View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9051_low_4 (Length: 513)
Name: NF9051_low_4
Description: NF9051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9051_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Original strand, 18287327 - 18287814
Alignment:
| Q |
18 |
ggttaatggtgacaaccagaatttagtattagctgaagactcaagcttgcttctccacaagtgagttgnnnnnnncttaagtatatgtattgaatgcttc |
117 |
Q |
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| T |
18287327 |
ggttaatggtgacagccagaatttagtattacctgaagactcaaacttgcttctccacaagtgagttgtttttttcttaagtatatgtattgaatgcttc |
18287426 |
T |
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| Q |
118 |
aatacactacccttgatattctgattttttagtttgcttagtcatttcggtagtaagttaaaattaaaattatttcagtagaggcaaataaaatcattgt |
217 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18287427 |
aaaacactacccttgatattctgattttttagtttgcttagtcattttggtagtaagttaaaattaaaattatttcagtagaggcaaataaaatcattgt |
18287526 |
T |
|
| Q |
218 |
ggaattgatgaatcatataataaacattatccggtgccaatttcggtcggctattccatacaaaactgactctggctttatgtgagtccccctcataaat |
317 |
Q |
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| T |
18287527 |
ggaattgatgaatcatataataaacattatctggtgccaacttcggtcagctattccatacagaactgactctggctttaaatgagtccccc-cgtaaat |
18287625 |
T |
|
| Q |
318 |
ggacggcgaaatttggccctcagattagtcgatcattatgccggatcctaagtt------tnnnnnnnnntgaaaatattgtcgttgtctaaaacttata |
411 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| | | |||||||||| || ||||||||||||| |
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| T |
18287626 |
ggacggcgaaatttggccctcagattagtcggtcattgtgccagatcctaagttttaaaataaaaaaatatataaatattgtctttctctaaaacttata |
18287725 |
T |
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| Q |
412 |
ggctaaaacatattttaaccaatgaaaatgtatctattttcacttttaaaccttgtaaacacaagtttttgttttggtatcaataatat |
500 |
Q |
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| T |
18287726 |
ggctaaaacatattttaaccaatgaaaatgtatctattttcacttttaatccttgtaaacacaagtttttgttttggtatcgataatat |
18287814 |
T |
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