View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9052_low_22 (Length: 228)

Name: NF9052_low_22
Description: NF9052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9052_low_22
NF9052_low_22
[»] chr2 (6 HSPs)
chr2 (3-103)||(41378204-41378304)
chr2 (156-215)||(41378355-41378414)
chr2 (7-66)||(41419688-41419748)
chr2 (6-66)||(38908737-38908798)
chr2 (7-66)||(14732344-14732404)
chr2 (1-59)||(22649063-22649122)
[»] chr1 (12 HSPs)
chr1 (1-103)||(19472825-19472934)
chr1 (1-96)||(12172988-12173088)
chr1 (1-66)||(38548745-38548811)
chr1 (1-66)||(26990669-26990735)
chr1 (14-71)||(46757369-46757426)
chr1 (3-66)||(42442008-42442071)
chr1 (1-51)||(28447802-28447853)
chr1 (1-87)||(31833937-31834025)
chr1 (15-62)||(8462982-8463029)
chr1 (1-54)||(43460785-43460839)
chr1 (20-66)||(47029004-47029050)
chr1 (169-218)||(30465186-30465234)
[»] chr3 (10 HSPs)
chr3 (1-96)||(31525397-31525497)
chr3 (1-66)||(43073044-43073110)
chr3 (15-103)||(47820925-47821021)
chr3 (15-103)||(28934749-28934840)
chr3 (1-62)||(52076137-52076199)
chr3 (7-66)||(10454352-10454412)
chr3 (7-62)||(44656229-44656285)
chr3 (1-103)||(9358747-9358855)
chr3 (3-60)||(20701222-20701280)
chr3 (15-60)||(46750287-46750332)
[»] chr7 (15 HSPs)
chr7 (1-95)||(30655596-30655697)
chr7 (1-103)||(46691843-46691954)
chr7 (15-99)||(36615816-36615902)
chr7 (3-87)||(33320747-33320832)
chr7 (14-66)||(32679013-32679065)
chr7 (6-62)||(1039066-1039123)
chr7 (155-216)||(33320617-33320678)
chr7 (3-66)||(19471089-19471153)
chr7 (6-62)||(42598058-42598115)
chr7 (15-66)||(22197740-22197791)
chr7 (15-66)||(22240030-22240081)
chr7 (15-62)||(49035866-49035913)
chr7 (155-217)||(30655758-30655819)
chr7 (1-62)||(31424770-31424832)
chr7 (168-217)||(49036025-49036073)
[»] chr8 (10 HSPs)
chr8 (1-66)||(25829263-25829328)
chr8 (7-86)||(40930834-40930919)
chr8 (155-214)||(25829424-25829483)
chr8 (1-62)||(22839326-22839388)
chr8 (2-103)||(38086413-38086522)
chr8 (1-66)||(13959217-13959283)
chr8 (3-66)||(24200622-24200686)
chr8 (15-66)||(44362942-44362993)
chr8 (1-66)||(2318998-2319064)
chr8 (3-103)||(5200482-5200588)
[»] chr5 (8 HSPs)
chr5 (1-66)||(23172972-23173037)
chr5 (155-214)||(23173132-23173191)
chr5 (1-52)||(9597752-9597804)
chr5 (15-61)||(22887284-22887330)
chr5 (3-103)||(42241589-42241696)
chr5 (15-61)||(9931809-9931855)
chr5 (21-66)||(3677808-3677853)
chr5 (21-66)||(25539890-25539935)
[»] chr4 (7 HSPs)
chr4 (1-62)||(15186979-15187041)
chr4 (7-66)||(16572138-16572198)
chr4 (1-62)||(25641267-25641329)
chr4 (3-63)||(32183351-32183413)
chr4 (1-66)||(16662305-16662371)
chr4 (1-62)||(42390770-42390832)
chr4 (1-66)||(47571569-47571635)
[»] chr6 (4 HSPs)
chr6 (1-63)||(6575796-6575859)
chr6 (1-54)||(33112713-33112767)
chr6 (2-62)||(15859171-15859234)
chr6 (1-66)||(34761231-34761296)
[»] scaffold0343 (1 HSPs)
scaffold0343 (3-51)||(7953-8002)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 41378204 - 41378304
Alignment:
Q  3 aatcggcaaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaatacaaaggggaaatcggttgctacacaaactccggc 102  Q
    |||||||||  |||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41378204 aatcggcaagttttattaaccaacaagcccgtgaaagatgcactaataagctcgggtggaaaaatacaaaggggaaatcggttgccacacaaactccggc 41378303  T
Q  103 t 103  Q
    |    
T  41378304 t 41378304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 41378355 - 41378414
Alignment:
Q  156 agtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  41378355 agtaatgacgcaagcatatacctaagacataaccacaagcataccattgcgtcaacacca 41378414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 41419748 - 41419688
Alignment:
Q  7 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaa 41419688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 38908798 - 38908737
Alignment:
Q  6 cggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    ||||||||| ||||||||||| ||| | |||||||| ||||||||||||||||||| |||||    
T  38908798 cggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtgaaaaaa 38908737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 14732344 - 14732404
Alignment:
Q  7 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||| ||||||||||||||||| |||| ||  |||||||||||||||||||| ||||    
T  14732344 ggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgggaaaa 14732404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 22649063 - 22649122
Alignment:
Q  1 tgaatcggcaaaattt-attaaccaacaagcctgtgcaagacgcactaataagctcgggt 59  Q
    |||| ||||||||||| ||||||||||||||| |||||||| | ||||||||||| ||||    
T  22649063 tgaagcggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggt 22649122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 19472934 - 19472825
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg---aaaaataca---aaggggaaatcggttgctacaca 93  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||   |||||||||   ||||||||||| ||||| | |||    
T  19472934 tgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcagttgccataca 19472835  T
Q  94 aactccggct 103  Q
    ||||||||||    
T  19472834 aactccggct 19472825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 12173088 - 12172988
