View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9052_high_4 (Length: 459)
Name: NF9052_high_4
Description: NF9052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9052_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 9 - 459
Target Start/End: Original strand, 3007700 - 3008150
Alignment:
| Q |
9 |
tagattattctaacctaacgagcctaattaatggaccggataaaattgttacatattattacaaaatatccgctgtttacaaaactatttttcgattatt |
108 |
Q |
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| T |
3007700 |
tagattattctaacctaacgagcctaattaatggaccggataaaattgttacatattattacaaaatatacgctgtttacaaaactatttttcgattatt |
3007799 |
T |
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| Q |
109 |
taaataaaatctaaagtaccaaatgtattttgaatagggggctgtagctgcactacatatggtacattgctttcatttggctggcttccccaaaggtctt |
208 |
Q |
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| T |
3007800 |
taaataaaatctaaagtaccaaatgtattttgaatagggggctgtagctgcactacatatggtacattgctttcatttggctggcttccccaaaggtctt |
3007899 |
T |
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| Q |
209 |
attagctgtgtgacaggaaaaggttctgagatcggcgactttcttacaatgcatccaggggtgaactgcataaggtaatatccacttcttcagctatctt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3007900 |
attagctgtgtgacaggaaaaggttctgagatcggcgactttcttacaatgcatccaggggtgaactgcataaggtaatatccacttcttcagctatctt |
3007999 |
T |
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| Q |
309 |
gttagcattactgtccaattttgtgtttggttttattatacaaaaatgtatagagtaaaccgcgtcattttggtccctaaagtgtgtgaggcagtgtcat |
408 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3008000 |
gttaacattactgtccaattttgtgtttggttttattatacaaaaatgtatagagtaaaccgcgtcattttggtccctaaagtgtgtgaggcagtgtcat |
3008099 |
T |
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| Q |
409 |
tgtagtcgatgaatgtattgaaatttgaaaaatatccttgattgtgtcttt |
459 |
Q |
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| T |
3008100 |
tgtagtcgatgaatgtattgaaatttgaaaaatatccttgattgtgtcttt |
3008150 |
T |
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Back To:
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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 54726399 - 54726289
Alignment:
| Q |
174 |
attgctttcatttggctggcttccccaaaggtcttattagctgtgtgacaggaaaaggttctgagatcggcgactttcttacaatgcatccaggggtgaa |
273 |
Q |
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|||||||||| |||||||| || ||||||||||| || |||||||| || || ||||| || || || || ||||| ||||||||||||||||| ||||| |
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| T |
54726399 |
attgctttcacttggctggttttcccaaaggtctaatcagctgtgttactggcaaaggctcagaaattggtgacttccttacaatgcatccaggagtgaa |
54726300 |
T |
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| Q |
274 |
ctgcataaggt |
284 |
Q |
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| T |
54726299 |
ctgtataaggt |
54726289 |
T |
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