View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9052_low_20 (Length: 257)
Name: NF9052_low_20
Description: NF9052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9052_low_20 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 7774150 - 7774387
Alignment:
| Q |
1 |
taaccatcaaatttgcttcatgaatagtccattgcactccaccttgaagcataagatcaactcttggtacagaatttttaatgctagatgagtcaaaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7774150 |
taaccatcaaatttgcttcatgaatagtccattgcactccaccttgaagcacaagatcaactcttggtacagaatttttaatgctagaagagtcaaaaca |
7774249 |
T |
|
| Q |
101 |
tgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttcttgagaaaatcacgaataaatggcttgtatacagaactttgcaat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774250 |
tgcctcaaatggtgccactgattccactctctttatttttctatccgaagccttcttgagaaaatcacgaataaatggcttgtatacagaactttgcaat |
7774349 |
T |
|
| Q |
201 |
tcagtgaaaggaattatggtactaattttggtgccacc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7774350 |
tcagtgaaaggaattatggtactaattttggtgccacc |
7774387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 7766823 - 7767060
Alignment:
| Q |
1 |
taaccatcaaatttgcttcatgaatagtccattgcactccaccttgaagcataagatcaactcttggtacagaatttttaatgctagatgagtcaaaaca |
100 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7766823 |
taaccatcaaattggcttcatgaatagtccactgcactccaccttgaagcacaagatcaactcttggtacagaatttttaatgctagaagagtcaaaaca |
7766922 |
T |
|
| Q |
101 |
tgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttcttgagaaaatcacgaataaatggcttgtatacagaactttgcaat |
200 |
Q |
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| T |
7766923 |
tgcctcaaatggtgccactgattccactctctttagttttctatctgaagcctttttgagaaaatcacgaataaagggcttgtacacagaagtttgcaat |
7767022 |
T |
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| Q |
201 |
tcagtgaaaggaattatggtactaattttggtgccacc |
238 |
Q |
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| T |
7767023 |
tcagtgaaaggactaattgtactaattttggtgccacc |
7767060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 26135822 - 26135656
Alignment:
| Q |
17 |
ttcatgaatagtccattgcactccaccttgaagcataagatcaactcttggtacagaatttttaatgctagatgagtcaaaacatgcctcaaatggtgcc |
116 |
Q |
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||||||||||||||| |||| || ||||||||| |||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
26135822 |
ttcatgaatagtccactgcataccttcttgaagcaaaagatcaattcttggtgcagaattttcaatgctagttgagtcaaaacatgcctcaaatggtgcc |
26135723 |
T |
|
| Q |
117 |
actgattccactttctttatttttctatccgaagccttcttgagaaaatcacgaataaatggcttgta |
184 |
Q |
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| T |
26135722 |
actgattccac-ttcttgagttttctattcgaagcgttcttgaaaaagtcgcgaataaaaggtttgta |
26135656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 7733843 - 7733779
Alignment:
| Q |
93 |
tcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttctt |
157 |
Q |
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| T |
7733843 |
tcaaaacatgtatcaaatggtgccactgatgccactttctttatttttttatcagaagccttctt |
7733779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 7699510 - 7699437
Alignment:
| Q |
93 |
tcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttcttgagaaaatc |
166 |
Q |
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| T |
7699510 |
tcaaaacatgctccaaatggtgccactaatgccactttctttatttttttatcagaagccttcttcacaaaatc |
7699437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 7726421 - 7726357
Alignment:
| Q |
93 |
tcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttctt |
157 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||| |||| ||||||||||| |
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| T |
7726421 |
tcaaaacatgtatcaaatggtgccactgatgacactttctttatttttttatcagaagccttctt |
7726357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 7746059 - 7746123
Alignment:
| Q |
93 |
tcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttctt |
157 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||| |||| ||||||||||| |
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| T |
7746059 |
tcaaaacatgtttcaaatggtgccactgatgccactttctttattttattatcagaagccttctt |
7746123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 7711533 - 7711469
Alignment:
| Q |
93 |
tcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttctt |
157 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||||| |||||| |||| || |||||||| |
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| T |
7711533 |
tcaaaacatgtttcaaatggtgccactgatgacactttcttaatttttttatcagaggccttctt |
7711469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11931 - 11694
Alignment:
| Q |
1 |
taaccatcaaatttgcttcatgaatagtccattgcactccaccttgaagcataagatcaactcttggtacagaatttttaatgctagatgagtcaaaaca |
100 |
Q |
| |
|
||||||| ||||| | |||||| |||||||| ||||| || |||||||||| |||||||| ||||||| ||||||||| |||||||| ||||||||||| |
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| T |
11931 |
taaccattaaattggtttcatgtatagtccactgcacacctccttgaagcaaaagatcaattcttggtgcagaattttcaatgctagtcgagtcaaaaca |
11832 |
T |
|
| Q |
101 |
tgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttcttgagaaaatcacgaataaatggcttgtatacagaactttgcaat |
200 |
Q |
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||| ||||| |||||||| ||||||||| |||| | |||||||||||||||||||||||||||||| |||||||| || ||||| |||||| |||||||| |
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| T |
11831 |
tgcgtcaaacggtgccaccgattccactctcttcagttttctatccgaagccttcttgagaaaatcgcgaataaagggtttgtagacagaattttgcaat |
11732 |
T |
|
| Q |
201 |
tcagtgaaaggaattatggtactaattttggtgccacc |
238 |
Q |
| |
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| |||||||||| | | ||||||||||||||||||||| |
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| T |
11731 |
ttagtgaaaggactcaaggtactaattttggtgccacc |
11694 |
T |
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