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaata-caaa---ggggaaatcggttgctacacaaa 95  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||| | ||||   ||||||||||||||| |||||||    
T  12173088 tgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggttgccacacaaa 12172989  T
Q  96 c 96  Q
    |    
T  12172988 c 12172988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38548811 - 38548745
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  38548811 tgaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgggaaaa 38548745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26990735 - 26990669
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |||||||||||    
T  26990735 tgaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtggaaaaa 26990669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 46757426 - 46757369
Alignment:
Q  14 tttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaatacaa 71  Q
    |||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||    
T  46757426 tttattaaccaacaagcccgtgcaagatgcactaataagctcaggtggaaaaaaacaa 46757369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 42442008 - 42442071
Alignment:
Q  3 aatcggcaaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    ||||||||||  ||||||||||||||| | |||||||| ||||||||||||||||||| |||||    
T  42442008 aatcggcaaatattattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaa 42442071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28447853 - 28447802
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataa 51  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||||||    
T  28447853 tgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataa 28447802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 31834025 - 31833937
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaataca-aaggggaaatcggttgc 87  Q
    ||||| |||||||| ||||||||||||||  | |||||||| ||||||| ||||||||||| ||||| | | ||||| |||||||||||    
T  31834025 tgaattggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtgaaaaaaaatacaagggaaaatcggttgc 31833937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 8462982 - 8463029
Alignment:
Q  15 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    ||||||||||||||||  |||||||| |||||||| ||||||||||||    
T  8462982 ttattaaccaacaagctcgtgcaagaagcactaattagctcgggtgga 8463029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43460839 - 43460785
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagct 54  Q
    ||||||| |||||| ||||||||||||||| |||||| ||| |||||||||||||    
T  43460839 tgaatcgacaaaatattattaaccaacaagtctgtgcgagaagcactaataagct 43460785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 47029050 - 47029004
Alignment:
Q  20 aaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    ||||||||||   |||||||||||| |||||||||||||||||||||    
T  47029050 aaccaacaagttcgtgcaagacgcattaataagctcgggtggaaaaa 47029004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 30465186 - 30465234
Alignment:
Q  169 gcatatacctaagacataaccacaagcatacccctgcgtcaacaccaaac 218  Q
    ||||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  30465186 gcatatacctatgaca-aaccacaagcatacccttgcgtcaccaccaaac 30465234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 31525497 - 31525397
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaata-caaa---ggggaaatcggttgctacacaaa 95  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||   ||||||||||||||| |||||||    
T  31525497 tgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggttgccacacaaa 31525398  T
Q  96 c 96  Q
    |    
T  31525397 c 31525397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43073044 - 43073110
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  43073044 tgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggaaaaa 43073110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 47821021 - 47820925
Alignment:
Q  15 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg-----aaaaataca---aaggggaaatcggttgctacacaaactccggct 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||     |||||||||   |||||||||||||||||  ||||||| ||||||    
T  47821021 ttattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccggct 47820925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 28934749 - 28934840
Alignment:
Q  15 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga-aaaataca----aaggggaaatcggttgctacacaaactccggct 103  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||| |||| |||    |||||||||||||||||  ||||||| ||||||    
T  28934749 ttattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaacaaaacaaggggaaatcggttgc--cacaaacaccggct 28934840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 52076199 - 52076137
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    |||||||||||||| ||| ||||||||||||| |||| ||| |||||||||||||||||||||    
T  52076199 tgaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 52076137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 10454412 - 10454352
Alignment:
Q  7 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||| ||||||||||||||||| |||||||  |||||||||||||||||||| ||||    
