View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9051_low_7 (Length: 314)
Name: NF9051_low_7
Description: NF9051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9051_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 17174775 - 17174904
Alignment:
| Q |
1 |
tgctttatatattgtaatcagagtttaatacaaacaaatcaagaacctaagagggccatcaaatatgtgtaaagttaacaacatgaagacaacatatatc |
100 |
Q |
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| T |
17174775 |
tgctttatatattgtaatcagagtttaatacaaacaaatcaagaacctaagagggccatcaaatatgtgtaatgttaacaacatgaagacaacatatatc |
17174874 |
T |
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| Q |
101 |
agatgatattgttaaagtaaacaagacaat |
130 |
Q |
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| T |
17174875 |
agatgatattgttaaagtaaacaagacaat |
17174904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 17174939 - 17175041
Alignment:
| Q |
196 |
aggcacgaagaaccgagaaatcaaagcgtttcttgtatggatcccaatgcattccgatttcatctcctttctttaaactccttcgaactacaaattcctt |
295 |
Q |
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| T |
17174939 |
aggcacgaagaaccgagaaatcaaaccgtttcttgtatggatcccaatgcattccgatttcatctcctttctttaaactccttcgaactacaaattcctt |
17175038 |
T |
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| Q |
296 |
gat |
298 |
Q |
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| T |
17175039 |
gat |
17175041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 298
Target Start/End: Complemental strand, 11798928 - 11798793
Alignment:
| Q |
156 |
aaaactggaaactaatgttggtctctcacttgacgacgataggcacgaagaaccgagaaatcaaagcgtttcttgtatggatcccaatgcattccgattt |
255 |
Q |
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| T |
11798928 |
aaaactgaaaactaatgcttgtctgaaacttgatggcgataggcacgaagaaccgagaaatcgaaccgttgtttgta-------caatgcatgcaaattt |
11798836 |
T |
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| Q |
256 |
catctcctttctttaaactccttcgaactacaaattccttgat |
298 |
Q |
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| T |
11798835 |
catctcctttcttcaagcctcttcgaagtacaaaatccttgat |
11798793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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