View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9051_low_6 (Length: 333)
Name: NF9051_low_6
Description: NF9051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9051_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 13340669 - 13340995
Alignment:
| Q |
1 |
acaaaaagcgatataaataattacttctaatgttttatcacgtcaatctttgatttatattgagtacattagtaaaggaaaaacttcataaaattgttaa |
100 |
Q |
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| T |
13340669 |
acaaaaagcgatataaataattacttctaatgttttatcacgtcaatctttgatttatattgagtacattagtaaaggaaaaacttcataaaattgttaa |
13340768 |
T |
|
| Q |
101 |
aaaccggtccacggtggtaaagtctcttattatgtgttggtcgaagttacaatagtcacattgatgtaactattatattcaaagatcacattgaactaac |
200 |
Q |
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| T |
13340769 |
aaaccgatccacggtggtaaagtctcttattatgtgttggtcgaagttacaatagtcacattgatgtaactattatattcaaagatcacattgaactaac |
13340868 |
T |
|
| Q |
201 |
aataagaatcaaggtatcttgttatgtgcacggctgccaacaacagatatccccaatctcagatataatgccgaactaaacagcccccaacccttccaaa |
300 |
Q |
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| T |
13340869 |
aataagaatcaagttatcttgttatgtgcacggctgccaacaacagatatccccaatctcagatataatgccgaattaaacagcccccaacccttccaaa |
13340968 |
T |
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| Q |
301 |
accgaacagaattggacagaataatct |
327 |
Q |
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| T |
13340969 |
accgaacagaattggacagaaaaatct |
13340995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 6354956 - 6355044
Alignment:
| Q |
228 |
gcacggctgccaacaacagatatccccaatctcagatataatgccgaactaaacagcccccaacccttccaaaaccgaacagaattgga |
316 |
Q |
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| T |
6354956 |
gcactgctgccaacagcagatttccccaaacttagatagaatgccgaaataaacagcccccaacccttccaaaaccaaacataattgga |
6355044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 41219100 - 41219150
Alignment:
| Q |
114 |
gtggtaaagtctcttattatgtgttggtcgaagttacaatagtcacattga |
164 |
Q |
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||||||||||||| |||| |||||||| ||||||||||||||||||||||| |
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| T |
41219100 |
gtggtaaagtctcatattgtgtgttggccgaagttacaatagtcacattga |
41219150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 1874702 - 1874614
Alignment:
| Q |
228 |
gcacggctgccaacaacagatatccccaatctcagatataatgccgaactaaacagcccccaacccttccaaaaccgaacagaattgga |
316 |
Q |
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| T |
1874702 |
gcactgctgccaacaacaaattttcccaaacttagatagaatgacgaactaaacagcccccaacccttccaaaaccgaacagaattgga |
1874614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 14244406 - 14244494
Alignment:
| Q |
228 |
gcacggctgccaacaacagatatccccaatctcagatataatgccgaactaaacagcccccaacccttccaaaaccgaacagaattgga |
316 |
Q |
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|||| |||||||||| ||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
14244406 |
gcactgctgccaacagcagatttccccaaacttagatagaatgccgaactaaacagcccccaacccttccaaaaccaaacataattgga |
14244494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 24499318 - 24499383
Alignment:
| Q |
99 |
aaaaaccggtccacggtggtaaagtctcttattatgtgttggtcgaagttacaatagtcacattga |
164 |
Q |
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|||| ||| |||||||| |||||||||| |||| |||||||||||||||||||||| ||||||||| |
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| T |
24499318 |
aaaagccgctccacggtagtaaagtctcatattgtgtgttggtcgaagttacaataatcacattga |
24499383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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