T  10454412 ggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgggaaaa 10454352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 44656229 - 44656285
Alignment:
Q  7 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    |||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtgga 44656285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9358747 - 9358855
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga--aaaataca---aaggggaaatcggttgctacacaa 94  Q
    |||||||||||||| |||||| |||||||||| |||| ||| | ||||||||||| |||||||  |||| |||   |||||||||||||||||  |||||    
T  9358747 tgaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaacatagaaggggaaatcggttgccgcacaa 9358846  T
Q  95 actccggct 103  Q
    || ||||||    
T  9358847 acaccggct 9358855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 20701280 - 20701222
Alignment:
Q  3 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtg 60  Q
    |||| ||||||| |||||||||||| |||| || ||||| |||||||||||||||||||    
T  20701280 aatcagcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtg 20701222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 46750332 - 46750287
Alignment:
Q  15 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtg 60  Q
    ||||||||||||||  |||| ||||| |||||||||||||||||||    
T  46750332 ttattaaccaacaaatctgtacaagatgcactaataagctcgggtg 46750287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 30655596 - 30655697
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa---tacaaa---ggggaaatcggttgctacaca 93  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||   ||||||||||||||| |||||    
T  30655596 tgaaacggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcggttgccacaca 30655695  T
Q  94 aa 95  Q
    ||    
T  30655696 aa 30655697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 46691843 - 46691954
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg-----aaaaataca---aaggggaaatcggttgctaca 91  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||     |||||||||   ||||||||||||||||| |||    
T  46691843 tgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgccaca 46691942  T
Q  92 caaactccggct 103  Q
     |||| ||||||    
T  46691943 taaacaccggct 46691954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 36615816 - 36615902
Alignment:
Q  15 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaataca----aaggggaaatcggttgctacacaaactcc 99  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||||||| |||    |||||||||||||||||  ||||||||||    
T  36615816 ttattacccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaacaaaacaaggggaaatcggttgc--cacaaactcc 36615902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 33320832 - 33320747
Alignment:
Q  3 aatcggcaaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggt-ggaaaaatacaaaggggaaatcggttgc 87  Q
    ||||||||||  || |||||||||||||| |||||||| |||||||||||||||||| ||||||| |  |||||||||| ||||||    
T  33320832 aatcggcaaatattgttaaccaacaagcccgtgcaagaagcactaataagctcgggtgggaaaaaaaacaaggggaaattggttgc 33320747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 32679065 - 32679013
Alignment:
Q  14 tttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  32679065 tttattaaccaacaagcccgtgcaagacgcactaataagctcgagtgaaaaaa 32679013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 1039066 - 1039123
Alignment:
Q  6 cggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    ||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  1039066 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtgga 1039123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 33320678 - 33320617
Alignment:
Q  155 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacaccaa 216  Q
    |||||||||||||| |||||||| | ||| |||||||||| ||| |||||||||||||||||    
T  33320678 gagtaatgacgcaaacatataccaatgacttaaccacaagaatagccctgcgtcaacaccaa 33320617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 19471089 - 19471153
Alignment:
Q  3 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||| ||||| ||||||| ||||||||| |||||||  |||||||||||||||||||||||||    
T  19471089 aatcgggaaaatattattaagcaacaagccggtgcaaggtgcactaataagctcgggtggaaaaa 19471153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 42598115 - 42598058
Alignment:
Q  6 cggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    ||||||||| |||||||||||||| || |||||||| ||||||||||||| |||||||    
T  42598115 cggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtgga 42598058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 22197791 - 22197740
Alignment:
Q  15 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    ||||||||||||||| | |||||||  ||||||| |||||||||||||||||    
T  22197791 ttattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaa 22197740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 22240030 - 22240081
Alignment:
Q  15 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    ||||||||||||||| | |||||||  ||||||| |||||||||||||||||    
T  22240030 ttattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaa 22240081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 49035866 - 49035913
Alignment:
