatagagagacaaactaagcaagaaagtaagagaggacttaca |
10604055 |
T |
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