View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9052_low_14 (Length: 306)

Name: NF9052_low_14
Description: NF9052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9052_low_14
NF9052_low_14
[»] chr6 (3 HSPs)
chr6 (13-287)||(7239715-7239989)
chr6 (13-270)||(7206998-7207255)
chr6 (13-279)||(7226061-7226327)
[»] chr2 (4 HSPs)
chr2 (13-81)||(22610145-22610213)
chr2 (13-81)||(22608823-22608891)
chr2 (111-220)||(22609710-22609818)
chr2 (156-220)||(22609459-22609523)
[»] chr4 (2 HSPs)
chr4 (13-81)||(14505687-14505755)
chr4 (13-81)||(14506742-14506810)
[»] scaffold1343 (1 HSPs)
scaffold1343 (13-64)||(1943-1994)
[»] scaffold0013 (3 HSPs)
scaffold0013 (13-81)||(246492-246560)
scaffold0013 (15-81)||(247735-247801)
scaffold0013 (151-215)||(247027-247091)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 7239989 - 7239715
Alignment:
Q  13 ataatactcaaagcagtattatatacataaagaatcatcggtaattatcatcgtattttgtcttattttcctctannnnnnnatgcttccattttcccgt 112  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||  ||    
T  7239989 ataatactcaaagcagtattatatacataaaaaatcatcgataattatcatcgtattttgtcttattttcctctatttttttatgcttccattttcttgt 7239890  T
Q  113 taaatcttgtgatgttttcttctctagatcgacaagcaaggtgaaaaaacttggcttacggatcatcatttatgacacgatcaaatatttcttccatgct 212  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  7239889 taaatcttgtgatgttttcttctctagatcgacgagcaagttgaaaaaacttggcttacagatcatcatttatgacatgatcaaatatttcttccatgct 7239790  T
Q  213 gctctgcagaaatcttcgacgagtgtaatttatttgattaaatataactgatttgagaggcattgaacagggtaa 287  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7239789 gctctgcagaaatcttcgatgaatgtaatttatttgattaaatataactgatttgagaggcattgaacagggtaa 7239715  T

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Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 7207255 - 7206998
Alignment:
Q  13 ataatactcaaagcagtattatatacataaagaatcatcggtaattatcatcgtattttgtcttattttcctctannnnnnnatgcttccattttcccgt 112  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||| ||||        || ||||||||| ||||    
T  7207255 ataatactcaaagcagtattatatacatgaaaaatcatcggtaattatcatcgtgttttgttttattttcatctatttcttgttggttccatttttccgt 7207156  T
Q  113 taaatcttgtgatgttttcttctctagatcgacaagcaaggtgaaaaaacttggcttacggatcatcatttatgacacgatcaaatatttcttccatgct 212  Q
    |||||| |||||||||||||| |||||||| || | |||||| |||| |||| |||||||||||||||||||||||| |||||||| |||| ||||||||    
T  7207155 taaatcatgtgatgttttcttttctagatccacgaacaaggtaaaaagactttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgct 7207056  T
Q  213 gctctgcagaaatcttcgacgagtgtaatttatttgattaaatataactgatttgaga 270  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7207055 gctctgcagaaatcttcgacgagtgtaatttctttgattaaatataactgatttgaga 7206998  T