Q  15 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    ||||||||||||||| | || ||||| |||||||||||||||||||||    
T  49035866 ttattaaccaacaagtccgtacaagaagcactaataagctcgggtgga 49035913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 30655758 - 30655819
Alignment:
Q  155 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacaccaaa 217  Q
    ||||||||||||  ||||||||  | |||| | ||||||||||||||||||||||||||||||    
T  30655758 gagtaatgacgccggcatatacaaatgaca-atccacaagcatacccctgcgtcaacaccaaa 30655819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 31424770 - 31424832
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    |||| ||||||||| |||||||||||||| || ||||||||  |||||||||||| |||||||    
T  31424770 tgaagcggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtgga 31424832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 49036025 - 49036073
Alignment:
Q  168 agcatatacctaagacataaccacaagcatacccctgcgtcaacaccaaa 217  Q
    ||||||||| || |||| ||||||| ||||||||||||||||||||||||    
T  49036025 agcatatacatatgaca-aaccacatgcatacccctgcgtcaacaccaaa 49036073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25829263 - 25829328
Alignment:
Q  1 tgaatcggcaaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    ||||||||||||  ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  25829263 tgaatcggcaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaa 25829328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 40930834 - 40930919
Alignment:
Q  7 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa--tacaaa---ggggaaatcggttg 86  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||||||   ||||||||||||||    
T  40930834 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaatacaaacaaggggaaatcggttg 40930919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 25829424 - 25829483
Alignment:
Q  155 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacc 214  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||    
T  25829424 gagtaatgacgcaagcatatacttatgacacaaccacaagcatacccctgcttcaacacc 25829483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22839388 - 22839326
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  22839388 tgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatgga 22839326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 38086413 - 38086522
Alignment:
Q  2 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg----aaaaataca---aaggggaaatcggttgctacaca 93  Q
    ||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    |||||||||   ||||| ||||||||||| | |||    
T  38086413 gaatcagcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcggttgccataca 38086512  T
Q  94 aactccggct 103  Q
    ||||| ||||    
T  38086513 aactctggct 38086522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13959217 - 13959283
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||| ||||||||| |||||| |||||||||| |||||||| ||| |||||||||||||||||||||    
T  13959217 tgaaacggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtggaaaaa 13959283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 24200622 - 24200686
Alignment:
Q  3 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||||||| ||||||| ||||||| | |||||||| ||||||||||||| |||||||||||    
T  24200622 aatcggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtggaaaaa 24200686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 44362942 - 44362993
Alignment:
Q  15 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||||||||| ||||||||||| ||||||||||| |||| ||||||||    
T  44362942 ttattaaccaacaatcctgtgcaagaagcactaataagttcggatggaaaaa 44362993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2318998 - 2319064
Alignment:
Q  1 tgaatcggcaaa-atttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||||||| ||||||||||||| ||  |||||||||| ||||||||||| | ||||| |||||    
T  2318998 tgaatcggcaaagatttattaaccaataaatctgtgcaagatgcactaataagtttgggtgaaaaaa 2319064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 5200482 - 5200588
Alignment:
Q  3 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga--aaaataca---aaggggaaatcggttgctacacaaac 96  Q
    |||||||||||| ||||||||||||||| | ||||||||  |||||||||| | |||||||  |||| |||   ||||| |||||||||||  |||||||    
T  5200482 aatcggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggagaaaaaaacatacaagggaaaatcggttgccgcacaaac 5200581  T
Q  97 tccggct 103  Q
     ||||||    
T  5200582 accggct 5200588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 23172972 - 23173037
Alignment:
Q  1 tgaatcggcaaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    ||||||||||||  ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  23172972 tgaatcggcaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaa 23173037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 23173132 - 23173191
Alignment:
Q  155 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacc 214  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||    
T  23173132 gagtaatgacgcaagcatatacttatgacacaaccacaagcatacccctgcttcaacacc 23173191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9597752 - 9597804
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataag 52  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  9597752 tgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataag 9597804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 22887330 - 22887284
Alignment:
Q  15 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg 61  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  22887330 ttattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 22887284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 42241589 - 42241696
Alignment:
Q  3 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtg---gaaaaataca---aaggggaaatcggttgctacacaaa 95  Q
    |||||||||||| ||||||||||| ||| | | |||||| |||||||||||||||| ||    |||||||||   |||||||||||||| || | |||||    
T  42241589 aatcggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcggatgagaaaaaaatacaaagaaggggaaatcggtcgccatacaaa 42241688  T
Q  96 ctccggct 103  Q
    ||||||||    
T  42241689 ctccggct 42241696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 9931809 - 9931855
Alignment:
Q  15 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg 61  Q
    ||||||||||||||||| |||||||| ||||||| ||||| ||||||    
T  9931809 ttattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgg 9931855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 3677808 - 3677853
Alignment:
Q  21 accaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||||||  ||| ||| |||||||||||||||||||||||||    
T  3677808 accaacaagcccatgcgagatgcactaataagctcgggtggaaaaa 3677853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 25539935 - 25539890
Alignment:
Q  21 accaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    ||||||||||| |||||||| ||| ||||||||||||||| |||||    
T  25539935 accaacaagcccgtgcaagaagcattaataagctcgggtgaaaaaa 25539890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 15186979 - 15187041
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||    
T  15186979 tgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 15187041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 16572198 - 16572138
Alignment:
Q  7 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaa 16572138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25641267 - 25641329
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||| |||||||    
T  25641267 tgaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtgga 25641329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 32183413 - 32183351
Alignment:
Q  3 aatcggcaaaat-ttattaaccaa-caagcctgtgcaagacgcactaataagctcgggtggaa 63  Q
    |||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||    
T  32183413 aatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaa 32183351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16662305 - 16662371
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||| ||||||| ||||||||||||||||| |||| ||| |||||||||||||  ||||||||||    
T  16662305 tgaatcagcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtggaaaaa 16662371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 42390770 - 42390832
Alignment:
Q  1 tgaatcggcaaaattt-attaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    ||||||||| |||||| |||  |||||||||| |||||||||| |||||||||||||||||||    
T  42390770 tgaatcggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtgga 42390832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 47571569 - 47571635
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||||||||||||| |||||||||||||| || ||| |||  ||||||||||||||||||| |||||    
T  47571569 tgaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtgaaaaaa 47571635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6575859 - 6575796
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaa 63  Q
    |||||||||||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||||||    
T  6575859 tgaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtggaa 6575796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33112713 - 33112767
Alignment:
Q  1 tgaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagct 54  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  33112713 tgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagct 33112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 15859234 - 15859171
Alignment:
Q  2 gaatcggcaaaat-ttattaaccaa--caagcctgtgcaagacgcactaataagctcgggtgga 62  Q
    ||||||||||||| ||||||| |||  |||||| ||||||| ||||||||||||||||||||||    
T  15859234 gaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtgga 15859171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34761296 - 34761231
Alignment:
Q  1 tgaatcggcaaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 66  Q
    |||| |||||||  ||||||| | ||||||| |||||||  |||||||||||||||||||| ||||    
T  34761296 tgaaacggcaaatattattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaa 34761231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 8002 - 7953
Alignment:
Q  3 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataa 51  Q
    |||||||||||| |||||||||||||||||| ||||| | ||||||||||    
T  8002 aatcggcaaaatattattaaccaacaagcctatgcaaaatgcactaataa 7953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University