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Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 7226327 - 7226061
Alignment:
Q  13 ataatactcaaagcagtattatatacataaagaatcatcggtaattatcatcgtattttgtcttattttcctctannnnnnnatgcttccattttcccgt 112  Q
    ||||||||||||| ||||||||||| || || |||||||||||||||||||||| |||||| |||||||| ||||        || ||||||||| ||||    
T  7226327 ataatactcaaagtagtattatatatatgaaaaatcatcggtaattatcatcgtgttttgttttattttcatctatttcttgttggttccatttttccgt 7226228  T
Q  113 taaatcttgtgatgttttcttctctagatcgacaagcaaggtgaaaaaacttggcttacggatcatcatttatgacacgatcaaatatttcttccatgct 212  Q
    ||||||||||||| ||||||| |||||||| || | |||||| |||| |||| |||||||||||||||||||||||| |||||||| |||| ||||||||    
T  7226227 taaatcttgtgattttttcttttctagatccacgaacaaggtaaaaagactttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgct 7226128  T
Q  213 gctctgcagaaatcttcgacgagtgtaatttatttgattaaatataactgatttgagaggcattgaa 279  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  7226127 gctctgcagaaatcttcgacgagtgtaatttctttgattaaatataactgatttgagacgcattgaa 7226061  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 22610213 - 22610145
Alignment:
Q  13 ataatactcaaagcagtattatatacataaagaatcatcggtaattatcatcgtattttgtcttatttt 81  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||    
T  22610213 ataatactcaaagaagtattatatacataaaaaattatcggtaattttcatcgtgttttgtcttatttt 22610145  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 22608823 - 22608891
Alignment:
Q  13 ataatactcaaagcagtattatatacataaagaatcatcggtaattatcatcgtattttgtcttatttt 81  Q
    |||||||||||||||| |||||||||||||| ||| ||| |||||| ||| ||| ||||||||||||||    
T  22608823 ataatactcaaagcagcattatatacataaaaaattatcagtaattttcaccgtgttttgtcttatttt 22608891  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 22609818 - 22609710
Alignment:
Q  111 gttaaatcttgtgatgttttcttctctagatcgacaagcaaggtgaaaaaacttggcttacggatcatcatttatgacacgatcaaatatttcttccatg 210  Q
    |||||||||||| || ||| ||||| |||||  || ||| |||| ||||||||||| ||| ||||||| |||||||||| |||||||| |||  |||||     
T  22609818 gttaaatcttgtaatattt-cttctttagattcacgagcgaggtaaaaaaacttggtttatggatcatgatttatgacatgatcaaatcttttatccatt 22609720  T
Q  211 ctgctctgca 220  Q
     |||||||||    
T  22609719 ttgctctgca 22609710  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 22609523 - 22609459
Alignment:
Q  156 aaaaaacttggcttacggatcatcatttatgacacgatcaaatatttcttccatgctgctctgca 220  Q
    ||||||||||| ||| |||||||  ||||||||| |||||||| |||  |||||| |||||||||    
T  22609523 aaaaaacttggtttatggatcatggtttatgacatgatcaaatcttttatccatgttgctctgca 22609459  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 14505687 - 14505755
Alignment:
Q  13 ataatactcaaagcagtattatatacataaagaatcatcggtaattatcatcgtattttgtcttatttt 81  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| |||||   ||||||||||||||    
T  14505687 ataatactcaaagcagtattatatacataaaaaattatcggtaattttcatctcgttttgtcttatttt 14505755  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 14506810 - 14506742
Alignment:
Q  13 ataatactcaaagcagtattatatacataaagaatcatcggtaattatcatcgtattttgtcttatttt 81  Q
    ||||||||||||||| |||||||||||||||  || |||||||||| ||||| | ||| ||||||||||    
T  14506810 ataatactcaaagcaatattatatacataaaacattatcggtaattttcatcatgtttcgtcttatttt 14506742  T

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Target: scaffold1343 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1343
Description:

Target: scaffold1343; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 1943 - 1994
Alignment:
Q  13 ataatactcaaagcagtattatatacataaagaatcatcggtaattatcatc 64  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  1943 ataatactcaaagcagtattatatacataaaaaattatcggtaattttcatc 1994  T

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Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 246492 - 246560
Alignment:
Q  13 ataatactcaaagcagtattatatacataaagaatcatcggtaattatcatcgtattttgtcttatttt 81  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||||| | |||   ||||||||||||||    
T  246492 ataatactcaaagcaatattatatacataaaaaattatcggtaattttgatctcgttttgtcttatttt 246560  T

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Target: scaffold0013; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 247801 - 247735
Alignment:
Q  15 aatactcaaagcagtattatatacataaagaatcatcggtaattatcatcgtattttgtcttatttt 81  Q
    |||||| ||||||||||||||||||||||  || |||||||||| ||||| | ||| ||||||||||    
T  247801 aatactaaaagcagtattatatacataaaacattatcggtaattttcatcatgtttcgtcttatttt 247735  T

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Target: scaffold0013; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 247027 - 247091
Alignment:
Q  151 aggtgaaaaaacttggcttacggatcatcatttatgacacgatcaaatatttcttccatgctgct 215  Q
    |||| ||||||||||| ||| ||||||| |||||||||| |||||||| |||  |||||| ||||    
T  247027 aggttaaaaaacttggtttatggatcatgatttatgacatgatcaaatcttttatccatgttgct 247091  T

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